##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1527942_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4248481 Sequences flagged as poor quality 0 Sequence length 52 %GC 58 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.64461156822874 31.0 31.0 34.0 30.0 34.0 2 32.26550289385783 34.0 31.0 34.0 30.0 34.0 3 32.50206932783741 34.0 31.0 34.0 31.0 34.0 4 36.013018770708875 37.0 35.0 37.0 35.0 37.0 5 35.96722240254811 37.0 35.0 37.0 35.0 37.0 6 35.81273236246084 37.0 35.0 37.0 35.0 37.0 7 35.93700171896732 37.0 35.0 37.0 35.0 37.0 8 35.679996685874315 37.0 35.0 37.0 33.0 37.0 9 37.74321622245692 39.0 38.0 39.0 35.0 39.0 10 37.663985551541835 39.0 37.0 39.0 35.0 39.0 11 38.18351523756373 39.0 39.0 39.0 37.0 39.0 12 38.16239380616272 39.0 39.0 39.0 37.0 39.0 13 38.10656655873005 39.0 39.0 39.0 37.0 39.0 14 38.71009685579387 40.0 39.0 40.0 36.0 40.0 15 38.13131681652807 40.0 38.0 40.0 34.0 40.0 16 37.6215120180601 40.0 37.0 40.0 33.0 40.0 17 37.62703869924333 40.0 37.0 40.0 33.0 40.0 18 37.669151868632575 40.0 37.0 40.0 33.0 40.0 19 37.775379482690404 40.0 37.0 40.0 33.0 40.0 20 37.76288207479332 40.0 37.0 40.0 33.0 40.0 21 37.61168897777817 40.0 37.0 40.0 33.0 40.0 22 37.62763867838882 40.0 37.0 40.0 33.0 40.0 23 37.53077040947105 40.0 37.0 40.0 33.0 40.0 24 37.515736565610155 40.0 37.0 40.0 33.0 40.0 25 37.63209580082858 40.0 37.0 40.0 33.0 40.0 26 37.622720685346124 40.0 37.0 40.0 33.0 40.0 27 37.57033372633654 40.0 37.0 40.0 33.0 40.0 28 37.496259957382414 40.0 37.0 40.0 33.0 40.0 29 37.47436366080018 40.0 37.0 40.0 33.0 40.0 30 37.40347832554741 40.0 36.0 40.0 33.0 40.0 31 37.33801563429376 40.0 36.0 40.0 33.0 40.0 32 37.2140703936301 40.0 36.0 40.0 33.0 40.0 33 37.096868504296005 39.0 35.0 40.0 32.0 40.0 34 36.95264566323822 39.0 35.0 40.0 32.0 40.0 35 36.84102788737904 39.0 35.0 40.0 32.0 40.0 36 36.657265973414965 39.0 35.0 40.0 32.0 40.0 37 36.4759169218363 38.0 35.0 40.0 31.0 40.0 38 36.259317859724455 38.0 35.0 40.0 31.0 40.0 39 36.08849939543098 38.0 35.0 40.0 31.0 40.0 40 35.79463036318157 37.0 35.0 40.0 30.0 40.0 41 35.60476414982202 37.0 35.0 40.0 30.0 40.0 42 35.37229000200307 37.0 35.0 40.0 30.0 40.0 43 35.14724580385319 36.0 34.0 40.0 29.0 40.0 44 34.92489503895628 36.0 34.0 40.0 29.0 40.0 45 34.727837314089435 35.0 34.0 39.0 28.0 40.0 46 34.49447014121047 35.0 34.0 39.0 28.0 40.0 47 34.29098235345762 35.0 34.0 39.0 27.0 40.0 48 34.08742371685315 35.0 33.0 39.0 27.0 40.0 49 33.92318148533558 35.0 33.0 38.0 27.0 40.0 50 33.71593706079891 35.0 33.0 37.0 26.0 40.0 51 33.518909464347374 35.0 33.0 37.0 26.0 40.0 52 32.854543070805775 35.0 33.0 36.0 24.0 39.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 2.0 12 5.0 13 8.0 14 16.0 15 25.0 16 67.0 17 191.0 18 407.0 19 965.0 20 1888.0 21 3668.0 22 6236.0 23 9874.0 24 14798.0 25 21169.0 26 29355.0 27 39369.0 28 52342.0 29 67098.0 30 84669.0 31 104548.0 32 128420.0 33 163335.0 34 230190.0 35 381426.0 36 516547.0 37 921737.0 38 1117927.0 39 352199.