##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1527954_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 14340460 Sequences flagged as poor quality 0 Sequence length 52 %GC 57 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.405707557498154 31.0 31.0 33.0 30.0 34.0 2 32.13128623489065 33.0 31.0 34.0 30.0 34.0 3 32.36875964927206 34.0 31.0 34.0 30.0 34.0 4 35.995136766881956 37.0 35.0 37.0 35.0 37.0 5 36.10803649255324 37.0 35.0 37.0 35.0 37.0 6 36.07899900003208 37.0 35.0 37.0 35.0 37.0 7 34.432698393217514 35.0 35.0 35.0 32.0 37.0 8 35.398015335630795 35.0 35.0 37.0 33.0 37.0 9 37.9757422704711 39.0 38.0 39.0 35.0 39.0 10 38.13908291644759 39.0 39.0 39.0 35.0 39.0 11 37.700747744493555 39.0 37.0 39.0 35.0 39.0 12 38.02754890707829 39.0 38.0 39.0 37.0 39.0 13 38.13006598114705 39.0 39.0 39.0 37.0 39.0 14 38.820320408131956 40.0 39.0 40.0 36.0 40.0 15 38.2189716368931 40.0 38.0 40.0 34.0 40.0 16 37.35096168463215 39.0 36.0 40.0 33.0 40.0 17 37.32629155550101 40.0 36.0 40.0 33.0 40.0 18 37.34915023646382 40.0 36.0 40.0 33.0 40.0 19 37.46566839557448 40.0 36.0 40.0 33.0 40.0 20 37.48428530186619 40.0 36.0 40.0 33.0 40.0 21 37.22001037623619 40.0 36.0 40.0 32.0 40.0 22 37.27146067838828 40.0 36.0 40.0 32.0 40.0 23 37.22428213599843 40.0 36.0 40.0 32.0 40.0 24 37.1682114102337 40.0 35.0 40.0 32.0 40.0 25 37.37685262536906 40.0 36.0 40.0 33.0 40.0 26 37.408435015334234 40.0 36.0 40.0 33.0 40.0 27 37.40394743264861 40.0 36.0 40.0 33.0 40.0 28 37.399837173981865 40.0 36.0 40.0 33.0 40.0 29 37.40845447077709 40.0 35.0 40.0 33.0 40.0 30 37.37093454463804 40.0 35.0 40.0 33.0 40.0 31 37.33168817457739 40.0 35.0 40.0 33.0 40.0 32 37.2493705222845 40.0 35.0 40.0 33.0 40.0 33 37.165397414029954 40.0 35.0 40.0 33.0 40.0 34 37.06371573854674 40.0 35.0 40.0 33.0 40.0 35 36.95701490747159 39.0 35.0 40.0 32.0 40.0 36 36.87066168030872 39.0 35.0 40.0 32.0 40.0 37 36.70644944443902 39.0 35.0 40.0 32.0 40.0 38 36.44178289957226 39.0 35.0 40.0 31.0 40.0 39 36.348449212926226 38.0 35.0 40.0 31.0 40.0 40 36.23233968784823 38.0 35.0 40.0 31.0 40.0 41 36.094667325873786 38.0 35.0 40.0 31.0 40.0 42 35.93356161517831 38.0 35.0 40.0 31.0 40.0 43 35.72887599142566 37.0 35.0 40.0 30.0 40.0 44 35.54912666678754 37.0 35.0 40.0 30.0 40.0 45 35.38208460537528 36.0 34.0 40.0 30.0 40.0 46 35.22967861560926 36.0 34.0 40.0 30.0 40.0 47 35.055820664051225 36.0 34.0 39.0 29.0 40.0 48 34.87961836649591 35.0 34.0 39.0 29.0 40.0 49 34.7092176959456 35.0 34.0 39.0 29.0 40.0 50 34.54499088592695 35.0 34.0 39.0 29.0 40.0 51 34.384325328476216 35.0 34.0 39.0 28.0 40.0 52 33.737711272860146 35.0 33.0 37.0 27.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 0.0 11 1.0 12 3.0 13 12.0 14 14.0 15 41.0 16 165.0 17 544.0 18 1409.0 19 3226.0 20 6468.0 21 11646.0 22 19267.0 23 29794.0 24 44352.0 25 64466.0 26 88585.0 27 120489.0 28 159316.0 29 207453.0 30 266850.0 31 334998.0 32 418140.0 33 539829.0 34 845905.0 35 1581213.0 36 1396345.0 37 2667304.0 38 4326588.0 39 1206036.