##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1527966_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 2036267 Sequences flagged as poor quality 0 Sequence length 52 %GC 57 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.79878522806685 31.0 31.0 34.0 30.0 34.0 2 32.363860927864565 34.0 31.0 34.0 30.0 34.0 3 32.50572591904696 34.0 31.0 34.0 31.0 34.0 4 36.05341981184196 37.0 35.0 37.0 35.0 37.0 5 36.02978391340625 37.0 35.0 37.0 35.0 37.0 6 35.98920131790183 37.0 35.0 37.0 35.0 37.0 7 35.72369242343956 37.0 35.0 37.0 33.0 37.0 8 35.74383614722431 37.0 35.0 37.0 33.0 37.0 9 37.72471193610661 39.0 38.0 39.0 35.0 39.0 10 37.94621432258147 39.0 38.0 39.0 35.0 39.0 11 38.1600669263903 39.0 39.0 39.0 37.0 39.0 12 38.17155215892611 39.0 39.0 39.0 37.0 39.0 13 38.15992794658068 39.0 39.0 39.0 37.0 39.0 14 38.810326445402296 40.0 39.0 40.0 36.0 40.0 15 38.166151590140196 40.0 38.0 40.0 34.0 40.0 16 37.58591972467265 40.0 37.0 40.0 33.0 40.0 17 37.56427767085554 40.0 37.0 40.0 33.0 40.0 18 37.595961629786274 40.0 37.0 40.0 33.0 40.0 19 37.760814274355965 40.0 37.0 40.0 33.0 40.0 20 37.78734664953073 40.0 37.0 40.0 33.0 40.0 21 37.635671058854264 40.0 37.0 40.0 33.0 40.0 22 37.69635268852267 40.0 37.0 40.0 33.0 40.0 23 37.59678126689673 40.0 37.0 40.0 33.0 40.0 24 37.59557366494669 40.0 37.0 40.0 33.0 40.0 25 37.704158148219264 40.0 37.0 40.0 33.0 40.0 26 37.67949880835863 40.0 37.0 40.0 33.0 40.0 27 37.624282080886246 40.0 37.0 40.0 33.0 40.0 28 37.595007923813526 40.0 37.0 40.0 33.0 40.0 29 37.58910692949402 40.0 37.0 40.0 33.0 40.0 30 37.56375367277474 40.0 37.0 40.0 33.0 40.0 31 37.50383962417502 40.0 37.0 40.0 33.0 40.0 32 37.42277265211291 40.0 36.0 40.0 33.0 40.0 33 37.35787939400874 40.0 36.0 40.0 33.0 40.0 34 37.251109505776995 40.0 36.0 40.0 33.0 40.0 35 37.1514600000884 40.0 35.0 40.0 33.0 40.0 36 37.0496693213611 39.0 35.0 40.0 32.0 40.0 37 36.91790762213403 39.0 35.0 40.0 32.0 40.0 38 36.72694297948157 39.0 35.0 40.0 32.0 40.0 39 36.572642978548494 39.0 35.0 40.0 31.0 40.0 40 36.44738632016332 39.0 35.0 40.0 31.0 40.0 41 36.22494348727353 38.0 35.0 40.0 31.0 40.0 42 36.06827591862953 38.0 35.0 40.0 30.0 40.0 43 35.868803550811364 38.0 35.0 40.0 30.0 40.0 44 35.69210815673976 38.0 35.0 40.0 30.0 40.0 45 35.51595836891724 37.0 35.0 40.0 30.0 40.0 46 35.34765971260154 37.0 35.0 40.0 29.0 40.0 47 35.140244378561356 37.0 34.0 40.0 29.0 40.0 48 34.9640867332231 36.0 34.0 40.0 28.0 40.0 49 34.797949875924914 36.0 34.0 40.0 28.0 40.0 50 34.62617574217919 35.0 34.0 39.0 27.0 40.0 51 34.43850634518951 35.0 34.0 39.0 27.0 40.0 52 33.809084466820906 35.0 33.0 38.0 26.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 1.0 13 5.0 14 5.0 15 10.0 16 35.0 17 118.0 18 289.0 19 612.0 20 1088.0 21 2057.0 22 2995.0 23 4377.0 24 6381.0 25 9152.0 26 12820.0 27 17295.0 28 22722.0 29 29946.0 30 37643.0 31 46190.0 32 56020.0 33 70643.0 34 101666.0 35 173386.0 36 186837.0 37 357962.0 38 604521.0 39 291491.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 32.0480565662558 22.433747637220463 34.04833452587505 11.46986127064869 2 26.94548406471253 21.190393990571962 34.44621947907617 17.41790246563933 3 19.076771366426897 22.33449739155032 36.460002543870715 22.12872869815206 4 20.364814633837312 24.680064058397058 32.884980211337705 22.070141096427925 5 0.0 100.0 0.0 0.0 6 100.0 0.0 0.0 0.0 7 100.0 0.0 0.0 0.0 8 0.0 100.0 0.0 0.0 9 0.0 0.0 0.0 100.0 10 0.0 0.0 100.0 0.0 11 99.50021288956704 0.37382131125240453 0.09104896361822885 0.03491683556233048 12 99.37252825881872 0.41281423310400844 0.11481794872676324 0.09983955935051739 13 98.00748133717238 1.0344419469548936 0.42391297408443984 0.5341637417882822 14 64.51870015081519 