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 29.371368260797208 19.088610729340676 35.689908934510946 15.850112075351166 2 19.325518932531416 22.912000783338797 36.64203747174579 21.120442812384002 3 22.2415964670667 22.74707124734699 35.99679508982152 19.01453719576479 4 24.087715115119966 22.483118083851615 35.34915184980232 18.080014951226097 5 100.0 0.0 0.0 0.0 6 0.0 100.0 0.0 0.0 7 100.0 0.0 0.0 0.0 8 0.0 100.0 0.0 0.0 9 0.0 0.0 100.0 0.0 10 0.0 0.0 0.0 100.0 11 99.34884962413625 0.45519798723355476 0.16255221572133663 0.03340017290885849 12 99.07752912158487 0.5918821338732596 0.17441527924921874 0.156173465292654 13 96.09446293863618 2.3770848922238326 0.5637073579945396 0.9647448111454423 14 58.12074951023671 25.17061980505503 6.201204618780219 10.507426065928033 15 33.677307254051506 25.99110129008462 17.964608997898306 22.366982457965566 16 27.193813506521508 18.034186807002314 28.870412742813258 25.901586943662924 17 23.42008826213416 17.52506366393071 30.17483189874216 28.880016175192967 18 24.134884915337977 18.893646929337805 29.174898040028896 27.796570115295328 19 25.151012797279783 16.97903321210569 28.024769323435834 29.845184667178692 20 28.616321927766652 17.107290817588687 25.01489355842712 29.261493696217546 21 33.10536165749593 18.6114284140614 19.72163698037016 28.5615729480725 22 32.10639284958553 18.727163896931636 20.973637401226462 28.19280585225637 23 30.26695894367893 19.683176175202384 20.81838191108775 29.231482970030935 24 31.351064062661454 20.165254357969353 20.609954475493712 27.873727103875478 25 32.90696133512189 18.88183094145884 20.67197664294603 27.539231080473233 26 32.876220936377024 18.982054998009875 18.600624552634223 29.541099512978874 27 31.926469719412655 20.886406223777392 17.920969871349314 29.266154185460643 28 31.572484377357462 21.132588329805404 19.389023982924723 27.90590330991241 29 30.30603173228267 19.369063907782568 20.298243066168826 30.026661293765937 30 32.03241346730749 18.60003610702272 19.57770318379675 29.789847241873034 31 32.36914558403345 18.345450997662457 20.007739236682475 29.27766418162162 32 33.36368928094535 20.104056014373135 19.479621069271584 27.05263363540993 33 31.754926054747568 20.024921848538334 19.25389333269938 28.966258764014714 34 30.673833777295933 21.766579631637757 19.989120817534552 27.570465773531765 35 34.45753905925436 21.27814623626656 17.847649548156152 26.41666515632293 36 33.298089364175105 21.002753690083587 19.674019961487414 26.025136984253898 37 33.35987615338282 21.617090908491765 19.866300449501832 25.15673248862358 38 31.87654599373282 23.460997001045786 21.053477701795064 23.60897930342633 39 33.77875527747447 22.331204964786238 20.67701373738049 23.213026020358807 40 33.02269681799213 22.435571678442248 19.10930047704109 25.432431026524537 41 34.34860600765309 23.95875137490317 17.056237276334766 24.636405341108976 42 34.018535095249334 23.628139092536838 17.70352744898706 24.649798363226765 43 33.90192871287409 22.92878325217884 17.852027583505727 25.31726045144135 44 31.329903558471837 23.359572515447287 19.95550880420555 25.355015121875326 45 30.024613503037912 21.82114030873623 20.046458957919313 28.107787230306545 46 30.541645355128104 20.101231475437928 21.569403276135635 27.787719893298334 47 31.185404854111386 20.37829520715757 22.35109442645501 26.085205512276033 48 30.28609519496498 20.269009088189403 22.161332485657816 27.283563231187806 49 30.970480978966364 20.020449661890922 20.99569234274556 28.013377016397158 50 30.28722501053906 20.828503175605587 21.373733341398964 27.510538472456393 51 29.41161794062396 22.317364724003706 21.46105867014587 26.809958665226464 52 30.035676280534148 21.282218279898157 21.974677537689352 26.707427901878344 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 8.0 6 16.0 7 9.5 8 3.0 9 13.5 10 24.0 11 219.0 12 414.0 13 801.5 14 1719.5 15 2250.0 16 2374.5 17 2499.0 