##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1527992_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 3650550 Sequences flagged as poor quality 0 Sequence length 52 %GC 57 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.87527358891126 33.0 31.0 34.0 30.0 34.0 2 32.246340688389424 34.0 31.0 34.0 30.0 34.0 3 32.45687581323362 34.0 31.0 34.0 30.0 34.0 4 36.076599964388926 37.0 35.0 37.0 35.0 37.0 5 36.05493500979304 37.0 35.0 37.0 35.0 37.0 6 36.18354823245812 37.0 37.0 37.0 35.0 37.0 7 36.3296481352125 37.0 37.0 37.0 35.0 37.0 8 36.17022914355371 37.0 37.0 37.0 35.0 37.0 9 37.79872512361151 39.0 38.0 39.0 35.0 39.0 10 37.16092369642931 39.0 37.0 39.0 33.0 39.0 11 38.11174836668447 39.0 38.0 39.0 37.0 39.0 12 38.108273273890234 39.0 39.0 39.0 37.0 39.0 13 38.10848255742285 39.0 39.0 39.0 37.0 39.0 14 38.765849255591625 40.0 39.0 40.0 36.0 40.0 15 38.167317527495854 40.0 38.0 40.0 34.0 40.0 16 37.630656750352685 40.0 37.0 40.0 33.0 40.0 17 37.667831696593666 40.0 37.0 40.0 33.0 40.0 18 37.73673282108175 40.0 37.0 40.0 33.0 40.0 19 37.85207050992316 40.0 38.0 40.0 33.0 40.0 20 37.84745723247182 40.0 37.0 40.0 33.0 40.0 21 37.84371889167386 40.0 37.0 40.0 33.0 40.0 22 37.81287230691266 40.0 37.0 40.0 33.0 40.0 23 37.741236799934256 40.0 37.0 40.0 33.0 40.0 24 37.70592184739286 40.0 37.0 40.0 33.0 40.0 25 37.63441645779403 40.0 37.0 40.0 33.0 40.0 26 37.62098040021367 40.0 37.0 40.0 33.0 40.0 27 37.60002574954459 40.0 37.0 40.0 33.0 40.0 28 37.425976907589266 40.0 37.0 40.0 33.0 40.0 29 37.54545945131556 40.0 37.0 40.0 33.0 40.0 30 37.551660708660336 40.0 37.0 40.0 33.0 40.0 31 37.57043513991042 40.0 37.0 40.0 33.0 40.0 32 37.49520784539316 40.0 36.0 40.0 33.0 40.0 33 37.43138513374697 40.0 36.0 40.0 33.0 40.0 34 37.37719576502171 40.0 36.0 40.0 33.0 40.0 35 37.23334894741888 40.0 35.0 40.0 33.0 40.0 36 36.781704400706744 39.0 35.0 40.0 31.0 40.0 37 36.85853501527167 39.0 35.0 40.0 32.0 40.0 38 36.773052005862134 39.0 35.0 40.0 32.0 40.0 39 36.704290586350005 39.0 35.0 40.0 32.0 40.0 40 36.56336113736286 39.0 35.0 40.0 31.0 40.0 41 36.42881346646396 39.0 35.0 40.0 31.0 40.0 42 36.128875648874825 38.0 35.0 40.0 31.0 40.0 43 35.97611264056101 38.0 35.0 40.0 30.0 40.0 44 35.834960485406306 38.0 35.0 40.0 30.0 40.0 45 35.43518757447508 37.0 35.0 40.0 29.0 40.0 46 35.4158882908055 37.0 35.0 40.0 29.0 40.0 47 35.34565613400721 37.0 35.0 40.0 29.0 40.0 48 35.181604963635614 36.0 34.0 40.0 29.0 40.0 49 35.03966361233239 36.0 34.0 40.0 29.0 40.0 50 34.80600019175193 36.0 34.0 39.0 28.0 40.0 51 34.710105052663295 35.0 34.0 39.0 28.0 40.0 52 34.21916067441892 35.0 33.0 39.0 27.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 5.0 13 5.0 14 15.0 15 27.0 16 66.0 17 189.0 18 495.0 19 981.0 20 1706.0 21 2790.0 22 4404.0 23 6951.0 24 10572.0 25 15188.0 26 21004.0 27 28076.0 28 37603.0 29 48875.0 30 62520.0 31 78460.0 32 97256.0 33 125637.0 34 184363.0 35 328590.0 36 334866.0 37 640967.0 38 1094990.0 39 523948.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 28.840010409390366 18.65094300858775 35.30755639561162 17.20149018641027 2 22.68107545438359 21.028831272000108 35.76798016737204 20.522113106244262 3 27.22151456629823 21.775540671953543 34.20643464683404 16.79651011491419 4 33.443289367355604 26.7989481037104 31.758255605319746 7.999506923614249 5 0.0 0.0 0.0 100.0 6 0.0 0.0 0.0 100.0 7 0.0 0.0 100.0 0.0 8 0.0 100.0 0.0 0.0 9 100.0 0.0 0.0 0.0 10 0.0 100.0 0.0 0.0 11 99.46797057977565 0.36328772376765145 0.07103039268055499 0.09771130377614333 