##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1527994_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 3077240 Sequences flagged as poor quality 0 Sequence length 59 %GC 54 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.498359893930925 31.0 31.0 34.0 30.0 34.0 2 31.96634809114661 33.0 31.0 34.0 30.0 34.0 3 32.12829483563193 33.0 31.0 34.0 30.0 34.0 4 35.7836977291339 37.0 35.0 37.0 35.0 37.0 5 35.697643342735695 37.0 35.0 37.0 33.0 37.0 6 35.82401827611756 37.0 35.0 37.0 35.0 37.0 7 36.10977369330959 37.0 35.0 37.0 35.0 37.0 8 35.86477330334976 37.0 35.0 37.0 35.0 37.0 9 37.89629635647528 39.0 38.0 39.0 35.0 39.0 10 37.3274811194447 39.0 37.0 39.0 33.0 39.0 11 37.82503347155243 39.0 37.0 39.0 35.0 39.0 12 37.8493328437171 39.0 37.0 39.0 35.0 39.0 13 37.70186985740469 39.0 37.0 39.0 35.0 39.0 14 37.94839466534947 40.0 38.0 40.0 33.0 40.0 15 36.522587773459335 38.0 35.0 40.0 31.0 40.0 16 36.2983345465417 38.0 35.0 40.0 31.0 40.0 17 36.23119613679791 38.0 35.0 40.0 30.0 40.0 18 36.37927948421313 38.0 35.0 40.0 30.0 40.0 19 36.61447205937788 39.0 35.0 40.0 31.0 40.0 20 36.756004406546126 39.0 35.0 40.0 31.0 40.0 21 36.744514240033276 39.0 35.0 40.0 31.0 40.0 22 36.75159493572162 39.0 35.0 40.0 31.0 40.0 23 36.677308562218094 39.0 35.0 40.0 31.0 40.0 24 36.65937268461349 39.0 35.0 40.0 31.0 40.0 25 36.60613861772237 39.0 35.0 40.0 31.0 40.0 26 36.471015260428175 39.0 35.0 40.0 31.0 40.0 27 36.34922365496354 39.0 35.0 40.0 30.0 40.0 28 36.27185789863644 38.0 35.0 40.0 30.0 40.0 29 36.18536513239136 38.0 35.0 40.0 30.0 40.0 30 36.09830464962109 38.0 35.0 40.0 30.0 40.0 31 36.06095624650661 38.0 35.0 40.0 30.0 40.0 32 35.923632865814824 38.0 35.0 40.0 30.0 40.0 33 35.7882888562478 38.0 35.0 40.0 30.0 40.0 34 35.73045001364859 38.0 35.0 40.0 29.0 40.0 35 35.64583197930613 38.0 34.0 40.0 29.0 40.0 36 35.44559410380731 38.0 34.0 40.0 28.0 40.0 37 35.3252879203442 38.0 34.0 40.0 28.0 40.0 38 35.11459229699341 37.0 34.0 40.0 27.0 40.0 39 34.92764002807711 37.0 34.0 40.0 27.0 40.0 40 34.7050594038814 37.0 33.0 40.0 26.0 40.0 41 34.490458332791725 36.0 33.0 40.0 25.0 40.0 42 34.31840935383656 36.0 33.0 40.0 24.0 40.0 43 34.07849014051553 36.0 33.0 40.0 24.0 40.0 44 33.89088338901093 35.0 33.0 40.0 23.0 40.0 45 33.651940700107886 35.0 33.0 39.0 23.0 40.0 46 33.4175839388543 35.0 33.0 39.0 23.0 40.0 47 33.295693543565015 35.0 33.0 39.0 23.0 40.0 48 33.03671764308276 35.0 32.0 39.0 22.0 40.0 49 32.92351977746292 35.0 32.0 38.0 22.0 40.0 50 32.71153696169294 35.0 32.0 38.0 20.0 40.0 51 32.48989581573098 35.0 31.0 38.0 20.0 40.0 52 32.31417374010477 35.0 31.0 38.0 20.0 40.0 53 32.0432819669574 35.0 31.0 37.0 20.0 40.0 54 31.83126957923334 35.0 31.0 37.0 18.0 40.0 55 31.603827455772056 35.0 31.0 37.0 18.0 40.0 56 31.300861486266914 34.0 30.0 36.0 17.0 39.0 57 31.046183268123382 34.0 30.0 36.0 15.0 39.0 58 30.783997673239657 34.0 29.0 36.0 13.0 39.0 59 30.21038885494794 34.0 28.0 35.0 10.