##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1527962_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 778416 Sequences flagged as poor quality 0 Sequence length 52 %GC 39 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.566983463854804 31.0 31.0 33.0 28.0 34.0 2 31.5378203942365 31.0 31.0 34.0 28.0 34.0 3 31.998663953464472 33.0 31.0 34.0 30.0 34.0 4 35.75727246099772 37.0 35.0 37.0 35.0 37.0 5 35.773305019424065 37.0 35.0 37.0 35.0 37.0 6 36.03583430967503 37.0 35.0 37.0 35.0 37.0 7 35.8123856652484 37.0 35.0 37.0 33.0 37.0 8 35.788091457524 37.0 35.0 37.0 33.0 37.0 9 36.38931239851185 37.0 35.0 39.0 32.0 39.0 10 37.42709939158496 39.0 37.0 39.0 35.0 39.0 11 37.94100326817537 39.0 37.0 39.0 35.0 39.0 12 38.19038534665269 39.0 39.0 39.0 37.0 39.0 13 38.11288308565086 39.0 39.0 39.0 37.0 39.0 14 38.56227646913732 40.0 39.0 40.0 36.0 40.0 15 37.696108507533246 40.0 37.0 40.0 33.0 40.0 16 37.2773915232986 39.0 36.0 40.0 33.0 40.0 17 37.28490293108055 39.0 36.0 40.0 33.0 40.0 18 37.129003000966065 39.0 36.0 40.0 32.0 40.0 19 37.385356929970605 39.0 37.0 40.0 32.0 40.0 20 37.29936049618713 39.0 36.0 40.0 32.0 40.0 21 37.46677483504964 39.0 37.0 40.0 33.0 40.0 22 37.465993761690406 40.0 37.0 40.0 33.0 40.0 23 37.20817275081704 39.0 36.0 40.0 32.0 40.0 24 37.453380968530965 40.0 37.0 40.0 33.0 40.0 25 37.52372381862654 40.0 37.0 40.0 33.0 40.0 26 37.44404919734435 40.0 37.0 40.0 33.0 40.0 27 37.30830558467452 40.0 37.0 40.0 32.0 40.0 28 36.90709723335594 39.0 36.0 40.0 31.0 40.0 29 36.8530875521572 39.0 35.0 40.0 32.0 40.0 30 36.77325620233911 39.0 35.0 40.0 31.0 40.0 31 36.71240056730591 39.0 35.0 40.0 31.0 40.0 32 36.57689333210006 39.0 35.0 40.0 31.0 40.0 33 36.46177622248258 39.0 35.0 40.0 31.0 40.0 34 36.31558318431276 39.0 35.0 40.0 30.0 40.0 35 36.047808626749706 39.0 35.0 40.0 30.0 40.0 36 35.351589638445255 38.0 35.0 40.0 26.0 40.0 37 35.369536340465764 38.0 35.0 40.0 27.0 40.0 38 35.20288123574027 38.0 35.0 40.0 26.0 40.0 39 34.924983556350334 38.0 35.0 40.0 24.0 40.0 40 34.50167262748967 37.0 34.0 40.0 23.0 40.0 41 34.049725339664136 37.0 33.0 40.0 21.0 40.0 42 33.38126143347516 36.0 33.0 40.0 17.0 40.0 43 32.86292804875542 35.0 33.0 40.0 15.0 40.0 44 32.41929508129329 35.0 32.0 40.0 11.0 40.0 45 31.683969753961893 35.0 31.0 40.0 10.0 40.0 46 31.468644015539248 35.0 30.0 39.0 10.0 40.0 47 31.17221382910937 35.0 29.0 39.0 9.0 40.0 48 30.78906522990278 35.0 27.0 39.0 9.0 40.0 49 30.415969096215907 35.0 26.0 39.0 8.0 40.0 50 29.90371215391256 35.0 24.0 39.0 8.0 40.0 51 29.52386384658075 35.0 23.0 39.0 8.0 40.0 52 28.814402581653 35.0 20.0 38.0 8.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 14 5.0 15 18.0 16 52.0 17 177.0 18 388.0 19 731.0 20 1326.0 21 2117.0 22 3138.0 23 4533.0 24 6425.0 25 8676.0 26 11707.0 27 15439.0 28 19681.0 29 24886.0 30 30064.0 31 32329.0 32 32163.0 33 35241.0 34 44584.0 35 60107.0 36 75369.0 37 133795.0 38 177433.0 39 58032.