##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1527943_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1385581 Sequences flagged as poor quality 0 Sequence length 59 %GC 60 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.782561972197943 31.0 31.0 31.0 30.0 33.0 2 31.285549527598892 31.0 31.0 31.0 30.0 34.0 3 31.466156796318657 31.0 31.0 34.0 30.0 34.0 4 35.50140987787795 35.0 35.0 37.0 35.0 37.0 5 35.45584126803124 35.0 35.0 37.0 35.0 37.0 6 35.42742719480131 35.0 35.0 37.0 35.0 37.0 7 34.53836838120615 35.0 35.0 35.0 32.0 37.0 8 35.017908011152 35.0 35.0 37.0 35.0 37.0 9 36.803621729801435 37.0 35.0 39.0 35.0 39.0 10 36.67047253101767 37.0 35.0 39.0 35.0 39.0 11 37.414885163696674 39.0 37.0 39.0 35.0 39.0 12 37.43273399389859 39.0 37.0 39.0 35.0 39.0 13 36.36475168178548 37.0 35.0 39.0 32.0 39.0 14 35.16728578119937 38.0 33.0 40.0 25.0 40.0 15 31.156182135869358 35.0 26.0 38.0 15.0 39.0 16 29.822617371340975 32.0 25.0 37.0 15.0 39.0 17 29.44436305059033 32.0 24.0 37.0 15.0 39.0 18 29.340556777265277 32.0 24.0 37.0 15.0 39.0 19 30.753544541964708 33.0 26.0 37.0 18.0 40.0 20 31.09964123353308 33.0 27.0 38.0 20.0 40.0 21 31.094924800498852 33.0 27.0 37.0 20.0 40.0 22 31.148003617255146 33.0 28.0 37.0 20.0 40.0 23 30.837728721742 33.0 27.0 37.0 19.0 39.0 24 30.706375881308997 33.0 27.0 37.0 19.0 39.0 25 30.604313280854747 33.0 27.0 37.0 18.0 39.0 26 29.99416706782209 33.0 26.0 36.0 17.0 39.0 27 29.678811992947363 33.0 26.0 36.0 15.0 39.0 28 29.53356606362241 32.0 26.0 36.0 15.0 39.0 29 29.225574686719867 32.0 25.0 35.0 15.0 39.0 30 29.148912261354624 32.0 25.0 35.0 15.0 39.0 31 29.027612243528168 32.0 24.0 35.0 15.0 39.0 32 28.668445222617805 32.0 23.0 35.0 13.0 38.0 33 28.33145373673571 31.0 23.0 35.0 12.0 38.0 34 28.17138658800893 31.0 23.0 35.0 12.0 37.0 35 28.037688161139624 31.0 23.0 35.0 12.0 37.0 36 27.788666992402465 31.0 23.0 34.0 11.0 37.0 37 27.71885584458794 31.0 23.0 34.0 11.0 36.0 38 27.370573066460928 31.0 22.0 34.0 10.0 36.0 39 27.26058166213307 31.0 22.0 34.0 10.0 36.0 40 27.060422306599182 31.0 22.0 34.0 10.0 36.0 41 26.841460730191883 31.0 21.0 34.0 9.0 35.0 42 26.73492347253607 30.0 21.0 34.0 9.0 35.0 43 26.396726716085166 30.0 20.0 34.0 9.0 35.0 44 26.11770224909262 30.0 20.0 34.0 9.0 35.0 45 26.025537301680668 30.0 20.0 34.0 8.0 35.0 46 25.90996845366673 30.0 20.0 34.0 8.0 35.0 47 25.85362818918562 30.0 20.0 34.0 8.0 35.0 48 25.733359507672233 30.0 20.0 34.0 8.0 35.0 49 25.755646187411635 30.0 20.0 34.0 8.0 35.0 50 25.47391238765543 29.0 18.0 33.0 8.0 35.0 51 25.291770744546874 29.0 18.0 33.0 8.0 35.0 52 25.146385523473548 29.0 18.0 33.0 8.0 35.0 53 25.054739491953196 29.0 18.0 33.0 8.0 35.0 54 24.854756235831754 29.0 18.0 33.0 8.0 35.0 55 24.85424237197248 29.0 18.0 33.0 8.0 35.0 56 24.77711010760107 29.0 18.0 33.0 8.0 35.0 57 24.674137419609536 29.0 18.0 33.0 8.0 35.0 58 24.411592682059005 29.0 17.0 33.0 8.0 35.0 59 24.063589930866545 27.0 15.0 33.0 8.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 4.0 12 16.0 13 124.0 14 647.0 15 1986.0 16 4844.0 17 9715.0 18 16045.0 19 23444.0 20 30996.0 21 38685.0 22 46574.0 23 53944.0 24 61568.0 25 69186.0 26 76523.0 27 82993.0 28 87089.0 29 90611.0 30 94114.0 31 96553.0 32 98803.0 33 99966.0 34 102758.0 35 93578.0 36 62038.0 37 29879.0 38 12199.0 39 699.