22.21324610181278 5.075365853299199 8.192687894072831 15 33.832547499910376 26.579176502884938 17.25981907087823 22.32845692632646 16 27.843008799926533 18.72426356661479 28.10353455612648 25.329193077332196 17 22.80108649798872 17.26748014872313 30.011535815293378 29.91989753799477 18 24.115010457862354 19.358954400380696 31.108346793421493 25.41768834833546 19 25.579946048332562 18.571729542343906 29.05046342154541 26.797860987778126 20 28.429768787688452 18.854600108924814 25.252926065196757 27.462705038189984 21 30.692782429809057 18.636112061925083 20.30097231846315 30.37013318980271 22 30.247113959024034 20.126584578544954 21.78884203299469 27.83745942943632 23 30.055488793954822 19.488947176377163 21.338360833819927 29.11720319584809 24 29.75818004220468 20.963901099413782 20.911206634493414 28.366712223888126 25 32.14450757194415 19.254940535794177 22.09715130677853 26.50340058548314 26 32.258736206990534 18.466340612503174 20.808469616214374 28.46645356429191 27 29.904771820198434 21.931848819432815 20.6736150023548 27.48976435801395 28 31.25926020507134 20.008328966682658 20.02812008444865 28.70429074379735 29 30.015661011056018 20.45222949642655 20.926970775443497 28.60513871707394 30 31.042147223325824 19.271343099898 20.638845495212564 29.047664181563615 31 31.07082715577083 19.074315892758662 20.390155122093518 29.464701829376992 32 32.01937663381079 20.806259689912963 19.317997099594503 27.85636657668174 33 30.780786606078674 21.805784801305524 19.815377845832593 27.59805074678321 34 30.120313298796276 21.997213528481286 20.737359098782232 27.145114073940206 35 31.779918841684317 22.91448027198791 19.21108577607946 26.094515110248313 36 32.41495344176378 23.32022274092739 19.13481876394402 25.13000505336481 37 31.785369993227803 22.33435006313023 19.040577684557082 26.839702259084884 38 30.89201956324981 23.723607955145372 20.998326840242463 24.386045641362355 39 30.91426615468404 23.86293153108114 22.246296777387247 22.976505536847576 40 31.30311496478605 23.680440728057764 20.17333679718819 24.843107509967997 41 31.37618986115279 24.655705759608146 19.163351367968936 24.804753011270133 42 33.613028153969985 22.85338808712217 17.716635392117045 25.816948366790797 43 32.114059698458014 23.868873777358274 18.553313489832128 25.463753034351583 44 31.665837535058028 24.949625957696117 18.59643160744637 24.78810489979949 45 29.44996898736757 22.508443146208233 20.52343823280542 27.518149633618773 46 30.249323885325452 20.63580070786395 21.195697813695354 27.919177593115247 47 30.143689408117897 20.953293453166996 22.484428613732874 26.418588524982233 48 28.91993044134193 21.02302890534493 23.379792532118824 26.677248121194324 49 29.9854586849367 20.63427831418964 22.0112588378636 27.369004163010057 50 30.25452948950211 21.903905529088277 20.948628053197346 26.892936928212265 51 28.997474299784855 22.029822218795474 21.614012307816214 27.35869117360346 52 29.419766661248254 22.11497804560993 21.602815347889052 26.86243994525276 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 1.0 6 2.0 7 1.0 8 0.0 9 8.5 10 17.0 11 80.5 12 144.0 13 247.0 14 473.5 15 597.0 16 872.5 17 1148.0 18 1304.5 19 1461.0 20 1737.5 21 2014.0 22 2438.0 23 2862.0 24 4065.0 25 5268.0 26 7503.5 27 9739.0 28 10951.0 29 12163.0 30 12855.5 31 13548.0 32 13784.5 33 14021.0 34 14724.0 35 15427.0 36 16219.0 37 17011.0 38 18900.0 39 21495.5 40 22202.0 41 25678.0 42 29154.0 43 37413.0 44 45672.0 45 45655.0 46 45638.0 47 55610.0 48 65582.0 49 71119.0 50 76656.0 51 89047.5 52 101439.0 53 112597.5 54 123756.0 55 134317.5 56 144879.0 57 162893.0 58 180907.0 59 188703.5 60 196500.0 61 197445.0 62 198390.0 63 187501.0 64 157025.5 65 137439.0 66 126173.0 67 114907.0 68 101374.0 69 87841.0 70 79133.0 71 70425.0 72 59799.5 73 49174.0 74 39244.0 75 29314.0 76 21720.0 77 14126.0 78 9676.0 79 5226.0 80 3960.0 81 2694.0 82 1901.0 83 1108.0 84 570.0 85 32.0 86 24.0 87 16.0 88 15.0 89 7.5 90 1.0 91 1.5 92 2.0 93 1.