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.94378841133789 16.23039608641138 36.3439343487287 6.481881153522025 2 32.54249655711085 17.25504100635136 31.79829294361884 18.404169492918953 3 19.442303344227252 25.145295060738732 34.35887751536453 21.053524079669483 4 17.644293025837086 28.879930525580157 34.81506032763972 18.660716120943043 5 0.0 100.0 0.0 0.0 6 0.0 100.0 0.0 0.0 7 0.0 100.0 0.0 0.0 8 100.0 0.0 0.0 0.0 9 0.0 0.0 100.0 0.0 10 0.0 0.0 100.0 0.0 11 98.393789439066 0.5607541468829007 0.9634950977369426 0.08196131631415593 12 98.74437318862923 0.8684302480935644 0.2221177365316232 0.16507882674559618 13 96.39344515015108 2.0748545764732484 0.6264002795420444 0.9052999938336314 14 46.12199646461532 37.504624776469136 8.613646173768268 7.759732585147273 15 28.2689461676019 39.94881914040821 19.851981459784998 11.930253232204887 16 41.79230642741156 25.11189389735052 18.514136400073998 14.581663275163923 17 25.790579844196422 25.971716922570963 20.317156892972395 27.920546340260223 18 18.995370084890343 42.68732914020267 22.695448192226266 15.621852582680726 19 28.544377299541633 35.38313703726542 23.765184682740333 12.307300980452611 20 20.74032393989846 33.7170613142587 30.443104972148564 15.099509773694272 21 28.305687447328935 36.97611559885717 15.948413187807034 18.769783766006864 22 26.630362171383936 41.1650068857783 17.431167910217674 14.773463032620091 23 16.959954574417793 40.23953772789871 26.182015785903683 16.61849191177982 24 19.066540256109842 46.5810055291772 15.610419107520915 18.74203510719204 25 21.691871698423466 37.41803868368584 23.632350825265668 17.257738792625023 26 18.670736469959508 38.48841750426507 16.549248730755792 26.29159729501963 27 20.08835892376313 48.88748432714641 15.667714949333003 15.356441799757455 28 19.862001808801462 48.40316745801731 14.583847197385461 17.15098353579577 29 22.39843477009722 42.803205483957164 14.034141127623275 20.764218618322335 30 28.402679287167786 43.2282995210787 13.206177673634665 15.162843518118846 31 20.09246983618014 44.71221043760663 14.66375305749111 20.531566668722125 32 19.426887422663462 52.82817927689051 15.89548519043802 11.849448110008016 33 22.6484296314567 51.73416270991347 13.631400176769235 11.986007481860598 34 19.502553904339067 55.04678732194611 12.211850732770138 13.238808040944688 35 21.202930052825224 52.345403999917785 13.483535795769871 12.968130151487124 36 19.957195124457876 49.99910073790878 17.22279603708043 12.82090810055292 37 19.538781320013975 51.41274074530842 15.915525888470947 13.132952046206656 38 18.25052414133317 52.486459682226474 16.957899118209284 12.305117058231074 39 18.96787835810158 50.795975416743744 18.235493617808473 12.0006526073462 40 20.170962570142443 51.0231033277836 15.863754085219215 12.94218001685474 41 19.32758319459004 54.54769686131837 13.59478736305523 12.529932581036359 42 20.70872130069269 51.76692154323652 14.110706871390105 13.413650284680683 