##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1527989_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 10113588 Sequences flagged as poor quality 0 Sequence length 52 %GC 53 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.736400573169483 31.0 31.0 34.0 30.0 34.0 2 32.20283276320926 34.0 31.0 34.0 30.0 34.0 3 32.416415222767625 34.0 31.0 34.0 30.0 34.0 4 35.98587860213408 37.0 35.0 37.0 35.0 37.0 5 35.96395631303154 37.0 35.0 37.0 35.0 37.0 6 35.726448318836006 37.0 35.0 37.0 33.0 37.0 7 36.1310150265168 37.0 35.0 37.0 35.0 37.0 8 35.94015496775229 37.0 35.0 37.0 35.0 37.0 9 38.101086281149676 39.0 39.0 39.0 35.0 39.0 10 38.199400549043524 39.0 39.0 39.0 37.0 39.0 11 38.115782252549735 39.0 38.0 39.0 37.0 39.0 12 38.08650510580419 39.0 39.0 39.0 37.0 39.0 13 38.10917164116236 39.0 39.0 39.0 37.0 39.0 14 38.7094387273834 40.0 39.0 40.0 36.0 40.0 15 38.249663324232706 40.0 38.0 40.0 34.0 40.0 16 37.59104919045546 40.0 36.0 40.0 33.0 40.0 17 37.56556792703044 40.0 36.0 40.0 33.0 40.0 18 37.53669963617264 40.0 36.0 40.0 33.0 40.0 19 37.65361432559839 40.0 37.0 40.0 33.0 40.0 20 37.61332180033436 40.0 36.0 40.0 33.0 40.0 21 37.54772381473321 40.0 36.0 40.0 33.0 40.0 22 37.50737354537282 40.0 36.0 40.0 33.0 40.0 23 37.46588411550876 40.0 36.0 40.0 33.0 40.0 24 37.46931731844327 40.0 36.0 40.0 33.0 40.0 25 37.44308686491876 40.0 36.0 40.0 33.0 40.0 26 37.47872545332082 40.0 36.0 40.0 33.0 40.0 27 37.53243112137849 40.0 36.0 40.0 33.0 40.0 28 37.40119609380964 40.0 36.0 40.0 33.0 40.0 29 37.493634207760884 40.0 36.0 40.0 33.0 40.0 30 37.51641899986434 40.0 36.0 40.0 33.0 40.0 31 37.52781426334551 40.0 36.0 40.0 33.0 40.0 32 37.4816982855145 40.0 35.0 40.0 33.0 40.0 33 37.411309517453155 40.0 35.0 40.0 33.0 40.0 34 37.338461978083345 40.0 35.0 40.0 33.0 40.0 35 37.18065141668812 40.0 35.0 40.0 33.0 40.0 36 36.7618259711588 40.0 35.0 40.0 32.0 40.0 37 36.86682886429623 39.0 35.0 40.0 32.0 40.0 38 36.746347784782216 39.0 35.0 40.0 31.0 40.0 39 36.68730484176338 39.0 35.0 40.0 31.0 40.0 40 36.645534206060205 39.0 35.0 40.0 31.0 40.0 41 36.557263851365114 39.0 35.0 40.0 31.0 40.0 42 36.28076029990543 39.0 35.0 40.0 31.0 40.0 43 36.14998514869303 39.0 35.0 40.0 31.0 40.0 44 36.017310078282804 38.0 35.0 40.0 30.0 40.0 45 35.61935269658997 38.0 35.0 40.0 29.0 40.0 46 35.6365811025721 38.0 35.0 40.0 29.0 40.0 47 35.583194213566934 38.0 35.0 40.0 30.0 40.0 48 35.433656779374445 37.0 35.0 40.0 29.0 40.0 49 35.300661249004804 37.0 35.0 40.0 29.0 40.0 50 35.07926563747703 37.0 34.0 40.0 28.0 40.0 51 34.989958855353805 37.0 34.0 40.0 28.0 40.0 52 34.463278709791226 36.0 34.0 39.0 27.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 0.0 12 5.0 13 3.0 14 8.0 15 61.0 16 110.0 17 375.0 18 1003.0 19 2138.0 20 4307.0 21 7619.0 22 12190.0 23 19062.0 24 28628.0 25 41083.0 26 58405.0 27 79205.0 28 106238.0 29 140351.0 30 181854.0 31 228311.0 32 281589.0 33 359865.0 34 544519.0 35 1056320.0 36 777102.0 37 1433985.0 38 2990436.0 39 1758815.