##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1527993_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 3681942 Sequences flagged as poor quality 0 Sequence length 52 %GC 57 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.92235510499622 33.0 31.0 34.0 30.0 34.0 2 32.406087874279386 34.0 31.0 34.0 30.0 34.0 3 32.52343165644652 34.0 31.0 34.0 31.0 34.0 4 36.10627408036303 37.0 35.0 37.0 35.0 37.0 5 36.073798012027346 37.0 35.0 37.0 35.0 37.0 6 36.194461238118365 37.0 37.0 37.0 35.0 37.0 7 36.32597634617819 37.0 37.0 37.0 35.0 37.0 8 36.22263332773846 37.0 37.0 37.0 35.0 37.0 9 37.806816076950696 39.0 38.0 39.0 35.0 39.0 10 37.17501552170023 39.0 37.0 39.0 33.0 39.0 11 38.122346576887956 39.0 38.0 39.0 37.0 39.0 12 38.137911732449886 39.0 39.0 39.0 37.0 39.0 13 38.105874834530255 39.0 39.0 39.0 37.0 39.0 14 38.73818408872275 40.0 39.0 40.0 36.0 40.0 15 38.138783554982666 40.0 38.0 40.0 34.0 40.0 16 37.59268559906701 40.0 37.0 40.0 33.0 40.0 17 37.615584384544896 40.0 37.0 40.0 33.0 40.0 18 37.663956412132514 40.0 37.0 40.0 33.0 40.0 19 37.79163387147326 40.0 37.0 40.0 33.0 40.0 20 37.81044568328344 40.0 37.0 40.0 33.0 40.0 21 37.620388914328366 40.0 37.0 40.0 33.0 40.0 22 37.69175532911708 40.0 37.0 40.0 33.0 40.0 23 37.64412883201311 40.0 37.0 40.0 33.0 40.0 24 37.6101823439913 40.0 37.0 40.0 33.0 40.0 25 37.68273617563775 40.0 37.0 40.0 33.0 40.0 26 37.68453957178033 40.0 37.0 40.0 33.0 40.0 27 37.63807876386972 40.0 37.0 40.0 33.0 40.0 28 37.603096952640755 40.0 37.0 40.0 33.0 40.0 29 37.62114666662321 40.0 37.0 40.0 33.0 40.0 30 37.56430791142283 40.0 37.0 40.0 33.0 40.0 31 37.54511939623166 40.0 37.0 40.0 33.0 40.0 32 37.4747999832697 40.0 36.0 40.0 33.0 40.0 33 37.4161203517057 40.0 36.0 40.0 33.0 40.0 34 37.33812645609301 40.0 36.0 40.0 33.0 40.0 35 37.26428661831175 40.0 36.0 40.0 33.0 40.0 36 37.18722809865012 40.0 35.0 40.0 33.0 40.0 37 37.04724843574397 39.0 35.0 40.0 33.0 40.0 38 36.84261050282704 39.0 35.0 40.0 32.0 40.0 39 36.73284234243777 39.0 35.0 40.0 32.0 40.0 40 36.58711815666841 39.0 35.0 40.0 31.0 40.0 41 36.42617075445512 39.0 35.0 40.0 31.0 40.0 42 36.270238640369676 38.0 35.0 40.0 31.0 40.0 43 36.109843935618755 38.0 35.0 40.0 31.0 40.0 44 35.96602825356836 38.0 35.0 40.0 31.0 40.0 45 35.801169056981344 37.0 35.0 40.0 30.0 40.0 46 35.62400222491283 37.0 35.0 40.0 30.0 40.0 47 35.47897223802004 37.0 35.0 40.0 30.0 40.0 48 35.315289051266966 36.0 34.0 40.0 30.0 40.0 49 35.164439037877294 36.0 34.0 40.0 30.0 40.0 50 34.992067501334894 36.0 34.0 39.0 29.0 40.0 51 34.806152568400044 35.0 34.0 39.0 29.0 40.0 52 34.17696965351437 35.0 33.0 38.0 27.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 2.0 12 3.0 13 5.0 14 10.0 15 22.0 16 65.0 17 212.0 18 503.0 19 992.0 20 1726.0 21 2679.0 22 4360.0 23 6735.0 24 10329.0 25 14693.0 26 20807.0 27 27606.0 28 37227.0 29 48018.0 30 61399.0 31 76996.0 32 95813.0 33 123535.0 34 181852.0 35 330397.0 36 329749.0 37 640280.0 38 1134177.0 39 531750.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 28.845429938874652 18.629761142353683 35.357564024637 17.16724489413467 2 22.581262822716923 20.93422438484908 35.90787144392823 20.57664134850576 3 27.14716853225825 21.825601815563633 34.21362965521999 16.813599996958125 4 33.41239487205393 26.81603892728348 31.776926415462274 7.9946397852003095 5 0.0 0.0 0.0 100.0 6 0.0 0.0 0.0 100.0 7 0.0 0.0 100.0 0.0 8 0.0 100.0 0.0 0.0 9 100.0 0.0 0.0 0.0 10 0.0 100.0 0.0 0.0 11 99.47541270340488 0.3622001650216109 0.06613357842138741 0.09625355315211374 12 99.5215025114464 0.36803947482062455 0.039245593765463986 0.07121241996750628 13 