##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1527960_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 8166956 Sequences flagged as poor quality 0 Sequence length 52 %GC 53 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.400707191271753 31.0 31.0 33.0 30.0 34.0 2 32.15288364477536 33.0 31.0 34.0 30.0 34.0 3 32.37975115820387 34.0 31.0 34.0 30.0 34.0 4 35.96733274919076 37.0 35.0 37.0 35.0 37.0 5 35.569807649263694 37.0 35.0 37.0 33.0 37.0 6 35.90783077562803 37.0 35.0 37.0 35.0 37.0 7 36.26500828460445 37.0 36.0 37.0 35.0 37.0 8 36.1361715429837 37.0 36.0 37.0 35.0 37.0 9 37.18567419733864 39.0 37.0 39.0 34.0 39.0 10 37.52195432423047 39.0 37.0 39.0 35.0 39.0 11 38.0100296854789 39.0 37.0 39.0 35.0 39.0 12 38.11338226874248 39.0 39.0 39.0 37.0 39.0 13 38.11841217217284 39.0 39.0 39.0 37.0 39.0 14 38.76040424363741 40.0 39.0 40.0 36.0 40.0 15 38.18991641438989 40.0 38.0 40.0 34.0 40.0 16 37.72848659892376 40.0 37.0 40.0 33.0 40.0 17 37.708999166886656 40.0 37.0 40.0 33.0 40.0 18 37.70001356686628 40.0 37.0 40.0 33.0 40.0 19 37.843541339025215 40.0 37.0 40.0 33.0 40.0 20 37.87710696616953 40.0 37.0 40.0 33.0 40.0 21 37.680265939965885 40.0 37.0 40.0 33.0 40.0 22 37.73164420134013 40.0 37.0 40.0 33.0 40.0 23 37.66900054316443 40.0 37.0 40.0 33.0 40.0 24 37.64759758715487 40.0 37.0 40.0 33.0 40.0 25 37.76283489221688 40.0 37.0 40.0 33.0 40.0 26 37.750684832880204 40.0 37.0 40.0 33.0 40.0 27 37.74447260399101 40.0 37.0 40.0 33.0 40.0 28 37.69571404572279 40.0 37.0 40.0 33.0 40.0 29 37.68140369557519 40.0 37.0 40.0 33.0 40.0 30 37.619739349642636 40.0 37.0 40.0 33.0 40.0 31 37.57681393165336 40.0 37.0 40.0 33.0 40.0 32 37.518140908313946 40.0 36.0 40.0 33.0 40.0 33 37.44523075672258 40.0 36.0 40.0 33.0 40.0 34 37.34167479290938 40.0 36.0 40.0 33.0 40.0 35 37.242149584251464 40.0 36.0 40.0 33.0 40.0 36 37.15790191596477 40.0 35.0 40.0 33.0 40.0 37 37.04156689469124 40.0 35.0 40.0 32.0 40.0 38 36.84352713544679 39.0 35.0 40.0 32.0 40.0 39 36.72632532855571 39.0 35.0 40.0 32.0 40.0 40 36.57620072888846 39.0 35.0 40.0 31.0 40.0 41 36.40164940278851 39.0 35.0 40.0 31.0 40.0 42 36.22451008674468 39.0 35.0 40.0 31.0 40.0 43 36.03960875998352 38.0 35.0 40.0 30.0 40.0 44 35.82648124956226 38.0 35.0 40.0 30.0 40.0 45 35.628063258820056 38.0 35.0 40.0 30.0 40.0 46 35.46714614355704 38.0 35.0 40.0 29.0 40.0 47 35.31630561007063 37.0 35.0 40.0 29.0 40.0 48 35.14751750835929 37.0 34.0 40.0 28.0 40.0 49 34.99013034966761 37.0 34.0 40.0 28.0 40.0 50 34.819882952718245 36.0 34.0 40.0 28.0 40.0 51 34.63236963686348 36.0 34.0 40.0 27.0 40.0 52 33.99262822035529 35.0 33.0 39.0 26.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 2.0 13 2.0 14 9.0 15 35.0 16 115.0 17 410.0 18 1043.0 19 2142.0 20 4054.0 21 7082.0 22 11226.0 23 17273.0 24 25420.0 25 35872.0 26 50534.0 27 67904.0 28 90234.0 29 117885.0 30 150284.0 31 183456.0 32 219461.0 33 274513.0 34 399056.0 35 686940.0 36 712465.0 37 1347400.0 38 2647966.0 39 1114173.