##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1527995_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 3028738 Sequences flagged as poor quality 0 Sequence length 52 %GC 54 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.815749662070473 33.0 31.0 34.0 30.0 34.0 2 32.19174751992414 34.0 31.0 34.0 30.0 34.0 3 32.38221199720808 34.0 31.0 34.0 30.0 34.0 4 35.9697362399785 37.0 35.0 37.0 35.0 37.0 5 35.9888451889863 37.0 35.0 37.0 35.0 37.0 6 36.08307255365106 37.0 36.0 37.0 35.0 37.0 7 36.33182665519434 37.0 37.0 37.0 35.0 37.0 8 36.07972759611429 37.0 36.0 37.0 35.0 37.0 9 38.12746034817142 39.0 39.0 39.0 35.0 39.0 10 37.67193233617434 39.0 38.0 39.0 35.0 39.0 11 38.08469897363192 39.0 38.0 39.0 37.0 39.0 12 38.092339449632156 39.0 39.0 39.0 37.0 39.0 13 38.01869161347069 39.0 39.0 39.0 37.0 39.0 14 38.5359773608678 40.0 38.0 40.0 36.0 40.0 15 37.11340300811757 39.0 35.0 40.0 33.0 40.0 16 36.859822473914875 39.0 35.0 40.0 32.0 40.0 17 36.904682412278646 39.0 35.0 40.0 32.0 40.0 18 37.09224502086347 39.0 35.0 40.0 32.0 40.0 19 37.28883416129094 40.0 35.0 40.0 33.0 40.0 20 37.315270914816665 40.0 35.0 40.0 33.0 40.0 21 37.34540524799438 40.0 35.0 40.0 33.0 40.0 22 37.34000861084716 40.0 35.0 40.0 33.0 40.0 23 37.23686234992925 40.0 35.0 40.0 33.0 40.0 24 37.24270735864244 40.0 35.0 40.0 33.0 40.0 25 37.19283279042294 40.0 35.0 40.0 33.0 40.0 26 37.18655096611196 40.0 35.0 40.0 33.0 40.0 27 37.17488009857571 40.0 35.0 40.0 33.0 40.0 28 36.948642966146295 40.0 35.0 40.0 32.0 40.0 29 37.002685937179116 40.0 35.0 40.0 32.0 40.0 30 36.99015893748486 40.0 35.0 40.0 32.0 40.0 31 36.96094644039861 40.0 35.0 40.0 33.0 40.0 32 36.885433801140934 39.0 35.0 40.0 32.0 40.0 33 36.81934587937286 39.0 35.0 40.0 32.0 40.0 34 36.76072509408209 39.0 35.0 40.0 32.0 40.0 35 36.63110344968763 39.0 35.0 40.0 32.0 40.0 36 36.16865341274154 39.0 35.0 40.0 31.0 40.0 37 36.25890024161879 39.0 35.0 40.0 31.0 40.0 38 36.18515203361928 38.0 35.0 40.0 31.0 40.0 39 36.055088290898716 38.0 35.0 40.0 31.0 40.0 40 35.86993691762047 38.0 35.0 40.0 30.0 40.0 41 35.67125053405081 38.0 35.0 40.0 30.0 40.0 42 35.33617962332826 37.0 35.0 40.0 29.0 40.0 43 35.148837568650706 37.0 34.0 40.0 28.0 40.0 44 34.96441323085721 37.0 34.0 40.0 28.0 40.0 45 34.54203367871371 36.0 34.0 40.0 26.0 40.0 46 34.51864406891583 36.0 34.0 40.0 26.0 40.0 47 34.43499437719605 35.0 34.0 40.0 26.0 40.0 48 34.22782327160685 35.0 34.0 40.0 25.0 40.0 49 34.08325843965375 35.0 34.0 39.0 25.0 40.0 50 33.849179097036455 35.0 33.0 39.0 24.0 40.0 51 33.7184091195739 35.0 33.0 39.0 24.0 40.0 52 33.2544016682856 35.0 33.0 38.0 23.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 4.0 13 3.0 14 11.0 15 32.0 16 82.0 17 261.0 18 574.0 19 1240.0 20 2249.0 21 3858.0 22 6080.0 23 9017.0 24 12937.0 25 18208.0 26 24736.0 27 32629.0 28 42346.0 29 53885.0 30 67335.0 31 79341.0 32 94606.0 33 123399.0 34 208436.0 35 365043.0 36 247313.0 37 466095.0 38 784582.0 39 384436.