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 28.92390910130015 20.690500740192302 34.47006146582202 15.915528692685523 2 26.81115742504045 20.97723379674948 34.1004102599394 18.111198518270665 3 19.757182119738317 22.397352947341734 35.62315372150813 22.222311211411817 4 22.343237632381307 20.53343482056022 34.44345369813364 22.679873848924835 5 100.0 0.0 0.0 0.0 6 0.0 100.0 0.0 0.0 7 0.0 0.0 100.0 0.0 8 0.0 0.0 0.0 100.0 9 0.0 0.0 100.0 0.0 10 0.0 0.0 100.0 0.0 11 99.48856923971987 0.320351194847961 0.13809144687325606 0.052988118558913014 12 99.06571238614822 0.6673002696965705 0.14953150157985476 0.11745584257535505 13 96.55805634953688 1.902915167198822 0.5057255644584295 1.0333029188058678 14 53.546496060547454 25.084282650232538 7.35202976431312 14.017191524906888 15 34.419159649374684 23.057267114302064 19.746345213983403 22.777228022339845 16 31.710694562602313 16.54644227152619 27.114610561553427 24.62825260431807 17 24.428887156566 16.620540603394165 29.260644194721003 29.68992804531883 18 22.370468324396843 19.72536354061486 33.011785728269736 24.892382406718568 19 27.17997806515353 19.173244945315155 29.801747905886618 23.845029083644697 20 31.175315822633863 18.820284156325133 25.882159724125604 24.122240296915397 21 31.561192724085657 20.46528887670726 22.951478743251158 25.02203965595593 22 30.74926524592459 21.2625232508977 24.330919946511564 23.65729155666614 23 28.980970947204888 23.642509463505927 22.300572259815212 25.07594732947397 24 28.3420087905499 25.770972675572708 22.03525593488681 23.851762598990586 25 28.235221763038005 22.951458967875695 25.110119178277778 23.703200090808522 26 27.593144984747255 21.204858256041277 25.1661131539074 26.035883605304072 27 29.841773265828113 21.990771227777916 23.630782665855087 24.536672840538888 28 32.35641000997865 21.107039361302835 21.24800812530627 25.28854250341224 29 30.961118843282918 20.259526094992204 20.099681735107264 28.679673326617618 30 26.934170148121517 20.801173628983108 22.57414480400032 29.690511418895056 31 24.97603224493622 21.287637977738463 22.533773374988183 31.202556402337134 32 26.122776605098014 25.068314034544414 20.732503637680317 28.076405722677254 33 30.112448717507572 24.38354222062437 20.452098701271993 25.051910360596064 34 28.881599685492425 22.924940189376905 23.575451165303548 24.618008959827115 35 31.94029655944063 22.12670715872547 22.456214352413802 23.476781929420103 36 34.43855929270601 21.04038645829749 21.144820216129034 23.376234032867465 37 32.77505470857622 21.60987772094335 22.63362913339954 22.981438437080886 38 29.012819189391543 23.922360689401227 25.524611048027662 21.540209073179568 39 27.422532932921527 26.9778341771486 25.23395257944065 20.365680310489214 40 28.675728139212314 28.982780394059954 20.810922889087433 21.5305685776403 41 30.576042844537465 27.324743701246284 20.24903525830793 21.850178195908317 42 30.437733868534096 27.048076310800873 19.680819507379578 22.833370313285453 43 29.80208408726952 24.935641040548617 20.05890491089809 25.203369961283773 44 28.696521946513936 24.284576354108946 20.333723303737507 26.685178395639607 45 25.256941453418907 25.347967506685066 22.17712447847391 27.21796656142212 46 25.525421838421735 24.25243148129032 22.30925364964442 27.912893030643527 47 26.55369192417172 21.529589696554773 22.209832949493297 29.70688542978021 48 27.50964346184559 21.355961899970612 21.188227165275073 29.946167472908726 49 28.873195150919734 22.261436791769647 21.61823281707738 27.247135240233238 50 27.954984917321134 25.006496210840307 20.879177597505453 26.1593412743331 51 26.047373098449334 25.036287813978582 22.26570827287012 26.650630814701966 52 26.77191319242983 23.496112358937303 23.429281477552774 26.302692971080095 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 1.5 4 3.0 5 18.5 6 34.0 7 61.5 8 89.0 9 433.5 10 778.0 11 1708.5 12 2639.0 13 4199.5 14 7815.0 15 9870.0 16 10843.0 17 11816.0 18 13489.0 19 15162.0 20 18749.0 21 22336.0 22 27310.5 23 32285.0 