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 28.473398523796156 21.517038700732762 34.058059398909194 15.95150337656189 2 22.699069920849087 22.542673434465396 33.030331680356475 21.72792496432904 3 15.506419328786986 18.077182062975748 46.835443037974684 19.580955570262585 4 37.5738408653121 22.622784232751457 18.826831488018385 20.976543413918062 5 0.0 0.0 0.0 100.0 6 100.0 0.0 0.0 0.0 7 0.0 0.0 100.0 0.0 8 100.0 0.0 0.0 0.0 9 100.0 0.0 0.0 0.0 10 0.0 0.0 0.0 100.0 11 98.59481329492826 0.9589479070512658 0.23455864363036155 0.21168015439010784 12 98.4494591077678 1.1035082034179164 0.24127062943270727 0.20576205938158793 13 94.49227435999772 3.2782637752682806 0.9454517635562265 1.2840101011777731 14 58.93008059434995 26.97460487694332 3.906159221294172 10.189155307412557 15 36.556866758421194 26.104933598252284 17.708528047079167 19.62967159624735 16 34.435229697866816 19.05078086376762 21.559547944147617 24.95444149421795 17 24.67968310766386 18.251332834384996 28.658663766318966 28.410320291632175 18 23.274135543140385 23.613704287226803 27.84571959344131 25.266440576191503 19 26.647738385558117 22.881520459648335 24.573301741291196 25.897439413502347 20 28.88990250299333 20.7912059995049 25.033397542258445 25.285493955243325 21 31.781180602216686 21.349383399454812 20.74746983395413 26.121966164374367 22 31.256707475059198 20.918228526517034 21.769640316950074 26.055423681473695 23 30.783404218158307 21.528225343736672 20.673782333909024 27.014588104196 24 29.15953668533272 23.83072516150265 20.0798076763466 26.929930476818026 25 31.58234704430849 19.989809329082888 22.685429433573354 25.742414193035266 26 30.568620672483238 21.58372552741413 20.81985823997298 27.027795560129647 27 31.215425153780256 24.536638420994514 18.915891600707575 25.33204482451766 28 31.197021321741563 23.909609037652796 18.71222252614607 26.18114711445957 29 32.57673134952053 21.550382114073447 19.516217384620603 26.35666915178542 30 31.028066926437358 22.038047577153556 19.545519172101812 27.388366324307277 31 31.04228478883587 21.698623176847835 19.8219375121339 27.43715452218239 32 31.474738755799912 23.597465611898546 19.11811723746212 25.80967839483942 33 31.17269939469435 23.679308535552956 18.278325121375076 26.869666948377613 34 30.051436906250878 25.18871145028692 18.670146314073303 26.089705329388902 35 30.91879868445078 24.249610813081297 19.532600403729557 25.29899009873836 36 32.29143586697566 23.593496157929415 20.046608606786613 24.06845936830831 37 32.9536851328071 24.854916457428327 18.56311540068751 23.62828300907706 38 30.18517141906536 25.924431700492427 20.978780742518843 22.911616137923367 39 31.48202811672504 25.972786867025455 20.160640193536143 22.38454482271336 40 32.41420025245727 26.197602305458865 17.708455875188818 23.679741566895043 41 31.971209189502453 26.548285520658844 17.2243990066261 24.256106283212603 42 33.32262783626508 25.754827758175093 17.484795187000977 23.437749218558857 43 32.127028300763364 24.723274929433934 18.470951896713363 24.67874487308934 44 32.270866878226535 25.410856528777458 19.068318633122132 