12 99.51930531015874 0.36627357521469367 0.04473298544055006 0.06968812918601307 13 98.61020942049828 0.788675679007273 0.13392502499623343 0.4671898754982126 14 65.85574776403556 23.535741189683744 3.895933489474189 6.712577556806508 15 33.89360507320814 25.439125611209267 17.131035049513088 23.536234266069496 16 28.76550108887702 15.08978099190533 29.96638862637137 26.178329292846282 17 21.557025653668624 16.29477749928093 31.79764692991467 30.350549917135773 18 23.432660831929436 16.79505827888948 34.50669077262331 25.265590116557778 19 24.45056224404542 17.21318705400556 30.263631507581053 28.07261919436797 20 26.990754817767186 17.797893468107546 26.99987673090356 28.211474983221706 21 29.938201092985988 18.946460122447302 21.914341674542193 29.200997110024517 22 30.097820876306308 18.979797564750516 23.096738847570915 27.82564271137226 23 29.7362041336237 20.180767281642492 20.895974579173 29.18705400556081 24 29.823779978359426 20.427058936324663 21.489802906411363 28.25935817890455 25 30.981112435112518 19.22397994822698 22.73356069633343 27.061346920327072 26 31.407815260714138 17.71428962759036 22.555806659270523 28.322088452424975 27 31.00064373861473 21.18516387941543 21.356343564668336 26.457848817301503 28 31.281094629576366 20.374162797386695 20.27053457698155 28.07420799605539 29 30.86940324060758 20.159318458862362 19.875607785128267 29.09567051540179 30 30.119324485351523 20.361178452561944 19.74360027940995 29.775896782676583 31 29.0250784128419 19.146429990001508 20.707811151744256 31.120680445412336 32 30.18142471682349 20.427524619577873 20.53200202709181 28.859048636506827 33 31.565051841503333 19.977044554930078 20.577803344701483 27.880100258865102 34 28.567613099395984 20.52613989672789 22.101847666789936 28.804399337086195 35 31.35018010984646 21.57329717439838 19.628220405144432 27.44830231061073 36 33.611373628631306 20.883154593143498 20.143759159578696 25.361712618646504 37 32.493925572858885 20.120118886195232 20.454260316938544 26.931695224007342 38 30.578022489761818 23.54497267535029 21.84090068619797 24.036104148689923 39 31.597375737902507 23.397405870348305 22.693155825834463 22.312062565914726 40 32.57580364602594 22.54449329553081 20.388379833175822 24.491323225267426 41 32.27239730999438 23.452493459889606 18.619797016887865 25.655312213228143 42 32.28077960855214 23.244250866307816 19.86941693717385 24.605552587966198 43 32.361178452561944 22.32055443700264 19.376340551423755 25.94192655901166 44 30.340441851227894 24.31671939844681 20.307926202900934 25.03491254742436 45 29.766802262672748 22.455575187300543 21.139280382408128 26.63834216761858 46 27.44370026434373 22.991658791141063 21.250195176069358 28.31444576844585 47 29.483694237854568 20.535371382394434 23.04800646477928 26.932927914971717 48 29.730588541452658 20.010135459040416 22.02306501760009 28.236210981906833 49 29.517853474134036 19.904041856706524 23.578501869581295 26.99960279957815 50 30.1815616824862 20.888468860856584 21.244552190765774 27.685417265891445 51 27.831093944748055 22.03572064483434 22.66146197148375 27.47172343893386 52 29.79090821930942 21.558724027886207 22.227335606963333 26.423032145841034 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 8.5 10 17.0 11 42.5 12 68.0 13 219.5 14 571.5 15 772.0 16 1156.5 17 1541.0 18 1986.5 19 2432.0 20 2393.0 21 2354.0 22 2949.5 23 3545.0 24 4926.5 25 6308.0 26 7535.0 27 8762.0 28 11958.5 29 15155.0 30 16806.5 31 18458.0 32 19537.5 33 20617.0 34 21399.5 35 22182.0 36 26575.5 