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 26.764806863169095 20.047506072029776 35.49644445249858 17.691242612302553 2 27.356887927399143 20.526974799423435 34.671669591461004 17.444467681716418 3 27.80599038368763 20.722984181621648 35.07993675979153 16.39108867489919 4 25.965524976502873 21.28644993312074 36.87366504729547 15.874360043080923 5 0.0 0.0 100.0 0.0 6 0.0 100.0 0.0 0.0 7 0.0 0.0 100.0 0.0 8 100.0 0.0 0.0 0.0 9 0.0 0.0 100.0 0.0 10 0.0 100.0 0.0 0.0 11 99.54684462607611 0.36955017267143353 0.06882613301700169 0.014779068235460066 12 98.91795670259519 0.9422360056794723 0.08097264145906995 0.058834650266268114 13 98.25523732465315 1.1042057775259229 0.25549298906471396 0.3850639087562122 14 63.63674544101866 22.86141862402589 4.788344641504129 8.713491293451318 15 31.955161751820384 25.144876499885637 17.524019965333473 25.375941782960503 16 28.046190037022363 17.80956086943532 28.9401583650016 25.204090728540717 17 22.7759032863652 17.424937761388698 30.48196904697417 29.317189905271928 18 23.137751691082943 19.346326832175905 32.46552326227789 25.05039821446326 19 24.839952609025932 18.72675694591718 29.581070352283028 26.852220092773855 20 28.15746772726583 18.84724247320544 25.83408065379561 27.161209145733125 21 31.120640297315184 19.731500941109516 21.12619438625603 28.021664375319272 22 29.64535378909841 21.198693858519626 22.814938638092332 26.341013714289634 23 29.15662824680334 21.469100604925508 21.929480212701037 27.44479093557012 24 28.225559192433508 22.89071962674955 22.47330584369501 26.410415337121933 25 31.343342611371973 20.335238735215423 23.0021932284195 25.319225424993107 26 29.788295663647506 20.348266845076672 22.586787537486426 27.276649953789395 27 31.373121148197686 22.511496327395424 20.197549735788954 25.91783278861794 28 31.25412944553638 21.48121037997511 19.743231137770305 27.52142903671821 29 30.570998545847438 20.996635711028684 19.443841744708802 28.98852399841508 30 30.09899894158852 20.76615816223327 20.00498104801838 29.129861848159827 31 29.25978785731183 20.37611075656585 20.9470946090563 29.417006777066018 32 29.636280641159324 22.781009227917966 19.21844564853784 28.364264482384872 33 31.300131897367883 22.176683699532603 20.336903982340544 26.186280420758973 34 29.58178053120404 22.705938418181756 20.619322548082785 27.092958502531424 35 30.84811525861043 22.683592271098313 20.01860913662324 26.449683333668016 36 33.415583480552606 21.914223610363518 20.303268439305906 24.366924469777967 37 33.161449627009134 21.937108513869795 20.53199502972711 24.36944682939396 38 30.817957143395898 24.590483896325633 22.12376312545335 22.467795834825115 39 31.502655334496723 24.69713317911839 22.325013138310037 21.475198348074855 40 31.858712107669003 25.33991856941558 20.06060764867596 22.740761674239458 41 31.385928857704144 25.200294944652573 19.020073084757648 24.393703112885635 42 31.81088523067836 25.895364196892945 18.485859358125598 23.8078912143031 43 32.700482284954155 23.16040394977027 19.076177219517284 25.062936545758298 44 31.090384226387407 24.123835122902584 19.721007435328413 25.064773215381592 45 28.207400652091184 23.8958432003307 20.541153888915282 27.355602258662838 46 28.562649290629217 22.93581598823356 21.04178105036932 27.45975367076791 47 29.44366297553213 20.770333524510235 22.837150096070065 26.94885340388757 48 29.734052687439483 20.558345116589336 22.18684660478151 27.520755591189666 49 29.85500350436564 20.011654280983024 22.340269740647557 27.79307247400378 50 29.797883079081117 21.868539514600055 20.958763583396312 27.374813822922516 51 28.575395777814894 22.574702251365135 22.43329093483545 26.416611035984523 52 29.351094826517983 22.16606774910995 22.52828348775235 25.954553936619718 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 1.0 2 2.0 3 5.0 4 8.0 5 30.0 6 52.0 7 383.5 8 715.0 9 1347.5 10 1980.0 11 2860.5 12 3741.0 13 4405.5 14 6104.0 15 7138.0 16 8577.0 17 10016.0 18 12502.0 19 14988.0 20 19211.5 21 23435.0 22 29752.5 