98.62048342966835 0.777171394878029 0.12908948592889297 0.4732556895247128 14 65.86051599943725 23.50058746172536 3.9193447370979775 6.719551801739408 15 33.869300494141406 25.42813004658954 17.12107360735177 23.581495851917275 16 28.785733181022405 15.052083927449155 30.00033677879771 26.16184611273073 17 21.53352768729111 16.293276754495317 31.83868730142952 30.334508256784055 18 23.48673607569049 16.80409414379694 34.45029823935304 25.25887154115953 19 24.42670199584893 17.14671225130651 30.26943390200063 28.15715185084393 20 26.988094869500934 17.788085743881897 27.012864406880933 28.210954979736236 21 30.27209554088576 18.847255062681594 21.9101224299568 28.970526966475845 22 30.077225551081465 18.960075959914633 23.12711607081263 27.83558241819127 23 29.737024646232886 20.167563747609275 20.879090436514208 29.216321169643628 24 29.824043942028418 20.370690249873572 21.479290005111434 28.325975802986576 25 30.933349846358254 19.274366625003868 22.74430178422148 27.0479817444164 26 31.32868469954171 17.740284882271368 22.597232656027717 28.333797762159207 27 30.993046604210495 21.1724953842293 21.35085234911359 26.483605662446614 28 31.177324357635182 20.3403258389187 20.270742993778825 28.211606809667288 29 30.916619544794564 20.14287568897066 19.879183322279385 29.06132144395539 30 30.164000410652857 20.31916852573995 19.771522745333847 29.745308318273345 31 28.978457563970316 19.13976374424149 20.686827766434128 31.194950925354064 32 30.127009062065618 20.37921835813818 20.564582494781288 28.929190085014916 33 31.560328761289558 19.946647720143336 20.562029494218 27.93099402434911 34 28.561802440125344 20.54464736272326 22.084704213157078 28.808845983994313 35 31.312959302455063 21.567612960769072 19.661553604049168 27.457874132726694 36 33.53409695209756 20.94427342961948 20.10278814821092 25.418841470072046 37 32.51479789741392 20.123402269780456 20.406812491886075 26.954987340919544 38 30.581932034779474 23.481141202115623 21.85153921490344 24.085387548201464 39 31.553158632047978 23.397353896394893 22.7011452108697 22.34834226068743 40 32.59918271390478 22.488322738380994 20.394889436063902 24.51760511165032 41 32.25466343576298 23.455203802775817 18.65702936113605 25.63310340032515 42 32.20702553163521 23.20267402365382 19.862290063232933 24.728010381478036 43 32.401107893606145 22.280932181984397 19.431403319226646 25.886556605182808 44 30.09028930928298 24.427516783262746 20.447850617961937 25.034343289492337 45 29.704161553875647 22.41355241337316 21.11863793617607 26.76364809657512 46 27.38753081933393 22.973012611279593 21.30639211589971 28.333064453486774 47 29.518743098071614 20.524793709406612 23.071520409609928 26.884942782911843 48 29.703781319749194 20.01973415116262 22.02669134929339 28.249793179794793 49 29.494000720272073 19.86810221345149 23.605423442303003 27.032473623973434 50 30.084694435708116 20.911817730969144 21.167742457648707 27.83574537567403 51 27.838298376237326 22.012432569551613 22.678059567478247 27.471209486732818 52 29.71350444955407 21.618618652873945 22.249318430328344 26.418558467243646 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.5 6 1.0 7 1.0 8 1.0 9 5.5 10 10.0 11 53.5 12 97.0 13 233.5 14 572.5 15 775.0 16 1176.5 17 1578.0 18 2025.5 19 2473.0 20 2431.0 21 2389.0 22 2967.5 23 3546.0 24 4820.5 25 6095.0 26 7594.5 27 9094.0 28 12370.5 29 15647.0 30 17160.0 31 18673.0 32 19741.5 33 20810.0 34 21600.5 35 22391.0 36 26688.5 37 30986.0 38 34820.5 39 40664.0 40 42673.0 41 51415.0 42 60157.0 43 67873.5 44 75590.0 45 85279.0 46 94968.0 47 109291.5 48 123615.0 49 141274.5 50 158934.0 51 169729.5 52 180525.0 53 200509.5 54 220494.0 55 240250.5 56 260007.0 57 300797.0 58 341587.0 59 360139.0 60 378691.0 61 375717.0 62 372743.0 63 345845.0 64 287371.5 65 255796.0 66 229885.0 67 203974.0 68 179298.0 69 154622.0 70 130046.0 71 105470.0 72 89720.5 73 73971.0 74 59100.0 75 44229.0 76 33158.0 77 22087.0 78 16872.5 79 11658.0 80 8523.0 81 5388.0 82 3083.0 83 778.0 84 861.5 85 945.0 86 529.5 87 114.0 88 141.5 89 194.0 90 219.0 91 109.5 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 52 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 52 3681942.