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 2.0 12 0.0 13 9.0 14 27.0 15 147.0 16 496.0 17 1109.0 18 2388.0 19 4454.0 20 7337.0 21 11429.0 22 16359.0 23 22259.0 24 29993.0 25 38869.0 26 49359.0 27 60878.0 28 69800.0 29 78339.0 30 91791.0 31 111181.0 32 138010.0 33 179010.0 34 276906.0 35 341887.0 36 322961.0 37 482079.0 38 602145.0 39 138016.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 29.320917445503113 20.66865112893372 33.889719358906035 16.120712066657134 2 23.828463168293666 22.227385579285333 34.53360803837205 19.410543214048953 3 24.156711858678555 20.825090015728378 36.229185893852936 18.78901223174013 4 28.62298683235627 20.39525678855078 38.91113465313073 12.070621725962226 5 0.0 0.0 0.0 100.0 6 0.0 0.0 100.0 0.0 7 0.0 0.0 100.0 0.0 8 0.0 0.0 0.0 100.0 9 0.0 0.0 100.0 0.0 10 100.0 0.0 0.0 0.0 11 99.1852764165291 0.5083776371033784 0.1697625144610105 0.13658343190651362 12 98.74176209850386 0.6958183307119367 0.36558734450351615 0.1968322262806931 13 93.55929339278055 3.460308588215414 1.7190729354876446 1.2613250835163978 14 53.522117221926145 28.155522481184438 7.57077770989588 10.751582586993539 15 31.745947667390258 29.744803785210124 18.20183021148822 20.3074183359114 16 29.45902822009333 19.46120549583393 27.122486383902455 23.957279900170285 17 22.10666051396706 18.780433115389116 31.899949305221565 27.21295706542226 18 21.75361687746162 21.461017015247428 32.12342878683496 24.661937320455994 19 24.775025672355746 21.477395328281187 28.331686836255866 25.415892163107202 20 25.895152799261677 21.2107927883428 25.85163978110255 27.042414631292978 21 27.736250666181384 22.88193316088443 23.068106485032043 26.313709687902147 22 28.224155411992562 21.43888679466015 22.940394639352146 27.39656315399514 23 26.59639807099869 21.266557044624403 25.078056960133104 27.058987924243805 24 26.209785392104614 23.01481197436664 24.56149016651285 26.2139124670159 25 27.642302842807194 19.742691502775216 25.604762709440926 27.01024294497667 26 28.986234417854963 20.110131156490883 23.90239305351549 27.00124137213867 27 31.18736270164173 22.73560073312449 21.157595767635932 24.919440797597847 28 31.6682156737856 22.275220652272814 21.02744667299268 25.029117000948904 29 33.1988405194265 21.18606283552794 19.98654638572227 25.62855025932329 30 31.778996763333378 23.108077368031093 19.452431399565846 25.660494469069683 31 27.34882557096619 24.219657875238852 20.430450663581652 28.001065890213304 32 28.200042895581756 26.34025945327631 20.168105185165928 25.291592465976002 33 28.097093499369564 26.84964448661788 20.290682559696354 24.762579454316207 34 26.202343658603166 27.37963239786302 21.280693088611873 25.13733085492194 35 28.04435143180252 27.17129635647528 19.28218143531216 25.502170776410033 36 28.55386645175547 27.47075301243972 20.630922514980956 23.344458020823854 37 29.045118352809663 