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 52 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 52 2036267.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 8.773796490520956 #Duplication Level Percentage of deduplicated Percentage of total 1 75.73245237876768 6.644611248993772 2 7.797885614895033 1.3683412288289976 3 3.6412606765033892 0.9584304043373219 4 2.245436636239885 0.7880401631491474 5 1.500735239797785 0.6583572790069465 6 0.9631489989144781 0.5070283983914773 7 0.6374357482875012 0.3914912071880234 8 0.5065899760271566 0.3555773883040129 9 0.3749245059827016 0.29605601833211975 >10 2.6836431335424753 4.705843137019669 >50 0.697541507511137 4.573059687829726 >100 2.93328036195717 60.81399183205677 >500 0.26481785826351706 15.031191301776428 >1k 0.020847363310106663 2.9079807047855892 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GCCAAGGACTGGGGACAGGATCTGGAGCTGGTGCTGATAACAGCGGAATCCC 3752 0.18425874406450626 No Hit GAACAGGACTGGGACACAGGATCTGGAGCTGGTGCTGATAACAGCGGAATCC 3701 0.1817541609229045 No Hit ACAAAGGACTGGGGGACACAGGATCTGGAGCTGTGCTGATAACAGCGGAATC 3636 0.17856204515419638 No Hit GGGCAGGACTGGGGAAGGAAAGAAAGAAAGAAAGAAAGGAAGTGAAAGAAAG 3272 0.16068619684943083 No Hit GCTCAGGACTGGGACACAGGATCTGGAGCTGGTGCTGATAACAGCGGAATCC 2672 0.13122051283058656 No Hit CCTGAGGACTGGGACACAGGATCTGGAGCTGGTGCTGATAACAGCGGAATCC 2282 0.11206781821833778 No Hit TAATAGGACTGGGGATGTGGATTGTCTCAAAGCCTGCCAGGAGCAAATCGAA 2273 0.11162583295805512 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 0.0 0.0 10 0.0 0.0 0.0 0.0 0.0 11 0.0027010210350607265 0.0 0.0 0.0 0.0 12 0.0071699831112521095 0.0 0.0 0.0 0.0 13 0.009821894672948096 0.0 0.0 0.0 0.0 14 0.04262702288059474 0.0 0.0 0.0 0.0 15 0.0721909258461685 0.0 0.0 0.0 0.0 16 0.08928102257709819 0.0 0.0 0.0 0.0 17 0.10273701827903708 0.0 0.0 0.0 0.0 18 0.12051464763707313 0.0 0.0 0.0 0.0 19 0.13750652542127334 0.0 0.0 0.0 0.0 20 0.1562663442466042 0.0 0.0 0.0 0.0 21 0.17478061570511136 0.0 0.0 0.0 0.0 22 0.19633967451223244 0.0 0.0 0.0 0.0 23 0.21627812069831706 0.0 0.0 0.0 0.0 24 0.23808272687226184 0.0 0.0 0.0 0.0 25 0.2621463688209847 0.0 0.0 0.0 0.0 26 0.2929871180940417 0.0 0.0 0.0 0.0 27 0.3223054736927918 0.0 0.0 0.0 0.0 28 0.35324444191257826 0.0 0.0 0.0 0.0 29 0.3871790880076139 0.0 0.0 0.0 0.0 30 0.4327526792900931 0.0 0.0 0.0 0.0 31 0.4754779211174173 0.0 0.0 0.0 0.0 32 0.5138324198152796 0.0 0.0 0.0 0.0 33 0.5419721480532759 0.0 0.0 0.0 0.0 34 0.5711431752319318 0.0 0.0 0.0 0.0 35 0.5951085982339251 0.0 0.0 0.0 0.0 36 0.6202526485966723 0.0 0.0 0.0 0.0 37 0.6435305389715592 0.0 0.0 0.0 0.0 38 0.669313012488048 0.0 0.0 0.0 0.0 39 0.6967652080989379 0.0 0.0 0.0 0.0 40 0.7279006142121833 0.0 0.0 0.0 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCGTTAA 75 0.0 46.000004 45 ACAGTCG 35 1.02008926E-7 46.000004 30 CGAACAA 35 1.02008926E-7 46.000004 29 CGTATAG 70 0.0 46.000004 25 CCGATCA 35 1.02008926E-7 46.000004 37 CTATATG 35 1.02008926E-7 46.000004 15 ATAATCG 70 0.0 46.000004 42 CACGATT 35 1.02008926E-7 46.000004 24 TAAGTCG 35 1.02008926E-7 46.000004 28 TAAGTCC 35 1.02008926E-7 46.000004 22 ATGTAAT 70 0.0 46.000004 25 ACGATTG 35 1.02008926E-7 46.000004 25 ACGATAT 35 1.02008926E-7 46.000004 45 ATCCCGT 35 1.02008926E-7 46.000004 40 CGAATAA 75 0.0 46.000004 15 TCGTACC 35 1.02008926E-7 46.000004 45 CGTAATC 75 0.0 46.000004 28 TATAGAC 35 1.02008926E-7 46.000004 22 CAATGCG 35 1.02008926E-7 46.000004 42 CGCGTAT 70 0.0 46.000004 23 >>END_MODULE