##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1527944_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 2233856 Sequences flagged as poor quality 0 Sequence length 52 %GC 60 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.200191507420353 31.0 31.0 33.0 30.0 34.0 2 31.722190239657348 31.0 31.0 34.0 30.0 34.0 3 31.974985406400414 31.0 31.0 34.0 30.0 34.0 4 35.80174147304034 37.0 35.0 37.0 35.0 37.0 5 35.82452181340248 37.0 35.0 37.0 35.0 37.0 6 35.788922831194135 37.0 35.0 37.0 35.0 37.0 7 34.93274006918978 35.0 35.0 36.0 33.0 37.0 8 35.343831921126515 35.0 35.0 37.0 35.0 37.0 9 37.212463113110246 39.0 37.0 39.0 35.0 39.0 10 37.247174392619755 39.0 37.0 39.0 35.0 39.0 11 38.01329539594316 39.0 37.0 39.0 35.0 39.0 12 37.97561704962182 39.0 37.0 39.0 35.0 39.0 13 37.661485789594316 39.0 37.0 39.0 35.0 39.0 14 37.439755740746044 40.0 37.0 40.0 31.0 40.0 15 34.67343776859386 37.0 32.0 39.0 25.0 40.0 16 33.7169786235102 36.0 31.0 39.0 23.0 40.0 17 33.435029384168004 35.0 31.0 39.0 23.0 40.0 18 33.43722872020399 35.0 31.0 39.0 23.0 40.0 19 33.62851455062457 35.0 31.0 39.0 24.0 40.0 20 33.586926373051796 35.0 31.0 39.0 24.0 40.0 21 33.36330721407288 35.0 31.0 39.0 24.0 40.0 22 33.166457909551916 35.0 31.0 38.0 23.0 40.0 23 32.776113142476504 35.0 30.0 38.0 23.0 40.0 24 32.54315005085377 34.0 30.0 38.0 22.0 40.0 25 32.346857183274125 34.0 30.0 37.0 22.0 40.0 26 32.705267483669495 35.0 30.0 37.0 23.0 40.0 27 32.86515827340706 35.0 31.0 37.0 23.0 40.0 28 32.77223957139583 35.0 31.0 37.0 23.0 40.0 29 32.738202462468486 35.0 31.0 37.0 23.0 40.0 30 32.70078420453243 35.0 31.0 37.0 23.0 40.0 31 32.536973735101995 34.0 31.0 36.0 23.0 39.0 32 32.27684327011231 34.0 31.0 36.0 23.0 39.0 33 32.044469294350215 34.0 31.0 36.0 22.0 39.0 34 31.873345461838184 34.0 30.0 35.0 22.0 39.0 35 31.711583915883566 34.0 30.0 35.0 22.0 39.0 36 31.26435499871075 34.0 30.0 35.0 21.0 38.0 37 31.322237870301397 34.0 30.0 35.0 21.0 37.0 38 31.162875762806554 34.0 30.0 35.0 21.0 37.0 39 31.094105439204675 34.0 30.0 35.0 21.0 37.0 40 30.887066131388952 34.0 30.0 35.0 20.0 36.0 41 30.71980960276759 33.0 29.0 35.0 20.0 36.0 42 30.5394121196711 33.0 29.0 35.0 20.0 36.0 43 30.25050182285698 33.0 29.0 35.0 18.0 36.0 44 30.09189222581939 33.0 29.0 35.0 18.0 35.0 45 29.796704890556956 33.0 27.0 35.0 18.0 35.0 46 29.817619846579188 33.0 27.0 35.0 18.0 35.0 47 29.86443620358698 33.0 28.0 35.0 18.0 35.0 48 29.728617690665825 33.0 27.0 35.0 18.0 35.0 49 29.724109790425167 33.0 27.0 35.0 18.0 35.0 50 29.514739087926884 33.0 27.0 35.0 17.0 35.0 51 29.387355765098555 33.0 27.0 35.0 17.0 35.0 52 29.001400716966536 33.0 27.0 35.0 15.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 2.0 11 3.0 12 9.0 13 4.0 14 36.0 15 171.0 16 457.0 17 1080.0 18 2180.0 19 4421.0 20 7482.0 21 11931.0 22 18234.0 23 26002.0 24 35625.0 25 46925.0 26 60394.0 27 75355.0 28 93326.0 29 110511.0 30 132347.0 31 156684.0 32 183788.0 33 211807.0 34 263386.0 35 330680.0 36 270695.0 37 135564.0 38 49918.0 39 4838.