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 28.868913549495623 19.24206754873972 33.586328472029486 18.30269042973517 2 28.9987559673818 19.607920526956597 33.92540406653622 17.467919439125385 3 22.572985803802666 21.863071338018443 35.031979448358 20.531963409820882 4 22.056544908601257 25.05757137497681 40.14553229115384 12.740351425268088 5 0.0 0.0 0.0 100.0 6 100.0 0.0 0.0 0.0 7 0.0 0.0 100.0 0.0 8 0.0 100.0 0.0 0.0 9 0.0 0.0 100.0 0.0 10 0.0 0.0 100.0 0.0 11 99.57866762990867 0.30630816584684173 0.10493387241413456 0.010090331830359695 12 99.74318118107787 0.1948473061533591 0.04439188143197638 0.01757963133679115 13 99.25286218154787 0.3855106461020079 0.10671205805113644 0.25491511429898345 14 67.42448986992049 20.414540398285688 4.46321805576669 7.697751676027129 15 38.29969889389881 23.854088362576935 16.046416921075057 21.799795822449212 16 31.172730860795262 16.618504566799114 26.075976642311332 26.132787930094292 17 25.384039284653355 15.219679145578317 28.495773496805544 30.90050807296279 18 24.07551082740721 16.219103152897464 31.150960289976755 28.554425729718574 19 27.366848762173596 15.264607969339897 28.50103832094647 28.867504947540034 20 32.51239499988146 15.493972996682114 24.308195134605164 27.685436868831264 21 33.540723240398144 17.525909210722666 21.430051755661953 27.503315793217233 22 32.84819315419449 18.230307814393683 21.467846917044504 27.453652114367323 23 32.219461579335665 19.523620581208693 20.515150838954956 27.741767000500683 24 31.550849833268945 21.593379849739826 20.194986771693515 26.66078354529771 25 33.02525163070083 19.422201240406515 21.991449367732972 25.561097761159683 26 31.752496084504962 18.54558361447262 22.14640255612442 27.555517744898 27 32.784792119639114 19.610577345496587 20.74807921084819 26.856551324016102 28 34.00782820076901 17.55915082221909 20.13005858947342 28.30296238753848 29 31.50090722333872 17.327665918666487 20.099703914658246 31.071722943336542 30 29.77443540862706 16.867617914627566 21.90737256684932 31.450574109896056 31 29.10910807603103 17.12810467725582 21.19249312783551 32.570294118877634 32 31.177096132202177 20.589116388177228 19.748264700016595 28.485522779604 33 32.15440787812943 20.36552523419751 19.416894576603543 28.06317231106952 34 31.994622208771546 19.428365617281454 21.072671309009614 27.504340864937387 35 34.99336144028853 19.423554056146035 19.47496802752492 26.108116476040514 36 37.659642717179224 18.658996991728298 18.88469407536439 24.796666215728084 37 36.652889795724825 18.68585108148553 20.77493330060542 23.886325822184226 38 31.8953645838418 21.636042358473855 23.943165003075215 22.525428054609126 39 32.44681132962262 23.47096257721161 22.27892271238161 21.803303380784158 40 31.674792858806484 24.89138423732572 19.03654415548734 24.397278748380458 41 33.54616936974128 23.686757607496553 18.048305284488784 24.71876773827339 42 35.18366216983277 22.947778523143608 17.587462326870966 24.281096980152657 43 34.21482992874705 21.72459600319655 17.868359871301198 26.19221419675519 44 31.861369858428528 21.842144533717885 18.480829764177717 27.815655843675863 45 29.121513535827997 21.588749593806615 19.856587585056545 29.43314928530884 46 28.458849995048972 19.423784174287295 21.364307700031937 30.753058130631793 47 29.23950138280083 17.155628201605808 23.24670198863914 30.358168426954222 48 30.394924570062603 17.112840173885637 22.224593911213447 30.26764134483831 49 31.600129981883423 18.65195398195037 21.64474500817965 28.10317102798655 50 29.94715650683451 21.288884735915026 21.0174987413235 27.746460015926967 51 29.488405532319046 20.554996143777814 21.963695725241728 27.992902598661413 52 30.024441335912517 19.533766699255114 23.90347311034653 26.538318854485837 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 0.0 1 0.0 2 0.0 3 1.5 4 3.0 5 7.0 6 11.0 7 11.5 8 12.0 9 311.5 10 611.0 11 1088.5 12 1566.0 13 2340.5 14 3585.0 15 4055.0 16 4715.0 17 5375.0 18 6742.0 19 8109.0 20 10313.5 21 12518.0 22 16113.0 23 19708.0 24 25396.5 25 31085.0 26 36309.5 27 