23.249957959873875 45 29.408096675690558 25.936123546728773 18.289511764378986 26.366268013201683 46 30.07135634798687 24.027970937823195 20.404292495350326 25.496380218839604 47 30.73988456827858 23.918125320713838 20.775328183628382 24.5666619273792 48 30.846410278431936 23.20001501175319 20.7469646307217 25.206610079093174 49 29.45659618600428 22.829917558049655 20.76103814933952 26.952448106606543 50 30.202131813297093 23.307118097029335 19.777696143350695 26.71305394632288 51 28.253562945796745 24.985547578957853 21.172129236760608 25.58876023848479 52 28.112972103399226 25.617628994623914 21.66600148241063 24.603397419566235 53 29.196055661848714 25.282679251519756 20.659275783949116 24.861989302682414 54 28.206218185728588 24.974288764063594 20.33782218434 26.48167086586782 55 28.269729449234653 26.054701962570213 20.136246094598583 25.53932249359655 56 29.498239366734964 24.451836449835845 20.35976243900573 25.690161744423456 57 29.394095328963083 24.216916946753745 19.917204407393 26.471783316890168 58 26.864037540930486 23.939993403489222 22.053853221139725 27.142115834440574 59 29.50762171248018 24.61075895238171 20.261319980571326 25.620299354566782 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 5.0 10 10.0 11 39.0 12 68.0 13 122.5 14 344.5 15 512.0 16 809.0 17 1106.0 18 1267.0 19 1408.5 20 1389.0 21 1281.0 22 1173.0 23 1404.0 24 1635.0 25 1979.0 26 3225.0 27 4127.0 28 5009.5 29 5892.0 30 6962.5 31 8998.0 32 9963.0 33 10929.5 34 11896.0 35 12499.5 36 14339.5 37 15576.0 38 16040.5 39 16505.0 40 16698.0 41 16891.0 42 15890.5 43 16635.5 44 18381.0 45 20758.5 46 23136.0 47 25956.5 48 30631.0 49 32485.0 50 34662.0 51 36839.0 52 36953.0 53 43051.0 54 49035.0 55 55358.5 56 61682.0 57 63184.5 58 77352.0 59 90017.0 60 95653.0 61 101289.0 62 111063.5 63 120838.0 64 115615.0 65 105751.5 66 101111.0 67 93671.0 68 86231.0 69 80720.5 70 67135.5 71 59061.0 72 50040.5 73 41020.0 74 40012.0 75 35191.0 76 31378.0 77 26895.0 78 22412.0 79 17402.5 80 12393.0 81 9398.0 82 5387.5 83 4372.0 84 3219.0 85 2066.0 86 1678.0 87 1064.5 88 839.0 89 751.5 90 664.0 91 528.0 92 302.0 93 212.0 94 167.5 95 123.0 96 100.5 97 39.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 52 0.0 53 0.0 54 0.0 55 0.0 56 0.0 57 0.0 58 0.0 59 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 59 1385581.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 32.96159835994835 #Duplication Level Percentage of deduplicated Percentage of total 1 86.94183131099335 28.65741724351344 2 5.635915106651076 3.7153754027239647 3 2.215324724064204 2.1906193137440306 4 1.1438262803729888 1.508093697888325 5 0.736239778489697 1.2133819937597365 6 0.4790757643050641 0.9474661756205282 7 0.3199671897271096 0.7382640997302463 8 0.23273567753123164 0.6137071941451929 9 0.17739022601625568 0.5262358844635452 >10 1.3150156287002694 8.865986959171728 >50 0.24927280956149664 5.939167979384238 >100 0.5127965127023758 35.881698082745096 >500 0.03715290655424258 7.744007566237087 >1k 0.0034560843306272173 1.4585784068728551 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source TTCGCGTGGCGGATTTGCCACTGTTGGCTGGGCGCAGTGGCTCACACCTGTAATCCCAG 1697 0.12247569792022263 No Hit