23 36070.0 24 43097.5 25 50125.0 26 55097.0 27 60069.0 28 64179.0 29 68289.0 30 69974.5 31 71660.0 32 78300.5 33 84941.0 34 89613.5 35 94286.0 36 103685.5 37 113085.0 38 128804.5 39 162818.0 40 181112.0 41 209498.0 42 237884.0 43 272848.5 44 307813.0 45 328009.0 46 348205.0 47 378280.0 48 408355.0 49 439973.5 50 471592.0 51 518821.5 52 566051.0 53 615882.0 54 665713.0 55 716687.0 56 767661.0 57 784045.0 58 800429.0 59 760561.5 60 720694.0 61 638954.5 62 557215.0 63 487683.0 64 368060.5 65 317970.0 66 274082.5 67 230195.0 68 202153.5 69 174112.0 70 138801.5 71 103491.0 72 80574.0 73 57657.0 74 43263.0 75 28869.0 76 19066.5 77 9264.0 78 6235.0 79 3206.0 80 1968.0 81 730.0 82 459.5 83 189.0 84 153.0 85 117.0 86 102.0 87 87.0 88 43.5 89 0.0 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 52 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 52 8166956.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 8.578106330509115 #Duplication Level Percentage of deduplicated Percentage of total 1 74.14699832771144 6.360408357431903 2 7.7993599799364866 1.3380747843562524 3 3.695561398953626 0.9510275589344765 4 2.328604700291036 0.7990007488327927 5 1.572901202693893 0.6746256882046943 6 1.084035695434447 0.5579384076902448 7 0.7478727064937563 0.4490732118592354 8 0.5373980867657586 0.3687886344071073 9 0.40058383348634313 0.30926256461359286 >10 2.7439381934111977 4.969921767818289 >50 1.150051874347443 7.423499066351848 >100 3.597925283894341 64.68307556631812 >500 0.18415818202019285 9.975368090279863 >1k 0.010610534559963693 1.1399355529016073 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 0.0 0.0 10 0.025186862767474196 0.0 0.0 0.0 0.0 11 0.025835819367705667 0.0 0.0 0.0 0.0 12 0.031211139131887083 0.0 0.0 0.0 0.0 13 0.03972104171982805 0.0 0.0 0.0 0.0 14 0.060659075425409416 0.0 0.0 0.0 0.0 15 0.09299670525958509 0.0 0.0 0.0 0.0 16 0.11355516057635183 0.0 0.0 0.0 0.0 17 0.131334122529863 0.0 0.0 0.0 0.0 18 0.15637405172747348 0.0 0.0 0.0 0.0 19 0.18176907038558798 0.0 0.0 0.0 0.0 20 0.2051559969222315 0.0 0.0 0.0 0.0 21 0.22599607491457038 0.0 0.0 0.0 0.0 22 0.2493952459153692 0.0 0.0 0.0 0.0 23 0.27502290939243457 0.0 0.0 0.0 0.0 24 0.2997689714503176 0.0 0.0 0.0 0.0 25 0.32866590685685093 0.0 0.0 0.0 0.0 26 0.3622892054273342 0.0 0.0 0.0 0.0 27 0.39647574934896185 0.0 0.0 0.0 0.0 28 0.4318377618294993 0.0 0.0 0.0 0.0 29 0.4696976449977201 0.0 0.0 0.0 0.0 30 0.5121124688317165 0.0 0.0 0.0 0.0 31 0.5507192643134112 0.0 0.0 0.0 0.0 32 0.5856772094768234 0.0 0.0 0.0 0.0 33 0.6172556825333698 0.0 0.0 0.0 0.0 34 0.6471199306081727 0.0 0.0 0.0 0.0 35 0.6742903965688073 0.0 0.0 0.0 0.0 36 0.7008853727141422 0.0 0.0 0.0 0.0 37 0.7256926570928017 0.0 0.0 0.0 0.0 38 0.751589698781284 0.0 0.0 0.0 0.0 39 0.7792009654515097 0.0 0.0 0.0 0.0 40 0.8107427051155902 0.0 0.0 0.0 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGATTAG 45 3.110472E-10 46.0 44 TAACGCG 65 0.0 46.0 38 ATTAGCG 105 0.0 43.809525 19 TAGGGGC 158725 0.0 43.761223 9 ACGTTAT 2000 0.0 43.585 1 CGTTATG 14845 0.0 43.52105 2 TAGGGAT 40765 0.0 43.511833 9 CCGTTAT 2740 0.0 43.481754 1 ACGATAT 1245 0.0 43.413654 1 CTTTATG 21730 0.0 43.311554 2 CGGTATG 12035 0.0 43.305363 2 CATATGT 39165 0.0 43.292736 3 TCGTTAT 5490 0.0 43.234974 1 TAGGGCT 32300 0.0 43.187305 9 TCTTATG 21130 0.0 43.06105 2 TTTATGT 119370 0.0 43.026974 3 CTTATGT 53750 0.0 43.008926 3 TTATGTA 322140 0.0 42.969177 4 CGTATGT 36885 0.0 42.963264 3 ATATGTA 186335 0.0 42.95119 4 >>END_MODULE