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 29.272852257276792 20.308788677000123 34.331394792154356 16.086964273568725 2 24.406237845597737 21.694679434140557 34.55746254710708 19.341620173154627 3 24.243595847511408 20.58081616831829 36.46297566841371 18.712612315756598 4 28.631066800759918 20.082786956151374 39.16103010560834 12.125116137480363 5 0.0 0.0 0.0 100.0 6 0.0 0.0 100.0 0.0 7 0.0 0.0 100.0 0.0 8 0.0 0.0 0.0 100.0 9 0.0 0.0 100.0 0.0 10 100.0 0.0 0.0 0.0 11 99.18477596939715 0.5089908734264899 0.171886772642599 0.1343463845337563 12 98.74254557508772 0.7007539113650636 0.36780995913149306 0.18889055441573355 13 93.59310709609085 3.4211278757026857 1.7466680841987652 1.2390969440077022 14 53.79448469956793 27.906045356184656 7.570149679503476 10.72932026474393 15 31.80634970736987 29.525201585610905 18.225511747797267 20.44293695922196 16 29.45642706632267 19.350567794243016 27.138762085066453 24.05424305436786 17 22.182077155567764 18.66506776089579 31.947002348833074 27.205852734703367 18 21.776528706015508 21.38012597986356 32.22292585228567 24.62041946183526 19 24.882541837557426 21.33621330072129 28.319484881161728 25.461759980559563 20 25.950082179442397 21.040974821856494 25.8376261003758 27.17131689832531 21 27.8237008285299 22.731910122301763 22.9886507185501 26.455738330618235 22 28.318362301394178 21.34205731892293 22.869261058566305 27.47031932111658 23 26.668104008996487 21.2185405274408 24.94801465164699 27.165340811915723 24 26.36398394314728 22.843243621600813 24.481912928751182 26.310859506500726 25 27.754893292189685 19.657527326563077 25.559292352128182 27.028287029119056 26 29.085150316732577 20.021903512287956 23.780432642242413 27.112513528737054 27 31.27870419957091 22.588252929107767 21.055865512302482 25.077177359018837 28 31.84042330502011 22.187723071457484 20.906760505530684 25.065093117991715 29 33.25487381212901 21.052431738895873 19.986542249610235 25.706152199364883 30 31.82998991659232 22.94675207957902 19.39490969506111 25.828348308767545 31 27.367339135970166 24.080953849425075 20.52746061230783 28.02424640229693 32 28.35028979066529 26.08290977958476 20.18484266384217 25.38195776590778 33 28.124783325596336 26.62722889863699 20.309449018039857 24.938538757726818 34 26.263480036899857 27.20370662632423 21.272259271023113 25.2605540657528 35 28.102397764349373 27.010821008618112 19.27935001310777 25.60743121392474 36 28.809689052007798 27.08586876778381 20.628822961906906 23.475619218301482 37 29.117110823055675 26.845306527008937 20.823128312848453 23.21445433708693 38 28.393079890040013 27.324516019543456 22.400848142031435 21.881555948385103 39 28.51375721505128 27.82257824876236 22.44763330469654 21.216031231489815 40 28.9035565308059 27.91997855212303 20.322061531898765 22.854403385172304 41 28.4879708974497 27.554347718422655 20.31981637236367 23.637865011763974 42 29.262121715381124 27.89042829059496 19.74650828166715 23.100941712356764 43 29.16515063369628 26.528606964352807 19.82611239400701 24.480130007943902 44 27.4294111937051 28.76429060552613 20.16083926704786 23.64545893372091 45 27.154379150656148 27.580893428219937 21.393200732450282 23.871526688673633 46 28.07449835542064 26.74638743925688 20.97768113319805 24.201433072124427 47 29.32950951848592 25.04102368709344 21.20995609392427 24.419510700496378 48 27.23626143958309 25.852813944289665 21.81905466897434 25.091869947152905 49 27.33861430074176 26.08730104749899 21.242411856027164 25.331672795732086 50 27.953589911045455 27.526217190130016 20.38050171391517 24.13969118490936 51 25.4453174886702 28.347813511766283 22.02947234128538 24.177396658278134 52 26.35533347552677 28.221358202657342 21.351995451570918 24.071312870244967 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 3.5 8 7.0 9 78.5 10 150.0 11 434.0 12 718.0 13 1396.0 14 2465.0 15 2856.0 16 3265.5 17 3675.0 18 3881.0 19 4087.0 20 4581.0 21 5075.0 22 6627.0 23 8179.0 24 10732.5 25 13286.0 26 17661.0 27 22036.0 28 