43 21.85951984542969 50.336580954142775 14.259470514480688 13.544428685946846 44 23.889411317341885 47.365290538735074 16.379930525580153 12.36536761834289 45 21.732210026515386 44.8840979630429 19.248062732523483 14.135629277918236 46 22.38854288709379 45.68713901050338 17.104735771104394 14.819582331298431 47 24.847253910505437 45.05932560481799 14.69214404637109 15.40127643830548 48 25.33735175022096 44.69987770035559 15.035405233191506 14.927365316231938 49 23.592397895212844 45.85658568169205 15.030523524696306 15.5204928983988 50 21.617489876878174 47.78974224579146 15.412581447452261 15.180186429878113 51 21.84538858399622 46.998520071529875 15.87159051201414 15.284500832459763 52 23.486927298513905 44.97800661856899 14.987230478304658 16.547835604612445 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 1.0 2 2.0 3 53.0 4 104.0 5 84.5 6 65.0 7 114.0 8 163.0 9 427.0 10 691.0 11 1090.0 12 1489.0 13 1767.5 14 2396.0 15 2746.0 16 3573.5 17 4401.0 18 6480.0 19 8559.0 20 12811.5 21 17064.0 22 24638.5 23 32213.0 24 39800.0 25 47387.0 26 49271.0 27 51155.0 28 47315.0 29 43475.0 30 38927.5 31 34380.0 32 32914.0 33 31448.0 34 31466.0 35 31484.0 36 30679.0 37 29874.0 38 30806.0 39 34945.0 40 38152.0 41 40772.0 42 43392.0 43 44895.5 44 46399.0 45 47719.5 46 49040.0 47 47716.5 48 46393.0 49 44001.0 50 41609.0 51 35036.0 52 28463.0 53 26708.0 54 24953.0 55 22282.0 56 19611.0 57 21710.0 58 23809.0 59 18852.0 60 13895.0 61 14573.5 62 15252.0 63 10571.0 64 5112.5 65 4335.0 66 3552.5 67 2770.0 68 2515.0 69 2260.0 70 1500.5 71 741.0 72 505.5 73 270.0 74 381.5 75 493.0 76 329.0 77 165.0 78 98.5 79 32.0 80 19.0 81 6.0 82 4.0 83 2.0 84 1.0 85 0.0 86 0.0 87 0.0 88 0.0 89 0.0 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 52 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 52 778416.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 42.54801459634612 #Duplication Level Percentage of deduplicated Percentage of total 1 82.17186076728863 34.96249531335518 2 6.969005699502993 5.930347124489454 3 2.8468045140869056 3.6337764005494115 4 1.7070100804664046 2.905195592791782 5 1.1586861650332438 2.464989793120939 6 0.7904868586063457 2.0180187838921557 7 0.6266494710486159 1.8663883588678358 8 0.4933116335761918 1.6791544468757726 9 0.39453460862565093 1.510799785791111 >10 2.547459805214439 18.83429534159192 >50 0.11420049969856565 3.426522362953851 >100 0.16074959753335796 14.887301526133633 >500 0.01675768005173947 4.580403458461798 >1k 0.002482619266924366 1.3003117111251594 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GTATAAAGTTTGGGCCGAGGCAGGCAGATCATGAGGTCGGGAGATCGAGACC 1693 0.2174929600624859 No Hit TTCCAAAGTTGGGTGGTATCAAGCAGAGTAGAAAAAGTTGGGACACAGGATC 1563 0.20079237836837885 No Hit GCATAAAGTTGGGGTTTGAGACCAGCCTGGCCAACGTGGAGAAACCCCATCT 1268 0.1628949045240591 No Hit GAAAAAAGTTGGGGTTTTGCAGCAGCAGTCGCTTCACGTTCGCTCGCGTATC 1110 0.14259727446506754 No Hit