SRR1527943_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1527943_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1385581
Sequences flagged as poor quality	0
Sequence length	59
%GC	60

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
TTCGCGTGGCGGATTTGCCACTGTTGGCTGGGCGCAGTGGCTCACACCTGTAATCCCAG	1697	0.12247569792022263	No Hit
TGCGCGTGGCGGGAGCTTCTGTCAACTGTGTTGCGCCAATGGTGGAGAAGAAACCCGCC	1601	0.1155471964468335	No Hit
GTTACGTGGCGGGGCATTACCATTGTTGCTATCACCCTTAGTCTTCTGGAAAGGTTGAA	1591	0.11482547754335547	No Hit
GTCGCGTGGCGGGCATGCCGACGGGCGCTGACCCCCCTTCCCGGGGGGGGATGCGTGCA	1495	0.10789697606996632	No Hit
GCTGCGTGGCGGGACGCAGAGTGGTACGTGGCGGGGTCTCGCAACCCAAGATGGCGGAT	1412	0.10190670917109862	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GATAAGT	75	0.0	53.000004	44
TGCGTAT	75	0.0	53.000004	21
AACCGTT	20	3.13847E-4	53.0	29
GATAATT	40	1.6007107E-9	53.0	19
CATATAC	40	1.6007107E-9	53.0	47
CATATAA	50	3.6379788E-12	53.0	32
ATTAGCG	35	3.342757E-8	53.0	47
ATAGGTG	40	1.6007107E-9	53.0	49
ACTGATA	30	7.011531E-7	53.0	17
AGATAAT	45	7.6397555E-11	53.0	14
CCGATAA	40	1.6007107E-9	53.0	48
CTATCAG	40	1.6007107E-9	53.0	33
TCCGAAT	55	0.0	53.0	52
TTATGTA	30	7.011531E-7	53.0	23
ATAATAT	15	0.006696556	53.0	45
GACGTAA	20	3.13847E-4	53.0	13
TATGGAC	40	1.6007107E-9	53.0	14
ATTACAT	30	7.011531E-7	53.0	48
CCAATTA	15	0.006696556	53.0	34
ATGCTTA	15	0.006696556	53.0	14