##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1527945_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 2226704 Sequences flagged as poor quality 0 Sequence length 52 %GC 61 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.253551437460928 31.0 31.0 33.0 30.0 34.0 2 31.857983818235383 31.0 31.0 34.0 30.0 34.0 3 32.023577449000854 31.0 31.0 34.0 30.0 34.0 4 35.816692744073755 37.0 35.0 37.0 35.0 37.0 5 35.828687602842585 37.0 35.0 37.0 35.0 37.0 6 35.784230863195106 37.0 35.0 37.0 35.0 37.0 7 34.95794591467927 35.0 35.0 36.0 33.0 37.0 8 35.40844809188828 35.0 35.0 37.0 35.0 37.0 9 37.219372220106486 39.0 37.0 39.0 35.0 39.0 10 37.262058630154705 39.0 37.0 39.0 35.0 39.0 11 38.013780008478896 39.0 37.0 39.0 35.0 39.0 12 37.985344257701065 39.0 37.0 39.0 35.0 39.0 13 37.60024143307777 39.0 37.0 39.0 35.0 39.0 14 37.316631218159216 40.0 37.0 40.0 31.0 40.0 15 34.50564511493221 37.0 32.0 39.0 25.0 40.0 16 33.510480063807314 36.0 31.0 39.0 22.0 40.0 17 33.216417179831716 35.0 31.0 39.0 22.0 40.0 18 33.1811794472907 35.0 31.0 39.0 22.0 40.0 19 33.40514365627403 35.0 31.0 39.0 23.0 40.0 20 33.36696525447478 35.0 31.0 39.0 23.0 40.0 21 32.95098495354569 35.0 30.0 38.0 23.0 40.0 22 32.8309115176512 35.0 30.0 38.0 23.0 40.0 23 32.47520236187657 34.0 30.0 38.0 22.0 40.0 24 32.258846707959385 34.0 29.0 37.0 22.0 40.0 25 32.949768806271514 35.0 30.0 38.0 23.0 40.0 26 32.96413353548563 35.0 31.0 38.0 23.0 40.0 27 32.99869897390942 35.0 31.0 37.0 24.0 40.0 28 32.95461273703195 35.0 31.0 37.0 24.0 40.0 29 32.80405478231503 35.0 31.0 37.0 23.0 40.0 30 32.677851658774586 35.0 31.0 37.0 23.0 40.0 31 32.45714832326165 34.0 31.0 36.0 23.0 39.0 32 32.176329678304796 34.0 31.0 36.0 22.0 39.0 33 31.94446859573612 34.0 30.0 36.0 22.0 39.0 34 31.76128888258161 34.0 30.0 35.0 21.0 39.0 35 31.667289410716467 34.0 30.0 35.0 21.0 39.0 36 31.551444646437066 34.0 30.0 35.0 21.0 38.0 37 31.45884949234384 34.0 30.0 35.0 21.0 37.0 38 31.178592215220345 34.0 30.0 35.0 21.0 37.0 39 31.070959588701506 34.0 30.0 35.0 21.0 37.0 40 30.85302222477707 33.0 30.0 35.0 20.0 36.0 41 30.663212982057786 33.0 29.0 35.0 20.0 36.0 42 30.61068107840108 33.0 29.0 35.0 20.0 36.0 43 30.318900491488765 33.0 29.0 35.0 18.0 36.0 44 30.153467636470765 33.0 29.0 35.0 18.0 35.0 45 30.063343848127097 33.0 29.0 35.0 20.0 35.0 46 29.964058536743096 33.0 28.0 35.0 18.0 35.0 47 29.95256217261028 33.0 29.0 35.0 18.0 35.0 48 29.82548151887274 33.0 28.0 35.0 18.0 35.0 49 29.808001422730637 33.0 28.0 35.0 18.0 35.0 50 29.647368487234946 33.0 27.0 35.0 18.0 35.0 51 29.44448476312972 33.0 27.0 35.0 17.0 35.0 52 28.918989232515862 33.0 26.0 35.0 15.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 2.0 12 5.0 13 15.0 14 36.0 15 181.0 16 519.0 17 1109.0 18 2314.0 19 4304.0 20 7740.0 21 12389.0 22 18466.0 23 26242.0 24 35840.0 25 47584.0 26 60241.0 27 75397.0 28 92357.0 29 110014.0 30 132375.0 31 155606.0 32 182118.0 33 209004.0 34 259591.0 35 330352.0 36 270969.0 37 136949.0 38 50158.0 39 4826.