SRR1527949_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1527949_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1107348
Sequences flagged as poor quality	0
Sequence length	59
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CACTGCCTAGGGGGTGGGTGGATCACAAGGTCAGAAGTTCAAGATCAGCTTGGTCAACA	1464	0.13220776124578723	No Hit
GGTGGCCTAGGGGGATCACGAGGTCAAGAGGTCAAGACCATCCTGGCCAACGTGGTGAA	1241	0.1120695571762445	No Hit
TTGGGCCTAGAGGGGGCCCCTCGGAGCTGGAAATGCAACTCTCGGGATCCTCGGAGGCT	1234	0.11143741624132612	No Hit
GAATGCCTAGGGGGGCTTTCTGCGCTCTCGCTGGACAAGTGAGCAGGGACGGCCTCAGG	1168	0.10547723028352424	No Hit
GTTGGCCTAGGGAAGCAGTGGGGGAAAGGTTAACACTTCGGAGGCTGAGGAGGGTAGAT	1157	0.10448386595722392	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCGACGT	15	0.006696201	53.000004	52
CTCGTCG	15	0.006696201	53.000004	42
CAAGTAA	15	0.006696201	53.000004	26
CTATATT	30	7.0102396E-7	53.000004	48
CTCCCGA	15	0.006696201	53.000004	18
ACCGACT	30	7.0102396E-7	53.000004	46
TAAACAC	75	0.0	53.000004	41
CAACATA	15	0.006696201	53.000004	26
TACATGA	15	0.006696201	53.000004	43
CTGCGAC	30	7.0102396E-7	53.000004	48
CTAACTA	15	0.006696201	53.000004	28
ACGATGC	15	0.006696201	53.000004	31
CCACTAT	90	0.0	53.000004	17
CACTCAC	60	0.0	53.000004	48
TCTAATA	15	0.006696201	53.000004	53
CGTACTA	15	0.006696201	53.000004	49
CGAGCTA	45	7.6397555E-11	53.000004	21
TACTCGA	15	0.006696201	53.000004	16
CCCCACG	15	0.006696201	53.000004	28
TCCCGGA	30	7.0102396E-7	53.000004	32