27.048686485292016 20.913740884688877 22.992454277209447 38 28.287393898428466 27.570875199854417 22.427142504322052 21.71458839739507 39 28.335228971415944 28.152435299164186 22.436241567118586 21.076094162301285 40 28.704098477856782 28.225812741287648 20.36315009554016 22.70693868531541 41 28.330224486877853 27.85470096580052 20.24226254695766 23.572812000363964 42 28.95445269137279 28.215446309030167 19.72072376545216 23.109377234144883 43 28.993026218299516 26.86885000844913 19.77600057194109 24.362123201310265 44 27.029091003626625 29.13074703305559 20.182988652168827 23.657173311148952 45 26.933518347610196 27.882615590594167 21.350560892228103 23.833305169567534 46 27.88521532282175 27.03682520700368 20.91757548972456 24.160383980450014 47 29.15745928169399 25.35099634737622 21.120517086740065 24.37102728418973 48 27.063017509196552 26.151128933719825 21.765868115584095 25.019985441499525 49 27.190111918472397 26.373860992317795 21.141607414436315 25.2944196747735 50 27.623487280810078 27.888075028272084 20.30537104678218 24.183066644135653 51 25.284638182267226 28.68482796271984 21.943397330075 24.087136524937932 52 26.13488060729745 28.54044533413058 21.270196669743015 24.05447738882895 53 25.895672745707195 28.19806059975822 21.74773498329672 24.158531671237863 54 25.494111606504532 27.98709232949006 22.014402516540795 24.504393547464613 55 26.04704215465807 27.99381913662893 20.593486370903797 25.36565233780921 56 26.91749749775773 27.614453211319233 21.18482796271984 24.283221328203194 57 27.358509573513928 26.415846667793218 21.992727249093345 24.232916509599512 58 25.943897778528815 26.649822568275468 21.000539444437223 26.4057402087585 59 26.54817303817707 26.1137902796012 22.722927038515035 24.6151096437067 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 1.5 7 3.0 8 54.5 9 299.0 10 492.0 11 989.0 12 1486.0 13 1715.5 14 2099.5 15 2254.0 16 2132.0 17 2010.0 18 2067.0 19 2415.5 20 2707.0 21 3184.0 22 3661.0 23 5485.5 24 7310.0 25 10912.0 26 20049.5 27 25585.0 28 31345.0 29 37105.0 30 41669.5 31 46186.5 32 46139.0 33 48469.5 34 50800.0 35 49439.5 36 49381.5 37 50684.0 38 52086.0 39 53488.0 40 58915.0 41 64342.0 42 70039.0 43 81877.0 44 88018.0 45 89385.5 46 90753.0 47 94719.5 48 112646.0 49 126606.0 50 135299.5 51 143993.0 52 151772.5 53 160189.5 54 160827.0 55 184811.0 56 208795.0 57 215625.5 58 235830.0 59 249204.0 60 235582.0 61 221960.0 62 204070.0 63 186180.0 64 172877.0 65 139001.5 66 118429.0 67 103087.5 68 87746.0 69 81198.0 70 65986.5 71 57323.0 72 48430.5 73 39538.0 74 32101.0 75 17024.0 76 9384.0 77 7157.5 78 4931.0 79 4730.0 80 4529.0 81 2724.5 82 1031.5 83 1143.0 84 719.5 85 296.0 86 215.0 87 117.5 88 101.0 89 69.5 90 38.0 91 21.5 92 3.0 93 1.0 94 0.5 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 52 0.0 53 0.0 54 0.0 55 0.0 56 0.0 57 0.0 58 0.0 59 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 59 3077240.