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 28.639325208918653 21.223386673756366 33.92197615848357 16.215311958841408 2 23.132486401425606 21.67409767979938 34.02598639064735 21.16742952812767 3 21.586793754356215 19.899771141561697 40.59304694292551 17.92038816115658 4 31.977891987439733 17.85500003592754 30.910350006107684 19.256757970525047 5 0.0 0.0 0.0 100.0 6 100.0 0.0 0.0 0.0 7 0.0 0.0 100.0 0.0 8 100.0 0.0 0.0 0.0 9 100.0 0.0 0.0 0.0 10 0.0 0.0 0.0 100.0 11 99.06206662403265 0.6532525203170246 0.15574589168564837 0.12893496396467605 12 99.01549554857763 0.6994194109320322 0.15489261257895076 0.13019242791138833 13 96.5331269894876 2.0567619225545917 0.594466080808226 0.8156450071495807 14 59.782350954594776 25.747607225747117 4.889693466217333 9.58034835344078 15 34.69679849679167 27.185113063972583 18.54157535083244 19.576513088403306 16 32.38364865738778 18.245083315968355 24.099116901033995 25.27215112560987 17 23.934209486308013 18.06558033757518 29.305287096982806 28.694923079134004 18 22.761265080585474 20.82822862850204 30.139928791613073 26.270577499299414 19 25.201418778607305 20.887284524570845 27.368792619045905 26.54250407777594 20 27.524628329584893 19.637994093512205 26.79305376915836 26.04432380774454 21 32.16893668848666 19.626227823725113 21.149959761153706 27.054875726634524 22 30.85277612111893 20.056864316047395 21.955634875582923 27.134724687250756 23 31.24276958230641 20.313431870603367 20.703110965804168 27.74068758128606 24 29.524445099124087 22.23838462588651 20.268073349668388 27.96909692532101 25 32.339906875812865 18.617157915915183 22.747118611184963 26.295816597086997 26 30.979779979736865 20.14205749843715 21.315271360719702 27.56289116110628 27 31.360342461324002 22.845155889601852 19.0561026521711 26.738398996903044 28 31.346106173070154 22.711235979276996 19.247237172071365 26.695420675581488 29 32.28210844369077 20.972747163520612 19.50479273401404 27.240351658774582 30 31.197366151944756 20.993809684628044 19.29511062089977 28.51371354252743 31 30.92921196530837 21.18512384223498 19.835550661426034 28.050113531030618 32 31.426763503366413 23.028476169261832 19.41735408029087 26.127406247080888 33 30.95566361761599 23.214580833375248 18.699746351558176 27.130009197450583 34 29.794575300533882 24.990973205239673 19.127463731147024 26.08698776307942 35 30.642914370297987 24.620200978666226 19.19051656618931 25.54636808484648 36 32.04202264872206 23.457765378784067 19.74532762324943 24.754884349244442 37 32.284892828144194 24.46467963411392 18.786466454454658 24.463961083287224 38 30.183131660067975 26.061479208731832 20.861551423089914 22.893837708110283 39 31.31749886828245 25.836348252843667 20.744427638338998 22.10172524053489 40 31.831711803634434 25.830510027376786 18.14012998584455 24.197648183144235 41 31.46363414266108 26.63735278689938 17.82787474221989 24.071138328219646 42 33.08356207201316 25.86666211584476 17.55783435966343 23.491941452478642 43 31.882145089782927 24.596758257945375 19.03423176138364 24.486864890888057 44 31.63195467381385 25.42524736112209 19.46078149587911 23.482016469184945 45 28.70974318993454 25.928232939807 19.1286313762404 26.233392494018066 46 29.521256529830637 24.246330001652666 20.329239988790608 25.90317347972609 47 29.76776437281291 23.809316370743485 21.43854773692417 24.98437151951943 48 29.271021204434895 23.587239255868763 21.52338164390058 25.618357895795757 49 28.509132781007263 23.22971531016246 20.894649670544446 27.366502238285822 50 29.26612607692805 23.8391811394779 19.93161192506952 26.96308085852453 51 27.204693573999954 25.455291767563175 21.76081778269586 25.579196875741005 52 27.660614073536493 25.8401206446838 21.75232990105555 24.746935380724157 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 1.0 10 2.0 11 6.5 12 11.0 13 59.0 14 191.0 15 275.0 16 528.5 17 782.0 18 1276.5 19 1771.0 20 1898.5 21 2026.0 22 2242.5 23 2459.0 24 2955.5 25 3452.0 26 4286.5 27 5121.0 28 7056.0 29 