##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1527968_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1946718 Sequences flagged as poor quality 0 Sequence length 52 %GC 59 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.888720400181228 31.0 31.0 34.0 30.0 34.0 2 32.21897984196992 34.0 31.0 34.0 30.0 34.0 3 32.33634301424243 34.0 31.0 34.0 30.0 34.0 4 36.02735116231524 37.0 35.0 37.0 35.0 37.0 5 36.07682776858282 37.0 35.0 37.0 35.0 37.0 6 36.09901896422594 37.0 35.0 37.0 35.0 37.0 7 36.03582696620671 37.0 35.0 37.0 35.0 37.0 8 35.779310100384336 37.0 35.0 37.0 33.0 37.0 9 37.32837216278886 39.0 37.0 39.0 34.0 39.0 10 37.34407294739145 39.0 37.0 39.0 34.0 39.0 11 37.88721222077363 39.0 37.0 39.0 35.0 39.0 12 37.986555320287785 39.0 38.0 39.0 35.0 39.0 13 38.06951854351786 39.0 39.0 39.0 37.0 39.0 14 38.76422060103209 40.0 39.0 40.0 36.0 40.0 15 38.09034744631734 40.0 38.0 40.0 34.0 40.0 16 37.4372199774184 40.0 36.0 40.0 33.0 40.0 17 37.38451588776597 40.0 36.0 40.0 33.0 40.0 18 37.426908776720616 40.0 37.0 40.0 33.0 40.0 19 37.51353817039756 40.0 37.0 40.0 33.0 40.0 20 37.56518663720169 40.0 37.0 40.0 33.0 40.0 21 37.57148133422509 40.0 37.0 40.0 33.0 40.0 22 37.511085324119875 40.0 37.0 40.0 33.0 40.0 23 37.427106031792995 40.0 36.0 40.0 33.0 40.0 24 37.403987120887564 40.0 36.0 40.0 33.0 40.0 25 37.30476216894281 40.0 36.0 40.0 32.0 40.0 26 37.30766757177979 40.0 36.0 40.0 33.0 40.0 27 37.34724700752754 40.0 36.0 40.0 33.0 40.0 28 37.17121329334809 40.0 36.0 40.0 32.0 40.0 29 37.30546026697241 40.0 36.0 40.0 33.0 40.0 30 37.29271779477048 40.0 36.0 40.0 33.0 40.0 31 37.30476627842348 40.0 36.0 40.0 33.0 40.0 32 37.2159151967568 40.0 35.0 40.0 33.0 40.0 33 37.1509222188319 40.0 35.0 40.0 33.0 40.0 34 37.07622007912805 40.0 35.0 40.0 32.0 40.0 35 36.89949905430576 39.0 35.0 40.0 32.0 40.0 36 36.432851085776164 39.0 35.0 40.0 31.0 40.0 37 36.48703458847147 39.0 35.0 40.0 31.0 40.0 38 36.39621814767213 39.0 35.0 40.0 31.0 40.0 39 36.29051870892446 38.0 35.0 40.0 31.0 40.0 40 36.151463642910784 38.0 35.0 40.0 31.0 40.0 41 35.991536524550554 38.0 35.0 40.0 31.0 40.0 42 35.70148115957216 37.0 35.0 40.0 30.0 40.0 43 35.490606240862824 37.0 35.0 40.0 30.0 40.0 44 35.33877531311674 37.0 34.0 40.0 29.0 40.0 45 34.93483596494202 36.0 34.0 40.0 28.0 40.0 46 34.900295779871556 36.0 34.0 40.0 28.0 40.0 47 34.803530865795665 35.0 34.0 39.0 28.0 40.0 48 34.62847572170186 35.0 34.0 39.0 28.0 40.0 49 34.48107275938271 35.0 34.0 39.0 28.0 40.0 50 34.24475501844643 35.0 34.0 39.0 27.0 40.0 51 34.16388968510077 35.0 34.0 38.0 27.0 40.0 52 33.6515910368117 35.0 33.0 37.0 26.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 3.0 12 3.0 13 4.0 14 11.0 15 13.0 16 46.0 17 129.0 18 319.0 19 645.0 20 1180.0 21 2035.0 22 3238.0 23 4725.0 24 6770.0 25 9617.0 26 12995.0 27 17529.0 28 23535.0 29 29992.0 30 37778.0 31 47059.0 32 59344.0 33 75432.0 34 110041.0 35 191829.0 36 201525.0 37 359628.0 38 541373.0 39 209919.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 33.08116532543492 19.34137353227329 30.877559050668868 16.699902091622924 2 35.32997588762214 19.334541520651683 28.112700452762034 17.222782138964142 3 26.766742794796166 20.149965223519793 32.383837823454655 20.69945415822939 4 26.236517050749004 18.34138277860481 35.652518752074 19.769581418572184 5 0.0 0.0 0.0 100.0 6 0.0 0.0 100.0 0.0 7 0.0 0.0 0.0 100.0 8 100.0 0.0 0.0 0.0 9 0.0 0.0 0.0 100.0 10 0.0 100.0 0.0 0.0 11 99.5344472080702 0.41711228847732434 0.03451963766708892 0.013920865785388536 12 99.56747715899272 0.2903861781726989 0.10248017432417023 