28454.0 29 34872.0 30 41018.5 31 47165.0 32 49574.5 33 51984.0 34 52329.5 35 52675.0 36 51947.0 37 51219.0 38 49473.0 39 51339.0 40 54951.0 41 61462.5 42 67974.0 43 74483.0 44 80992.0 45 93112.0 46 105232.0 47 117507.5 48 129783.0 49 144989.5 50 160196.0 51 169357.0 52 178518.0 53 187397.5 54 196277.0 55 201767.0 56 207257.0 57 229008.0 58 250759.0 59 257607.5 60 264456.0 61 260874.0 62 257292.0 63 231000.0 64 178046.5 65 151385.0 66 131173.5 67 110962.0 68 101952.0 69 92942.0 70 84887.5 71 76833.0 72 59514.0 73 42195.0 74 32787.0 75 23379.0 76 19274.0 77 15169.0 78 10591.0 79 6013.0 80 3714.0 81 1415.0 82 1312.5 83 1210.0 84 995.0 85 780.0 86 456.0 87 132.0 88 115.0 89 71.5 90 45.0 91 22.5 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 52 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 52 3028738.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 12.930121629312657 #Duplication Level Percentage of deduplicated Percentage of total 1 76.86529428086257 9.938776041244637 2 7.5688755248570665 1.9573296226705912 3 3.5372539935146032 1.3721137310974725 4 2.2136522624260944 1.1449117199269019 5 1.4903966024582957 0.9635504672850055 6 1.0697388363042664 0.8299111959008127 7 0.8021657117853376 0.7260470154174004 8 0.6215633433784905 0.642951170416489 9 0.4704755573674935 0.5474975562342321 >10 2.92195718733037 7.015141660093027 >50 0.46625449018675 4.473523530770532 >100 1.7935945729708234 54.29508622083413 >500 0.16423211879055358 13.780517617466451 >1k 0.014545517767279302 2.3126424506423353 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 0.0 0.0 10 0.0 0.0 0.0 0.0 0.0 11 0.004655404330120334 0.0 0.0 0.0 0.0 12 0.007395819645013864 0.0 0.0 0.0 0.0 13 0.01918290720425471 0.0 0.0 0.0 0.0 14 0.07148191755113846 0.0 0.0 0.0 0.0 15 0.12407808136590223 0.0 0.0 0.0 0.0 16 0.1514162004108642 0.0 0.0 0.0 0.0 17 0.16841998218399876 0.0 0.0 0.0 0.0 18 0.19879567001173426 0.0 0.0 0.0 0.0 19 0.22319527142988269 0.0 0.0 0.0 0.0 20 0.25211820897020476 0.0 0.0 0.0 0.0 21 0.27879598697543334 0.0 0.0 0.0 0.0 22 0.30745478809986204 0.0 0.0 0.0 0.0 23 0.3384247828633576 0.0 0.0 0.0 0.0 24 0.36942779467883985 0.0 0.0 0.0 0.0 25 0.40426078452477565 0.0 0.0 0.0 0.0 26 0.44563115066407194 0.0 0.0 0.0 0.0 27 0.4846242890603281 0.0 0.0 0.0 0.0 28 0.5259946551996244 0.0 0.0 0.0 0.0 29 0.5702044878097743 0.0 0.0 0.0 0.0 30 0.6240552996000315 0.0 0.0 0.0 0.0 31 0.6754958665952618 0.0 0.0 0.0 0.0 32 0.7267713483305588 0.0 0.0 0.0 0.0 33 0.7707830786287886 0.0 0.0 0.0 0.0 34 0.813738263263445 0.0 0.0 0.0 0.0 35 0.8514437366322211 0.0 0.0 0.0 0.0 36 0.8927810857195307 0.0 0.0 0.0 0.0 37 0.9347787758465738 0.0 0.0 0.0 0.0 38 0.9790546425606969 0.0 0.0 0.0 0.0 39 1.0302971072440072 0.0 0.0 0.0 0.0 40 1.0871194537130646 0.0 0.0 0.0 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TTTACGT 75 0.0 46.000004 26 ACGTTAT 55 1.8189894E-12 46.000004 30 ACGTTAA 75 0.0 46.000004 29 TACGGAT 55 1.8189894E-12 46.000004 17 CGTTAAC 75 0.0 46.000004 30 CACGTTA 55 1.8189894E-12 46.000004 29 ATACGTT 55 1.8189894E-12 46.000004 32 ATATTCG 75 0.0 46.000004 18 CTAGACG 25 3.4184886E-5 46.0 32 CGGCGTA 50 1.6370905E-11 46.0 29 CCGATCA 20 6.313097E-4 46.0 33 CCGATAG 40 5.6170393E-9 46.0 33 TAAACGT 20 6.313097E-4 46.0 14 CGTCTAT 30 1.8624196E-6 46.0 46 TACGGAC 65 0.0 46.0 44 TCGATAT 45 3.110472E-10 46.0 19 CCATGCG 25 3.4184886E-5 46.0 31 ACGATAT 40 5.6170393E-9 46.0 33 ACGTCAA 45 3.110472E-10 46.0 19 TTACGTC 20 6.313097E-4 46.0 15 >>END_MODULE