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 28.703327340705936 21.185295739743296 33.842020255558104 16.269356663992664 2 23.250424378294753 21.767651988310796 33.8692377664451 21.112685866949345 3 21.752610732294293 19.900432257047903 40.465544779967914 17.881412230689893 4 31.884060566124226 17.812159781113913 31.081457354457942 19.222322298303922 5 0.0 0.0 0.0 100.0 6 100.0 0.0 0.0 0.0 7 0.0 0.0 100.0 0.0 8 100.0 0.0 0.0 0.0 9 100.0 0.0 0.0 0.0 10 0.0 0.0 0.0 100.0 11 99.07232158205363 0.6479826810680724 0.15108404480861792 0.12861169206967682 12 98.99742866147146 0.7051484070593629 0.16478233153793262 0.13264059993123997 13 96.53222947226678 2.052683789823516 0.6025903191611276 0.8124964187485675 14 59.74977796241119 25.692703558331427 4.98161027389411 9.575908205363282 15 34.52872521774009 27.240162302314918 18.669959030483614 19.56115344946138 16 32.230860001719 18.190071338528536 24.318801211895487 25.260267447856975 17 23.820380543777215 18.057833629383452 29.499081409007566 28.62270441783177 18 22.683422745244098 20.778778936511575 30.21864435308274 26.319153965161586 19 25.178256790052718 20.805772619184047 27.47092919149668 26.545041399266562 20 27.501548891244553 19.6156780025212 26.849134411528762 26.03363869470548 21 31.888044708342882 19.6149617522347 21.1774617522347 27.319531787187717 22 30.821503266101306 20.051426770570707 21.956652532661014 27.170417430666973 23 31.196191697226677 20.314603985216596 20.721255085377035 27.767949232179696 24 29.38143729944992 22.26325242092597 20.40234464531286 27.952965634311255 25 32.56843771487509 18.48221192413477 22.577731062342423 26.37161929864772 26 30.869805394797154 20.229817857552142 21.326665640041256 27.573711107609444 27 31.32149073172129 22.855098985789592 19.091293261517308 26.732117020971806 28 31.41549858182443 22.73817112651845 19.274429506646804 26.571900785010317 29 32.18707920295668 21.026601535640616 19.535368439147376 27.250950822255326 30 31.13786206451983 21.037703415081367 19.360290009741004 28.464144510657803 31 30.84442327526931 21.2883462497135 19.81161722152189 28.055613253495302 32 31.391504197226677 23.15596887176255 19.341040783291312 26.11148614771946 33 30.89836587497135 23.280730718542287 18.77887383967454 27.042029566811827 34 29.757468699862482 25.03979665654366 19.20387885342654 25.998855790167312 35 30.60734443043777 24.69138565780426 19.161351492665595 25.539918419092366 36 32.1099480002292 23.400568344602338 19.770029939261978 24.719453715906486 37 32.216803589846435 24.497953314806324 18.843023005959203 24.442220089388037 38 30.15346557701123 26.115291227366487 20.926416026816412 22.804827168805865 39 31.309941195851476 25.827269080907634 20.720538835090537 22.142250888150354 40 31.766595519138207 25.86970691038276 18.15296062055925 24.21073694991978 41 31.415946238253493 26.7062872450149 17.814980016617007 24.0627865001146 42 33.25984306956223 25.840027289135914 17.577140155856064 23.322989485445795 43 31.854425710520285 24.643755013752006 19.055435981549394 24.446383294178318 44 31.879807830048136 25.373524524409806 19.366512434104973 23.380155211437085 45 28.766984084918633 25.92678310508824 19.192732208342882 26.11350060165024 46 29.507900240660096 24.294941124226447 20.253230288792114 25.94392834632134 47 29.737816582626632 23.882560021774008 21.4550535038964 24.92456989170296 48 29.332821811253723 23.682054707196883 21.44180287359615 25.54332060795324 49 28.54955735732294 23.305262290854916 20.942173533119412 27.20300681870273 50 29.27856585205134 23.854939620100847 19.95370337210635 26.912791155741463 51 27.17238711895485 25.515744971922988 21.744866276071512 25.56700163305065 52 27.551910239514093 25.839803460921384 21.82356427630071 24.784722023263807 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 6.0 12 12.0 13 63.5 14 176.5 15 238.0 16 479.0 17 720.0 18 1240.0 19 1760.0 20 1836.0 21 1912.0 22 2175.5 23 2439.0 24 2882.0 25 3325.0 26 4231.0 27 5137.0 28 7033.5 29 8930.0 30 11318.5 