0.03965648851040572 13 98.87431050619556 0.7355456722545329 0.17901925188959059 0.2111245696603206 14 69.25019442980442 21.322605534032153 3.4237110870706493 6.00348894909278 15 34.76204565838504 29.573826306635066 15.462280617942609 20.201847417037293 16 32.26964562920772 15.987215405621152 26.335761009041885 25.40737795612924 17 23.00328039294854 17.967985090804113 29.216147382414913 29.81258713383243 18 23.37328775919265 19.17185745444384 30.502106622530846 26.95274816383267 19 24.891997711019265 20.128339081469427 27.664202005632042 27.315461201879266 20 28.161962852349443 17.876446408776207 26.552536114629856 27.4090546242445 21 30.46306655612164 19.015697188807007 22.53916591925487 27.982070335816488 22 28.664963286927026 20.130958875399518 22.369855315459148 28.834222522214308 23 29.289861192016513 19.018316982737097 23.352123933718186 28.339697891528203 24 30.078778744533107 20.33329943011777 22.135717654020766 27.452204171328358 25 31.061201468317446 18.097741943106293 23.898736231955528 26.94232035662073 26 29.350219189425488 19.474623443148932 23.187076916122418 27.988080451303166 27 30.860812916919656 21.265226910112304 20.743322864431317 27.130637308536727 28 29.842432237232103 22.004573851990887 19.72545586982809 28.427538040948917 29 29.345698760683366 20.56651245840435 21.72682432689275 28.360964454019534 30 29.522509166710332 21.29887328313603 21.4321745625201 27.746442987633547 31 29.106064668842635 19.33628804993841 22.251245429486964 29.306401851731994 32 30.14108874526254 19.429932840812075 22.028819787971344 28.40015862595404 33 28.64806304765251 21.449691223895808 21.560493096586153 28.34175263186553 34 27.48631286092798 21.26193932557258 23.915996050789072 27.335751762710363 35 30.910486264574534 21.43299645865503 19.628831705465302 28.02768557130514 36 31.701407188920015 21.460838190225807 21.189920676749278 25.647833944104896 37 30.705217704875594 22.678631419650923 22.035754536609822 24.580396338863668 38 30.37168197961903 23.210346850442644 21.858481814006957 24.55948935593137 39 30.56914252603613 22.87398585722226 24.065529778838023 22.49134183790359 40 30.63741127374381 23.27645812079613 21.372432987212324 24.71369761824774 41 29.79440268184709 23.917896685601097 20.54426989425279 25.743430738299022 42 30.67727323628795 22.8093129051049 20.441738351420184 26.07167550718697 43 30.75910327022198 21.966201576191313 20.520332169322934 26.754362984263768 44 31.008035062089117 21.81373984316167 19.758074872683153 27.420150222066063 45 28.255196695155643 21.75892964466348 21.25818942445696 28.72768423572392 46 28.871516059336795 22.140597662321916 21.541435379957445 27.446450898383844 47 28.997933958590817 20.353538622440436 24.334803500044693 26.313723918924055 48 28.938500594333643 19.71893206925708 23.044837516270974 28.297729820138308 49 29.198065667446443 20.352819463322373 22.67893963070152 27.77017523852967 50 28.21805726355846 21.508867745610818 22.41690886918393 27.85616612164679 51 28.090560625627337 22.096523482086262 22.576253982343616 27.236661909942782 52 30.121157763990468 21.535836212538232 21.813483000619506 26.52952302285179 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 2.0 10 4.0 11 10.5 12 17.0 13 38.5 14 102.5 15 145.0 16 260.0 17 375.0 18 494.5 19 614.0 20 768.0 21 922.0 22 1174.5 23 1427.0 24 1683.0 25 1939.0 26 2851.5 27 3764.0 28 4292.5 29 4821.0 30 6536.0 31 8251.0 32 9342.5 33 10434.0 34 11734.5 35 13035.0 36 13489.0 37 13943.0 38 15734.5 39 18917.0 40 20308.0 41 26023.0 42 31738.0 43 33684.5 44 35631.0 45 37108.5 46 38586.0 47 44320.5 48 50055.0 49 53523.5 50 