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 17.51747073440491 #Duplication Level Percentage of deduplicated Percentage of total 1 83.72603913225929 14.666684402069924 2 6.125799359692155 2.146170220164873 3 2.644216154275844 1.389599372939034 4 1.5487945633053997 1.0852385374523108 5 0.957556621307797 0.8386985045147488 6 0.6540458469051279 0.6874337389271792 7 0.44410462222338276 0.5445712805968438 8 0.33143549489714685 0.4644729265763022 9 0.24257261661550958 0.38243328412771904 >10 1.5914499632242618 5.432698153091831 >50 0.32277130644952207 4.189761575818323 >100 1.2818577297735774 52.27004360082545 >500 0.11915913533404586 13.620547159620527 >1k 0.010197453736986491 2.281647243274931 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 0.0 0.0 10 0.0 0.0 0.0 0.0 0.0 11 0.003769611729991811 0.0 0.0 0.0 0.0 12 0.006076874081969557 0.0 0.0 0.0 0.0 13 0.017483199230479262 0.0 0.0 0.0 0.0 14 0.06710558812442319 0.0 0.0 0.0 0.0 15 0.11565558747449013 0.0 0.0 0.0 0.0 16 0.14178289636167474 0.0 0.0 0.0 0.0 17 0.1584536792710351 0.0 0.0 0.0 0.0 18 0.18610833084192327 0.0 0.0 0.0 0.0 19 0.21083828365678337 0.0 0.0 0.0 0.0 20 0.23810297539353448 0.0 0.0 0.0 0.0 21 0.26416529097502955 0.0 0.0 0.0 0.0 22 0.29142998271178067 0.0 0.0 0.0 0.0 23 0.3197670639924088 0.0 0.0 0.0 0.0 24 0.3490465482055348 0.0 0.0 0.0 0.0 25 0.38076328138201765 0.0 0.0 0.0 0.0 26 0.4178419622778854 0.0 0.0 0.0 0.0 27 0.45706542226150704 0.0 0.0 0.0 0.0 28 0.4963213788979735 0.0 0.0 0.0 0.0 29 0.5407443033367563 0.0 0.0 0.0 0.0 30 0.5937788407793997 0.0 0.0 0.0 0.0 31 0.6435962095904122 0.0 0.0 0.0 0.0 32 0.6920487189819449 0.0 0.0 0.0 0.0 33 0.7330594948720282 0.0 0.0 0.0 0.0 34 0.7715355318402205 0.0 0.0 0.0 0.0 35 0.8105965085596184 0.0 0.0 0.0 0.0 36 0.8480001559839336 0.0 0.0 0.0 0.0 37 0.88793854233014 0.0 0.0 0.0 0.0 38 0.9317765270177172 0.0 0.0 0.0 0.0 39 0.9784092238499434 0.0 0.0 0.0 0.0 40 1.0334910504218064 0.0 0.0 0.0 0.0 41 1.0893527966619438 0.0 0.0 0.0 0.0 42 1.151096437066982 0.0 0.0 0.0 0.0 43 1.2147248833370163 0.0 0.0 0.0 0.0 44 1.2779308731200687 0.0 0.0 0.0 0.0 45 1.341136862903121 0.0 0.0 0.0 0.0 46 1.4043428526861734 0.0 0.0 0.0 0.0 47 1.461894424874238 0.0 0.0 0.0 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCGATCA 20 3.1390728E-4 53.000004 15 TATACGA 40 1.6025297E-9 53.000004 30 TTTAGCG 30 7.014369E-7 53.0 37 CTAGACG 35 3.3445758E-8 53.0 32 CGGCGTA 50 3.6379788E-12 53.0 29 ACTATCG 15 0.006697329 53.0 49 CATATAG 25 1.4793173E-5 53.0 51 ACGTTAT 25 1.4793173E-5 53.0 30 ACGTTAA 60 0.0 53.0 29 ATTACGT 25 1.4793173E-5 53.0 17 TTCGTAA 15 0.006697329 53.0 27 TACGGTA 25 1.4793173E-5 53.0 31 TAACGTG 15 0.006697329 53.0 35 CTAACGG 15 0.006697329 53.0 37 CCGTAGA 35 3.3445758E-8 53.0 37 TTGCGAA 30 7.014369E-7 53.0 52 CATAACG 30 7.014369E-7 53.0 28 TATAGCG 60 0.0 53.0 42 ATGCGAT 35 3.3445758E-8 53.0 49 CACGTTA 25 1.4793173E-5 53.0 29 >>END_MODULE