31 13707.0 32 16186.5 33 18666.0 34 19428.5 35 20191.0 36 20636.5 37 21082.0 38 20990.0 39 23237.5 40 25577.0 41 27480.0 42 29383.0 43 31095.5 44 32808.0 45 34533.0 46 36258.0 47 39819.0 48 43380.0 49 46066.0 50 48752.0 51 54943.5 52 61135.0 53 73825.5 54 86516.0 55 93991.5 56 101467.0 57 116006.0 58 130545.0 59 152878.0 60 175211.0 61 187856.5 62 200502.0 63 211023.0 64 215936.5 65 210329.0 66 194537.5 67 178746.0 68 168181.0 69 157616.0 70 139961.5 71 122307.0 72 104334.5 73 86362.0 74 77812.0 75 69262.0 76 56715.5 77 44169.0 78 37591.5 79 31014.0 80 21598.5 81 12183.0 82 9270.0 83 6357.0 84 4063.0 85 1769.0 86 1304.0 87 839.0 88 579.5 89 257.5 90 195.0 91 145.0 92 95.0 93 78.0 94 61.0 95 41.5 96 22.0 97 11.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 52 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 52 2233856.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 15.00225582791897 #Duplication Level Percentage of deduplicated Percentage of total 1 77.08675711954331 11.56475251252043 2 8.739597168327679 2.622273451044161 3 3.762529777339562 1.6933930283943335 4 2.150770347896377 1.2906562794497494 5 1.358798873864281 1.0192524162200072 6 0.9039430137042335 0.8136710607270584 7 0.6449021724747183 0.6772491162812513 8 0.48354129831701664 0.5803368208572776 9 0.37472284706594844 0.5059519214624563 >10 2.466052219977743 7.3168407094188685 >50 0.4370212784999995 4.818721061455969 >100 1.4343336204988322 50.1003264918079 >500 0.13968569700815467 13.630278591192438 >1k 0.017344565482165546 3.3662965391681308 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 0.0 0.0 10 0.0 0.0 0.0 0.0 0.0 11 0.0042975017190006876 0.0 0.0 0.0 0.0 12 0.01607086580334632 0.0 0.0 0.0 0.0 13 0.01844344487737795 0.0 0.0 0.0 0.0 14 0.044899939834975935 0.0 0.0 0.0 0.0 15 0.07198315379326152 0.0 0.0 0.0 0.0 16 0.09494792860417144 0.0 0.0 0.0 0.0 17 0.11200363855145543 0.0 0.0 0.0 0.0 18 0.13393880357552143 0.0 0.0 0.0 0.0 19 0.15847037588815036 0.0 0.0 0.0 0.0 20 0.1883290597066239 0.0 0.0 0.0 0.0 21 0.21330828844831537 0.0 0.0 0.0 0.0 22 0.24231642505157003 0.0 0.0 0.0 0.0 23 0.2686833887233555 0.0 0.0 0.0 0.0 24 0.29590089961035987 0.0 0.0 0.0 0.0 25 0.3264310680724272 0.0 0.0 0.0 0.0 26 0.36058725360990146 0.0 0.0 0.0 0.0 27 0.40141351994040797 0.0 0.0 0.0 0.0 28 0.44018056669722666 0.0 0.0 0.0 0.0 29 0.4876769138207655 0.0 0.0 0.0 0.0 30 0.5481105317442126 0.0 0.0 0.0 0.0 31 0.6015607093742837 0.0 0.0 0.0 0.0 32 0.6364331451982581 0.0 0.0 0.0 0.0 33 0.667231907517763 0.0 0.0 0.0 0.0 34 0.6986126231950492 0.0 0.0 0.0 0.0 35 0.7301724014439606 0.0 0.0 0.0 0.0 36 0.7606130386202155 0.0 0.0 0.0 0.0 37 0.7954407088012835 0.0 0.0 0.0 0.0 38 0.8330438488425396 0.0 0.0 0.0 0.0 39 0.8767798819619528 0.0 0.0 0.0 0.0 40 0.9173823200779281 0.0 0.0 0.0 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTATTA 140 0.0 46.000004 23 CATATAG 70 0.0 46.000004 42 TCACATA 35 1.0201438E-7 46.000004 29 TATGGAC 35 1.0201438E-7 46.000004 14 GAATACC 35 1.0201438E-7 46.000004 25 GCTAGTT 35 1.0201438E-7 46.000004 28 TCATATC 35 1.0201438E-7 46.000004 17 CGCGTTA 70 0.0 46.000004 44 AATAGGT 35 1.0201438E-7 46.000004 39 CCTATAT 35 1.0201438E-7 46.000004 17 TGCGTAT 140 0.0 46.000004 21 TCACGAA 55 1.8189894E-12 46.0 38 ATTTACG 40 5.6152203E-9 46.0 30 ACTATTA 80 0.0 46.0 24 GTACCTA 20 6.31274E-4 46.0 44 CTACTTA 40 5.6152203E-9 46.0 41 CATATCG 30 1.8621977E-6 46.0 28 CATATAA 20 6.31274E-4 46.0 32 CCGATAT 110 0.0 46.0 31 TAGAATC 30 1.8621977E-6 46.0 46 >>END_MODULE