56992.0 51 64790.5 52 72589.0 53 82312.5 54 92036.0 55 102991.5 56 113947.0 57 125402.5 58 136858.0 59 155758.0 60 174658.0 61 182400.5 62 190143.0 63 201236.0 64 194021.0 65 175713.0 66 158960.0 67 142207.0 68 124690.5 69 107174.0 70 92563.0 71 77952.0 72 64559.0 73 51166.0 74 47750.0 75 44334.0 76 34508.0 77 24682.0 78 17724.0 79 10766.0 80 8405.5 81 6045.0 82 4237.0 83 2429.0 84 1681.5 85 934.0 86 523.5 87 113.0 88 81.0 89 27.5 90 6.0 91 3.5 92 1.0 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 52 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 52 1946718.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 8.1015783768629 #Duplication Level Percentage of deduplicated Percentage of total 1 73.82382009133521 5.980894645493782 2 9.308675433662023 1.5082992722118223 3 4.2424454750228895 1.0311151357639587 4 2.526980376926987 0.8189011832187416 5 1.5324131948316366 0.620748280183369 6 0.9081342944985112 0.441439269815807 7 0.6699439023025844 0.3799322122824038 8 0.449721362997079 0.2914762296056357 9 0.3138991143796259 0.22887704498169525 >10 2.321610233425379 4.006890547111583 >50 0.676859703376045 4.07101671372129 >100 2.811571075562033 56.59978158324223 >500 0.37097118358110154 19.58732237019052 >1k 0.04295455809886439 4.4333055121771565 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GGACCTCGCAGGGGGGCGTAACCCGAGGCCACCGAAAACCCGAGATGCAGAC 2468 0.1267774788130587 No Hit TGATCTCGCAGGGGACACAGGATCTGGAGCTGGTGCTGATAACAGCGGAATC 2378 0.12215431305407358 No Hit CCTACTCGCAGGGGGACTGTAGCGGTGAAGGGCCGGAGGGGGCTCTGCGTTC 2225 0.11429493126379887 No Hit ATGCCTCGCAGGGGGTAACCGCTGGAGGCTTCTGCTGACGGCGTCGGACCTG 2143 0.11008271357227908 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 0.0 0.0 10 0.02470825255635382 0.0 0.0 0.0 0.0 11 0.025632885708150848 0.0 0.0 0.0 0.0 12 0.026557518859947872 0.0 0.0 0.0 0.0 13 0.027995837096076576 0.0 0.0 0.0 0.0 14 0.03523879678515327 0.0 0.0 0.0 0.0 15 0.047002185216348746 0.0 0.0 0.0 0.0 16 0.056608096293351166 0.0 0.0 0.0 0.0 17 0.06323463388122984 0.0 0.0 0.0 0.0 18 0.07320012451726444 0.0 0.0 0.0 0.0 19 0.0853230925074921 0.0 0.0 0.0 0.0 20 0.09523721463509352 0.0 0.0 0.0 0.0 21 0.107000603066289 0.0 0.0 0.0 0.0 22 0.12087010034324437 0.0 0.0 0.0 0.0 23 0.1325307517575735 0.0 0.0 0.0 0.0 24 0.14388319212130365 0.0 0.0 0.0 0.0 25 0.15893416509222189 0.0 0.0 0.0 0.0 26 0.17855693531369207 0.0 0.0 0.0 0.0 27 0.1960222281809692 0.0 0.0 0.0 0.0 28 0.21251151938801613 0.0 0.0 0.0 0.0 29 0.23208292110105316 0.0 0.0 0.0 0.0 30 0.2578699123345035 0.0 0.0 0.0 0.0 31 0.28211584831495884 0.0 0.0 0.0 0.0 32 0.2996325096906691 0.0 0.0 0.0 0.0 33 0.31309105890015915 0.0 0.0 0.0 0.0 34 0.32778245231204517 0.0 0.0 0.0 0.0 35 0.3412923700299684 0.0 0.0 0.0 0.0 36 0.35665155405148563 0.0 0.0 0.0 0.0 37 0.37190800105613653 0.0 0.0 0.0 0.0 38 0.3886541348053493 0.0 0.0 0.0 0.0 39 0.40694132380755715 0.0 0.0 0.0 0.0 40 0.4264099885037278 0.0 0.0 0.0 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TACGGTT 75 0.0 46.000004 37 CGAATCG 75 0.0 46.000004 22 ATCGCCC 105 0.0 46.000004 40 GAGATAT 105 0.0 46.000004 13 AATCGAT 145 0.0 46.000004 24 CAGCGTT 25 3.4180364E-5 46.0 43 CGGGTAT 25 3.4180364E-5 46.0 42 ACTATAC 25 3.4180364E-5 46.0 27 GTACCAA 45 3.110472E-10 46.0 22 AAATCGC 65 0.0 46.0 26 ATTAGTA 40 5.6152203E-9 46.0 24 AATTTCG 20 6.3125393E-4 46.0 14 CTCAATA 60 0.0 46.0 16 GGTAATA 30 1.862074E-6 46.0 13 CGTATCT 20 6.3125393E-4 46.0 31 ATAGGTC 40 5.6152203E-9 46.0 24 CGTATAG 25 3.4180364E-5 46.0 36 GATAACG 25 3.4180364E-5 46.0 22 GTACACC 20 6.3125393E-4 46.0 27 AGATATC 80 0.0 46.0 20 >>END_MODULE