TGCGCGTGGCGGGAGCTTCTGTCAACTGTGTTGCGCCAATGGTGGAGAAGAAACCCGCC 1601 0.1155471964468335 No Hit GTTACGTGGCGGGGCATTACCATTGTTGCTATCACCCTTAGTCTTCTGGAAAGGTTGAA 1591 0.11482547754335547 No Hit GTCGCGTGGCGGGCATGCCGACGGGCGCTGACCCCCCTTCCCGGGGGGGGATGCGTGCA 1495 0.10789697606996632 No Hit GCTGCGTGGCGGGACGCAGAGTGGTACGTGGCGGGGTCTCGCAACCCAAGATGGCGGAT 1412 0.10190670917109862 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 0.0 0.0 10 0.0 0.0 0.0 0.0 0.0 11 0.006206782569911106 0.0 0.0 0.0 0.0 12 0.021579395213993262 0.0 0.0 0.0 0.0 13 0.024610614608601013 0.0 7.217189034780355E-5 0.0 0.0 14 0.0466230411646811 0.0 7.217189034780355E-5 0.0 0.0 15 0.07166668711536893 0.0 7.217189034780355E-5 0.0 0.0 16 0.09086440994788468 0.0 7.217189034780355E-5 0.0 0.0 17 0.10602050692092342 0.0 7.217189034780355E-5 0.0 0.0 18 0.1295485431743074 0.0 7.217189034780355E-5 0.0 0.0 19 0.15184965729177868 0.0 7.217189034780355E-5 0.0 0.0 20 0.17790370970733577 0.0 7.217189034780355E-5 0.0 0.0 21 0.20330821510976263 0.0 7.217189034780355E-5 0.0 0.0 22 0.22763014215697241 0.0 7.217189034780355E-5 0.0 0.0 23 0.2505086313972261 0.0 7.217189034780355E-5 0.0 0.0 24 0.2743253552120013 0.0 7.217189034780355E-5 0.0 0.0 25 0.30131764220207985 0.0 7.217189034780355E-5 0.0 0.0 26 0.3283099291921584 0.0 7.217189034780355E-5 0.0 0.0 27 0.36389067113362555 0.0 7.217189034780355E-5 0.0 0.0 28 0.39413069318935523 0.0 7.217189034780355E-5 0.0 0.0 29 0.42718541896864926 0.0 7.217189034780355E-5 0.0 0.0 30 0.47330325690089575 0.0 7.217189034780355E-5 0.0 0.0 31 0.5065744983512331 0.0 7.217189034780355E-5 0.0 0.0 32 0.5321233475343556 0.0 7.217189034780355E-5 0.0 0.0 33 0.5544966335421747 0.0 7.217189034780355E-5 0.0 0.0 34 0.5756429974140812 0.0 7.217189034780355E-5 0.0 0.0 35 0.592964251097554 0.0 7.217189034780355E-5 0.0 0.0 36 0.6119454582590264 0.0 7.217189034780355E-5 0.0 0.0 37 0.6314318686529333 0.0 7.217189034780355E-5 0.0 0.0 38 0.6546712173449261 0.0 7.217189034780355E-5 0.0 0.0 39 0.6792096600631793 0.0 7.217189034780355E-5 0.0 0.0 40 0.7023046649744764 0.0 7.217189034780355E-5 0.0 0.0 41 0.7257605293375126 0.0 7.217189034780355E-5 0.0 0.0 42 0.7440921894858546 0.0 7.217189034780355E-5 0.0 0.0 43 0.7630012247569792 0.0 7.217189034780355E-5 0.0 0.0 44 0.7809720254535822 0.0 7.217189034780355E-5 0.0 7.217189034780355E-5 45 0.7959116067555776 0.0 7.217189034780355E-5 0.0 7.217189034780355E-5 46 0.8127998290969637 0.0 7.217189034780355E-5 0.0 7.217189034780355E-5 47 0.8295437076576541 0.0 7.217189034780355E-5 0.0 7.217189034780355E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GATAAGT 75 0.0 53.000004 44 TGCGTAT 75 0.0 53.000004 21 AACCGTT 20 3.13847E-4 53.0 29 GATAATT 40 1.6007107E-9 53.0 19 CATATAC 40 1.6007107E-9 53.0 47 CATATAA 50 3.6379788E-12 53.0 32 ATTAGCG 35 3.342757E-8 53.0 47 ATAGGTG 40 1.6007107E-9 53.0 49 ACTGATA 30 7.011531E-7 53.0 17 AGATAAT 45 7.6397555E-11 53.0 14 CCGATAA 40 1.6007107E-9 53.0 48 CTATCAG 40 1.6007107E-9 53.0 33 TCCGAAT 55 0.0 53.0 52 TTATGTA 30 7.011531E-7 53.0 23 ATAATAT 15 0.006696556 53.0 45 GACGTAA 20 3.13847E-4 53.0 13 TATGGAC 40 1.6007107E-9 53.0 14 ATTACAT 30 7.011531E-7 53.0 48 CCAATTA 15 0.006696556 53.0 34 ATGCTTA 15 0.006696556 53.0 14 >>END_MODULE