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 6.4842788772839315 #Duplication Level Percentage of deduplicated Percentage of total 1 72.0526467550614 4.672094554062454 2 8.7744656999505 1.1379216519528281 3 4.3472186995577715 0.8456573516542856 4 2.605091097533726 0.6756854870855342 5 1.6959129476673847 0.5498386252135976 6 1.0433643475567265 0.4059279240103928 7 0.7234142715063079 0.3283573916177867 8 0.508990423491913 0.2640348681430732 9 0.35850664179029496 0.2092191340254126 >10 2.5462856049262674 3.5629212654285016 >50 0.969164154404604 4.706359553902127 >100 3.8985776806131316 60.53622727129769 >500 0.4304117443669991 18.343985758599832 >1k 0.04594993157297052 3.761769163006491 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.025937399339804917 0.0 0.0 0.0 0.0 9 0.025937399339804917 0.0 0.0 0.0 0.0 10 0.030065655569805283 0.0 0.0 0.0 0.0 11 0.030255772633028984 0.0 0.0 0.0 0.0 12 0.03332480522506873 0.0 0.0 0.0 0.0 13 0.03851228509302971 0.0 0.0 0.0 0.0 14 0.05111433042671503 0.0 0.0 0.0 0.0 15 0.07428145255954602 0.0 0.0 0.0 0.0 16 0.08639462544494182 0.0 0.0 0.0 0.0 17 0.0972584576291533 0.0 0.0 0.0 0.0 18 0.10874696016395695 0.0 0.0 0.0 0.0 19 0.1204255797619843 0.0 0.0 0.0 0.0 20 0.1303388266300773 0.0 0.0 0.0 0.0 21 0.14193596748672305 0.0 0.0 0.0 2.715958046052871E-5 22 0.1543750553376452 0.0 0.0 0.0 2.715958046052871E-5 23 0.1670585794127121 0.0 0.0 0.0 2.715958046052871E-5 24 0.17922607145902897 0.0 0.0 0.0 2.715958046052871E-5 25 0.19226267008008274 0.0 0.0 0.0 2.715958046052871E-5 26 0.2093460461897553 0.0 0.0 0.0 2.715958046052871E-5 27 0.22613066691436204 0.0 0.0 0.0 2.715958046052871E-5 28 0.24079684036304755 0.0 0.0 0.0 2.715958046052871E-5 29 0.26010730207048344 0.0 0.0 0.0 2.715958046052871E-5 30 0.28604470141028837 0.0 0.0 0.0 2.715958046052871E-5 31 0.3076908870373298 0.0 0.0 0.0 2.715958046052871E-5 32 0.3279519340608842 0.0 0.0 0.0 2.715958046052871E-5 33 0.34221071380266177 0.0 0.0 0.0 2.715958046052871E-5 34 0.3545683229122023 0.0 0.0 0.0 2.715958046052871E-5 35 0.36793083649878244 0.0 0.0 0.0 2.715958046052871E-5 36 0.3818093821141126 0.0 0.0 0.0 2.715958046052871E-5 37 0.3950632573788506 0.0 0.0 0.0 2.715958046052871E-5 38 0.4123367505517469 0.0 0.0 0.0 2.715958046052871E-5 39 0.42912137127635364 0.0 0.0 0.0 2.715958046052871E-5 40 0.4511477910298424 0.0 0.0 0.0 2.715958046052871E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCGCATA 35 1.0203985E-7 46.000004 22 TCGTTAA 35 1.0203985E-7 46.000004 33 GTCGATA 70 0.0 46.000004 36 ATAGCCG 55 1.8189894E-12 46.000004 42 TAACGGG 55 1.8189894E-12 46.000004 35 TATGCGT 35 1.0203985E-7 46.000004 45 GCCGATA 35 1.0203985E-7 46.000004 15 CGAATCG 35 1.0203985E-7 46.000004 34 TTACGAC 55 1.8189894E-12 46.000004 34 ACCGTAC 70 0.0 46.000004 43 CGATAGG 70 0.0 46.000004 38 GATACGC 30 1.8625287E-6 46.0 13 ACGTTAG 50 1.6370905E-11 46.0 29 ATAATAC 25 3.418634E-5 46.0 31 TTCGTAA 30 1.8625287E-6 46.0 34 CACGATT 20 6.313277E-4 46.0 30 TAAGTCG 60 0.0 46.0 39 CGATTAT 20 6.313277E-4 46.0 14 CGATTAC 20 6.313277E-4 46.0 22 GCGCATA 85 0.0 46.0 33 >>END_MODULE