24 40236.0 25 48187.0 26 55370.5 27 62554.0 28 69095.5 29 75637.0 30 81128.0 31 86619.0 32 89057.5 33 91496.0 34 102021.5 35 112547.0 36 123455.5 37 134364.0 38 151529.0 39 191393.0 40 214092.0 41 237135.0 42 260178.0 43 310562.0 44 360946.0 45 395899.0 46 430852.0 47 482875.0 48 534898.0 49 568498.5 50 602099.0 51 637402.5 52 672706.0 53 741522.5 54 810339.0 55 859232.5 56 908126.0 57 957659.5 58 1007193.0 59 999988.0 60 992783.0 61 886116.5 62 779450.0 63 662609.5 64 462255.0 65 378741.0 66 313666.0 67 248591.0 68 213952.0 69 179313.0 70 154031.0 71 128749.0 72 105168.5 73 81588.0 74 66184.5 75 50781.0 76 39229.5 77 27678.0 78 19489.5 79 11301.0 80 7507.5 81 3714.0 82 3040.5 83 2367.0 84 1349.0 85 331.0 86 216.5 87 102.0 88 64.5 89 15.5 90 4.0 91 2.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 52 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 52 1.0113588E7 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 8.262873515055245 #Duplication Level Percentage of deduplicated Percentage of total 1 72.50504100057603 5.990999829916543 2 9.067566290288141 1.4984830669205924 3 4.255608036387129 1.0549065280295842 4 2.62187897703557 0.866570174361094 5 1.568247578691278 0.6479115691508839 6 1.0897488973337268 0.5402674381103705 7 0.72151777056443 0.41732670539269756 8 0.5535920772320753 0.36594090504842663 9 0.40392648017811666 0.30038340735839225 >10 2.9021479405107544 5.015189268729649 >50 0.9633777198342216 5.911960100160125 >100 3.0058848220599717 57.225685995065476 >500 0.30651154414381887 16.529916022973964 >1k 0.03495086516481181 3.6344589887824084 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 0.0 0.0 10 0.0 0.0 0.0 0.0 0.0 11 0.0018094468550627137 0.0 0.0 0.0 0.0 12 0.0024422588699480343 0.0 0.0 0.0 0.0 13 0.006199580208329626 0.0 0.0 0.0 0.0 14 0.03422128724247023 0.0 0.0 0.0 0.0 15 0.070350898217329 0.0 0.0 0.0 0.0 16 0.08906829109510887 0.0 0.0 0.0 0.0 17 0.10508634522189356 0.0 0.0 0.0 0.0 18 0.12436733630043066 0.0 0.0 0.0 0.0 19 0.14412293639013177 0.0 0.0 0.0 0.0 20 0.1663306830375135 0.0 0.0 0.0 0.0 21 0.18487998522383944 0.0 0.0 0.0 0.0 22 0.20448726999755182 0.0 0.0 0.0 0.0 23 0.22713996259289976 0.0 0.0 0.0 0.0 24 0.25065288402098246 0.0 0.0 0.0 0.0 25 0.2738592871293551 0.0 0.0 0.0 0.0 26 0.2990630031597095 0.0 0.0 0.0 0.0 27 0.326422235115767 0.0 0.0 0.0 0.0 28 0.35520529410531654 0.0 0.0 0.0 0.0 29 0.38516498793504345 0.0 0.0 0.0 0.0 30 0.4193566121143159 0.0 0.0 0.0 0.0 31 0.45170912637532795 0.0 0.0 0.0 0.0 32 0.4823807337218008 0.0 0.0 0.0 0.0 33 0.5074262467484338 0.0 0.0 0.0 0.0 34 0.5316016432545997 0.0 0.0 0.0 0.0 35 0.5536017484595971 0.0 0.0 0.0 0.0 36 0.5755326398504665 0.0 0.0 0.0 0.0 37 0.5986105030183155 0.0 0.0 0.0 0.0 38 0.6268596268703056 0.0 0.0 0.0 0.0 39 0.6631672162243508 0.0 0.0 0.0 0.0 40 0.7115476722998801 0.0 0.0 0.0 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ACTCGAT 3315 0.0 43.22474 1 CCGATCT 39505 0.0 43.083157 3 ATCGATC 18855 0.0 42.962612 2 TACCGAT 3530 0.0 42.937675 1 AGATCTT 223520 0.0 42.925377 4 AATCGAT 4615 0.0 42.86024 1 TTGGGGC 159130 0.0 42.7913 9 TTCGATC 30600 0.0 42.783005 2 CGAATAT 70 0.0 42.714283 46 TTGGGAC 38800 0.0 42.698196 9 TTAGATC 31445 0.0 42.613453 2 TAGATCT 84105 0.0 42.551575 3 ATGCGAT 3650 0.0 42.47123 1 TGCCGAT 5590 0.0 42.461536 1 CTCGATC 17610 0.0 42.447475 2 CGGATCT 51375 0.0 42.431923 3 CATATGC 6880 0.0 42.389534 37 TATCGAT 5965 0.0 42.375523 1 ACACGAT 2910 0.0 42.36426 1 CGATCTT 247495 0.0 42.360817 4 >>END_MODULE