8991.0 30 11278.0 31 13565.0 32 15881.0 33 18197.0 34 19094.0 35 19991.0 36 20436.0 37 20881.0 38 20505.0 39 22669.5 40 25210.0 41 27212.5 42 29215.0 43 30964.5 44 32714.0 45 34269.5 46 35825.0 47 39324.5 48 42824.0 49 45278.0 50 47732.0 51 54073.5 52 60415.0 53 73427.0 54 86439.0 55 93475.5 56 100512.0 57 114933.0 58 129354.0 59 152495.0 60 175636.0 61 187577.0 62 199518.0 63 211304.0 64 216507.5 65 209925.0 66 194040.0 67 178155.0 68 168198.5 69 158242.0 70 140205.5 71 122169.0 72 103876.5 73 85584.0 74 77375.0 75 69166.0 76 56810.5 77 44455.0 78 37749.5 79 31044.0 80 21512.5 81 11981.0 82 9162.0 83 6343.0 84 4028.0 85 1713.0 86 1307.0 87 901.0 88 620.5 89 271.0 90 202.0 91 157.5 92 113.0 93 98.0 94 83.0 95 63.0 96 43.0 97 22.0 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 52 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 52 2226704.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 14.643529303404277 #Duplication Level Percentage of deduplicated Percentage of total 1 77.3808345372718 11.331285180684173 2 8.33445918149669 2.4409179450454723 3 3.738964819959038 1.6425492271640358 4 2.123618127852726 1.2438905713780768 5 1.3998797126949496 1.0249589797044827 6 0.9281914899172284 0.8155199569064046 7 0.6657631520641855 0.6824385558465089 8 0.4887943447528865 0.5726139448581749 9 0.36740740780968906 0.4842127028294088 >10 2.539063731131199 7.385801449384756 >50 0.4415464775970471 4.74069786825404 >100 1.4226233087278097 49.53097513073561 >500 0.15036607638269306 14.516185730081268 >1k 0.01848763234213439 3.587952757127594 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 0.0 0.0 10 0.0 0.0 0.0 0.0 0.0 11 0.003952029546809993 0.0 0.0 0.0 0.0 12 0.01585302761390827 0.0 0.0 0.0 0.0 13 0.01809849894732304 0.0 0.0 0.0 0.0 14 0.0427537741882172 0.0 0.0 0.0 0.0 15 0.07163053553593113 0.0 0.0 0.0 0.0 16 0.09430979600342031 0.0 0.0 0.0 0.0 17 0.11249811380407994 0.0 0.0 0.0 0.0 18 0.13378518204485193 0.0 0.0 0.0 0.0 19 0.15893446097909736 0.0 0.0 0.0 0.0 20 0.18623939239342094 0.0 0.0 0.0 0.0 21 0.21331977667440308 0.0 0.0 0.0 0.0 22 0.2430498171288146 0.0 0.0 0.0 0.0 23 0.2678398206497137 0.0 0.0 0.0 0.0 24 0.2936627409839835 0.0 0.0 0.0 0.0 25 0.32177604207833643 0.0 0.0 0.0 0.0 26 0.3542904669861823 0.0 0.0 0.0 0.0 27 0.3930922116275895 0.0 0.0 0.0 0.0 28 0.43045685461561123 0.0 0.0 0.0 0.0 29 0.47707283949730184 0.0 0.0 0.0 0.0 30 0.5373412900861543 0.0 0.0 0.0 0.0 31 0.5883134893546695 0.0 0.0 0.0 0.0 32 0.6225344724759105 0.0 0.0 0.0 0.0 33 0.6515010526769611 0.0 0.0 0.0 0.0 34 0.6834316550381191 0.0 0.0 0.0 0.0 35 0.7144640688659112 0.0 0.0 0.0 0.0 36 0.7445982941603374 0.0 0.0 0.0 0.0 37 0.7800767412282907 0.0 0.0 0.0 0.0 38 0.819327580136381 0.0 0.0 0.0 0.0 39 0.8598807924178516 0.0 0.0 0.0 0.0 40 0.9026345666060689 0.0 0.0 0.0 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTATTA 105 0.0 46.000004 23 CATATAG 105 0.0 46.000004 42 ATCCGAT 105 0.0 46.000004 25 TCGGACA 105 0.0 46.000004 17 CCATATA 105 0.0 46.000004 41 AACGACC 55 1.8189894E-12 46.000004 35 TCCCGAT 105 0.0 46.000004 40 ATTGATC 55 1.8189894E-12 46.000004 14 ACCTTAT 55 1.8189894E-12 46.000004 45 TCACGAA 30 1.862194E-6 46.0 38 CGGAATA 75 0.0 46.0 13 ACTATTG 40 5.6152203E-9 46.0 18 AACCGTC 80 0.0 46.0 34 TAATAGC 30 1.862194E-6 46.0 41 TCGCATA 25 3.418195E-5 46.0 31 CATATGG 30 1.862194E-6 46.0 44 ATTAGCA 40 5.6152203E-9 46.0 26 CTCAAAC 25 3.418195E-5 46.0 15 TCACATA 40 5.6152203E-9 46.0 29 TAGGTTA 20 6.3127367E-4 46.0 22 >>END_MODULE