37 30969.0 38 34719.0 39 40392.0 40 42315.0 41 50864.0 42 59413.0 43 67319.5 44 75226.0 45 84543.5 46 93861.0 47 108628.0 48 123395.0 49 140375.5 50 157356.0 51 168087.5 52 178819.0 53 199160.5 54 219502.0 55 239323.5 56 259145.0 57 298431.5 58 337718.0 59 356623.5 60 375529.0 61 371982.0 62 368435.0 63 341835.0 64 284595.5 65 253956.0 66 228125.5 67 202295.0 68 177681.5 69 153068.0 70 128758.5 71 104449.0 72 88796.5 73 73144.0 74 58644.5 75 44145.0 76 33155.0 77 22165.0 78 16959.5 79 11754.0 80 8540.5 81 5327.0 82 3049.0 83 771.0 84 870.5 85 970.0 86 561.0 87 152.0 88 170.5 89 192.0 90 195.0 91 98.0 92 1.0 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 52 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 52 3650550.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 6.798996538396825 #Duplication Level Percentage of deduplicated Percentage of total 1 71.59910018419214 4.868020343046498 2 9.188293406095168 1.2494235012363084 3 4.447892571012809 0.9072361858043112 4 2.7279241333343487 0.7418858695819758 5 1.6445753504441503 0.559073105740126 6 1.0498684678824155 0.4282831247342712 7 0.7485136341391777 0.35623991252185677 8 0.4767171146144164 0.25929584096463515 9 0.34772232847893036 0.21277466168863776 >10 2.5077537859087626 3.691578178998165 >50 1.0037355898658749 5.124401535188162 >100 3.835344179269804 61.32945512311833 >500 0.38521290553278775 17.07565143570792 >1k 0.03734634922921362 3.1966811816688154 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.024900357480379668 0.0 0.0 0.0 0.0 9 0.024900357480379668 0.0 0.0 0.0 0.0 10 0.0293380449521305 0.0 0.0 0.0 0.0 11 0.029447617482297187 0.0 0.0 0.0 0.0 12 0.03265261398967279 0.0 0.0 0.0 0.0 13 0.03744641218446535 0.0 0.0 0.0 0.0 14 0.0510060127925929 0.0 0.0 0.0 0.0 15 0.07283833942830532 0.0 0.0 0.0 0.0 16 0.0845078138910575 0.0 0.0 0.0 0.0 17 0.09614989522126803 0.0 0.0 0.0 0.0 18 0.10801112161181192 0.0 0.0 0.0 0.0 19 0.119105340291189 0.0 0.0 0.0 0.0 20 0.1285285778855241 0.0 0.0 0.0 0.0 21 0.1405815562038597 0.0 0.0 0.0 0.0 22 0.1536754735587788 0.0 0.0 0.0 0.0 23 0.16698853597403132 0.0 0.0 0.0 0.0 24 0.17928805248524196 0.0 0.0 0.0 0.0 25 0.19320376381641122 0.0 0.0 0.0 0.0 26 0.20835216611195573 0.0 0.0 0.0 0.0 27 0.22517154949254223 0.0 0.0 0.0 0.0 28 0.23977208913725329 0.0 0.0 0.0 0.0 29 0.25856377806084013 0.0 0.0 0.0 0.0 30 0.28428592951746995 0.0 0.0 0.0 0.0 31 0.3068030844667242 0.0 0.0 0.0 0.0 32 0.3262248154387695 0.0 0.0 0.0 0.0 33 0.34016791990248046 0.0 0.0 0.0 0.0 34 0.3539192724383997 0.0 0.0 0.0 0.0 35 0.36671186533536043 0.0 0.0 0.0 0.0 36 0.37953185136486284 0.0 0.0 0.0 0.0 37 0.3917217953459068 0.0 0.0 0.0 0.0 38 0.4056922929421594 0.0 0.0 0.0 0.0 39 0.4223473175274959 0.0 0.0 0.0 0.0 40 0.44538494199504186 0.0 0.0 0.0 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTCGATA 40 5.6170393E-9 46.000004 36 CCCTATA 105 0.0 46.000004 45 ATAATAC 20 6.313267E-4 46.000004 31 ATAGCCG 75 0.0 46.000004 42 ATATCGT 20 6.313267E-4 46.000004 30 ATATCGA 40 5.6170393E-9 46.000004 30 TTGACGT 40 5.6170393E-9 46.000004 39 CGGGATA 20 6.313267E-4 46.000004 37 TTAGTCG 40 5.6170393E-9 46.000004 20 TATAGCG 20 6.313267E-4 46.000004 24 AGTACGG 20 6.313267E-4 46.000004 29 TCGGTAC 20 6.313267E-4 46.000004 46 GCCGTAA 40 5.6170393E-9 46.000004 31 ACGGTTA 20 6.313267E-4 46.000004 38 TCGTTAA 50 1.6370905E-11 46.0 33 ACGTTGA 30 1.8625251E-6 46.0 24 ATTACCG 25 3.418628E-5 46.0 16 ACCGATT 45 3.110472E-10 46.0 42 CAATTCG 50 1.6370905E-11 46.0 25 TAACGGG 30 1.8625251E-6 46.0 35 >>END_MODULE