TTGCAAAGTTGGGAGCCACCACCGTGCCATGGAGCCAGGCAGAGGCTGAGCG 1110 0.14259727446506754 No Hit GCGCAAAGTTGGGGCTTTTCCTCAGCTGCCGTGCCGGCAGTCTACAGCATGG 1041 0.13373311956588765 No Hit ATTTAAAGTTGGGATTACTGCTTGGGCTCCAAGGGCTGGAAGTGGTGATGGG 1036 0.1330907895007297 No Hit TAAAAAAGTTGGGCTCGTGGATGAAGTTTCCTTTGGCATGTGGAAACTCGTT 1027 0.13193459538344535 No Hit GCACAAAGTTGGGGGCCACTTGGAGCAGCTCTGCCGCGGGGACTGCACTGTC 887 0.11394935355902241 No Hit CCTTAAAGTTGGGGGCGCCGGCGGCTTTGGTGACTCTAGATAACCTCGGGCC 863 0.1108661692462642 No Hit GCCCAAAGTTGGGCAGCCAGCCCGTGCACCTACGACGCCTGCAGGAGCAGAA 848 0.10893917905079031 No Hit CTGCAAAGTTGGGCTAGCACGATGAAGATTAAGATCATTGCTCTCCCTGAGC 843 0.10829684898563235 No Hit GACGAAAGTTGGGTATATCCAGAATCTACAAGGAACTCAAACAAATTTACAA 825 0.1059844607510637 No Hit GTGGAAAGTTGGCCTGTGGCGCAGACCAGGCGAAAGTCGTATTGCAACAGCC 810 0.10405747055558981 No Hit CGCCAAAGTTGGGGCTTTTCAGCCAAGATGGCGCCGAAAGCGAAGAAGGAAG 800 0.10277281042527389 No Hit CTGCAAAGTTGGGCAACCTGGCCTCCAGGATCCTCAGCCTATGTGCTTTCTT 789 0.10135968428192636 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 0.0 0.0 10 0.0 0.0 0.0 0.0 0.0 11 0.011561941172843312 0.0 0.0 0.0 0.0 12 0.03481428953156153 0.0 0.0 0.0 0.0 13 0.08889848101786191 0.0 0.0 0.0 0.0 14 0.35572239008447926 0.0 0.0 0.0 0.0 15 0.6618568991387639 0.0 0.0 0.0 0.0 16 0.8155022507245483 0.0 0.0 0.0 0.0 17 0.9196881872931697 0.0 0.0 0.0 0.0 18 1.0974851493288935 0.0 0.0 0.0 0.0 19 1.2439364041849088 0.0 0.0 0.0 0.0 20 1.382551232245997 0.0 0.0 0.0 0.0 21 1.5386374380793817 0.0 0.0 0.0 0.0 22 1.67159976156708 0.0 0.0 0.0 0.0 23 1.8105999876672627 0.0 0.0 0.0 0.0 24 2.0009866189800825 0.0 0.0 0.0 0.0 25 2.1805821051982486 0.0 0.0 0.0 0.0 26 2.410793200550862 0.0 0.0 0.0 0.0 27 2.699199399806787 0.0 0.0 0.0 0.0 28 2.979769172267785 0.0 0.0 0.0 0.0 29 3.263293663028509 0.0 0.0 0.0 0.0 30 3.583816365542332 0.0 0.0 0.0 0.0 31 3.897144971326386 0.0 0.0 0.0 0.0 32 4.280487554212658 0.0 0.0 0.0 0.0 33 4.576730180263509 0.0 0.0 0.0 0.0 34 4.805656615485807 0.0 0.0 0.0 0.0 35 5.016083944831555 0.0 0.0 0.0 0.0 36 5.2391009434544 0.0 0.0 0.0 0.0 37 5.467128116585476 0.0 0.0 0.0 0.0 38 5.686034202791309 0.0 0.0 0.0 0.0 39 5.930119627551335 0.0 0.0 0.0 0.0 40 6.191034100018499 0.0 0.0 0.0 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTTGTAC 20 6.310192E-4 46.000004 25 CTTAAGT 20 6.310192E-4 46.000004 34 ATTTACA 80 0.0 46.000004 45 ATCCTGT 35 1.01899786E-7 46.000004 25 AGGTAGA 75 0.0 46.000004 33 GACAGGC 35 1.01899786E-7 46.000004 29 CAGCGAA 20 6.310192E-4 46.000004 35 AGCAACT 20 6.310192E-4 46.000004 19 ACAGTTA 70 0.0 46.000004 41 GACAGAC 40 5.6079443E-9 46.000004 23 CGGCGAG 70 0.0 46.000004 19 ACCGGCT 20 6.310192E-4 46.000004 41 ACTGCAA 35 1.01899786E-7 46.000004 26 GATGTCA 20 6.310192E-4 46.000004 40 TACTTAT 20 6.310192E-4 46.000004 23 ATCTAAT 40 5.6079443E-9 46.000004 44 GTACAAT 70 0.0 46.000004 31 TTTACCG 35 1.01899786E-7 46.000004 15 ACCATTG 75 0.0 46.000004 15 TCTCTAC 20 6.310192E-4 46.000004 36 >>END_MODULE