41534.0 28 44759.5 29 47985.0 30 49993.5 31 52002.0 32 55688.0 33 59374.0 34 62852.0 35 66330.0 36 77177.0 37 88024.0 38 93047.0 39 110455.5 40 122841.0 41 152476.5 42 182112.0 43 215221.5 44 248331.0 45 299025.5 46 349720.0 47 408295.5 48 466871.0 49 541837.0 50 616803.0 51 713369.5 52 809936.0 53 951874.0 54 1093812.0 55 1223295.0 56 1352778.0 57 1487678.0 58 1622578.0 59 1666737.5 60 1710897.0 61 1598395.0 62 1485893.0 63 1305850.5 64 977093.5 65 828379.0 66 727889.5 67 627400.0 68 539008.0 69 450616.0 70 397022.5 71 343429.0 72 269652.0 73 195875.0 74 150590.5 75 105306.0 76 73055.0 77 40804.0 78 28168.0 79 15532.0 80 9549.5 81 3567.0 82 2192.5 83 818.0 84 756.5 85 695.0 86 419.0 87 143.0 88 84.5 89 14.5 90 3.0 91 1.5 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 52 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 52 1.434046E7 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 6.071698664299742 #Duplication Level Percentage of deduplicated Percentage of total 1 70.82715886118008 4.300411658535728 2 9.018039115172618 1.0950963210039282 3 4.322207857594487 0.7872943102734687 4 2.796860490833781 0.6792677642571275 5 1.7066146296488922 0.5181024883656788 6 1.176584820004822 0.4286321088035177 7 0.7646835244734597 0.3250049553910267 8 0.5259781098686128 0.2554864469712127 9 0.3700937659653572 0.20223880420297685 >10 2.536070025762338 3.2350397280912686 >50 0.9864476179864767 4.502207175804564 >100 4.529834965031677 64.93496110739007 >500 0.40377817261302096 15.876576815222535 >1k 0.035531546988990866 2.817487847203755 >5k 1.1649687537374054E-4 0.042192468483199394 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 0.0 0.0 10 0.0 0.0 0.0 0.0 0.0 11 6.066750996829948E-4 0.0 0.0 0.0 0.0 12 0.003005482390383572 0.0 0.0 0.0 0.0 13 0.00391898167841199 0.0 0.0 0.0 0.0 14 0.018346691807654705 0.0 0.0 0.0 0.0 15 0.03759293634932213 0.0 0.0 0.0 0.0 16 0.0487153131768437 0.0 0.0 0.0 0.0 17 0.05717389818736637 0.0 0.0 0.0 0.0 18 0.06513738053033166 0.0 0.0 0.0 0.0 19 0.07337282067660313 0.0 0.0 0.0 0.0 20 0.08327487402775086 0.0 0.0 0.0 0.0 21 0.09383938869464438 0.0 0.0 0.0 0.0 22 0.10500360518421306 0.0 0.0 0.0 0.0 23 0.11908962474007109 0.0 0.0 0.0 0.0 24 0.13269448818238747 0.0 0.0 0.0 0.0 25 0.14708733192659093 0.0 0.0 0.0 0.0 26 0.16234486201976783 0.0 0.0 0.0 0.0 27 0.1792899251488446 0.0 0.0 0.0 0.0 28 0.19565620628626976 0.0 0.0 0.0 0.0 29 0.21419814985014426 0.0 0.0 0.0 0.0 30 0.23441367989590292 0.0 0.0 0.0 0.0 31 0.25179805947647427 0.0 0.0 0.0 0.0 32 0.2681922337219308 0.0 0.0 0.0 0.0 33 0.2822433868927496 0.0 0.0 0.0 0.0 34 0.2957854908419953 0.0 0.0 0.0 0.0 35 0.3088813050627386 0.0 0.0 0.0 0.0 36 0.32190738651340334 0.0 0.0 0.0 0.0 37 0.33376893070375707 0.0 0.0 0.0 0.0 38 0.34823848049504685 0.0 0.0 0.0 0.0 39 0.3679310147652167 0.0 0.0 0.0 0.0 40 0.39896907072715937 0.0 0.0 0.0 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GCGCGTA 27015 0.0 44.578194 2 AAATCGT 6025 0.0 44.549377 1 TTACGTA 46205 0.0 44.50168 2 CGACGTA 14645 0.0 44.460907 2 GACGTAT 74525 0.0 44.459976 3 CCGTATT 190705 0.0 44.41887 4 TTGGGGC 224490 0.0 44.39966 9 TTTCGTA 82935 0.0 44.397057 2 CGCGTAT 77530 0.0 44.37431 3 TACTCGT 8305 0.0 44.366043 1 ACACGTA 17695 0.0 44.36225 2 ACCGTAT 54335 0.0 44.349133 3 TCCGTAT 70615 0.0 44.276997 3 CTTACGT 10325 0.0 44.26247 1 GCCGTAT 53650 0.0 44.255173 3 ATACGTA 27375 0.0 44.235615 2 TTCGTAT 225450 0.0 44.222843 3 TCGTATT 598855 0.0 44.203335 4 ATTCGTA 43130 0.0 44.160213 2 ACGTATT 373025 0.0 44.138542 4 >>END_MODULE