18 2593.5 19 2688.0 20 3273.5 21 3859.0 22 5269.5 23 6680.0 24 8473.0 25 10266.0 26 13473.0 27 16680.0 28 19496.5 29 22313.0 30 23297.0 31 24281.0 32 23314.0 33 22347.0 34 23903.5 35 25460.0 36 28122.0 37 30784.0 38 33208.5 39 37321.5 40 39010.0 41 42833.5 42 46657.0 43 56205.5 44 65754.0 45 70683.0 46 75612.0 47 92610.0 48 109608.0 49 125859.5 50 142111.0 51 169404.0 52 196697.0 53 225878.5 54 255060.0 55 296330.0 56 337600.0 57 362238.5 58 386877.0 59 404454.0 60 422031.0 61 433207.5 62 444384.0 63 417528.0 64 357387.0 65 324102.0 66 284858.5 67 245615.0 68 211240.0 69 176865.0 70 165664.0 71 154463.0 72 135697.5 73 116932.0 74 88950.0 75 60968.0 76 45139.5 77 29311.0 78 21693.0 79 14075.0 80 8992.5 81 3910.0 82 2575.5 83 1241.0 84 1279.0 85 1317.0 86 733.5 87 150.0 88 106.5 89 35.0 90 7.0 91 4.5 92 2.0 93 1.5 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 52 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 52 4248481.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 9.769817423227323 #Duplication Level Percentage of deduplicated Percentage of total 1 75.58825586448016 7.384834591361631 2 8.29307307936468 1.6204361972574903 3 3.755434103772563 1.1006971661645781 4 2.267861447681425 0.8862636914009412 5 1.418843047532254 0.6930918763302784 6 0.9538493009075459 0.5591360111483846 7 0.6617316359118807 0.4525498086222828 8 0.48534163884759346 0.37933593595447374 9 0.36966858325342283 0.3250435108940145 >10 2.4585513738014915 4.837181963703715 >50 0.6666860129293055 4.891663569864132 >100 2.8881143810441716 64.14426770716516 >500 0.18190360444468714 11.263690777414451 >1k 0.010443064073593522 1.3101905788881556 >5k 2.4286195519984932E-4 0.15161661383029962 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CATGGAGATCGGGGAGTGCTGGAGATCGGGGGGCGTGGTGGCACAAGCCTAA 6390 0.15040669829993356 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.5787951034734532 0.0 0.0 0.0 0.0 7 0.5787951034734532 0.0 0.0 0.0 0.0 8 0.5787951034734532 0.0 0.0 0.0 0.0 9 0.5787951034734532 0.0 0.0 0.0 0.0 10 0.5787951034734532 0.0 0.0 0.0 0.0 11 0.5825376175626065 0.0 0.0 0.0 0.0 12 0.5926588820804424 0.0 0.0 0.0 0.0 13 0.6087116783622193 0.0 0.0 0.0 0.0 14 0.6418529352020169 0.0 0.0 0.0 0.0 15 0.6753707972331758 0.0 0.0 0.0 0.0 16 0.6903408535897889 0.0 0.0 2.35378244600835E-5 0.0 17 0.7084649784240532 0.0 0.0 2.35378244600835E-5 0.0 18 0.7378166455257773 0.0 0.0 2.35378244600835E-5 0.0 19 0.7621782938419638 0.0 0.0 2.35378244600835E-5 0.0 20 0.7888701867796984 0.0 0.0 2.35378244600835E-5 0.0 21 0.815515004068513 0.0 0.0 2.35378244600835E-5 0.0 22 0.8447254442234766 0.0 0.0 2.35378244600835E-5 0.0 23 0.8831627115667929 0.0 0.0 2.35378244600835E-5 0.0 24 0.9170571787893131 0.0 0.0 2.35378244600835E-5 0.0 25 0.953634958000283 0.0 0.0 2.35378244600835E-5 0.0 26 0.9856699370904566 0.0 0.0 2.35378244600835E-5 0.0 27 1.0141742425116176 0.0 0.0 2.35378244600835E-5 0.0 28 1.0484453149254993 0.0 0.0 2.35378244600835E-5 0.0 29 1.084128656806986 0.0 0.0 2.35378244600835E-5 0.0 30 1.125931833048094 0.0 0.0 2.35378244600835E-5 0.0 31 1.1684176061985447 0.0 0.0 2.35378244600835E-5 0.0 32 1.214175136948947 0.0 0.0 2.35378244600835E-5 0.0 33 1.246492569932642 0.0 0.0 2.35378244600835E-5 0.0 34 1.2894490995722943 0.0 0.0 2.35378244600835E-5 0.0 35 1.3180475562912957 0.0 0.0 2.35378244600835E-5 0.0 36 1.3546253355022655 0.0 0.0 2.35378244600835E-5 0.0 37 1.3887081053204664 0.0 0.0 2.35378244600835E-5 0.0 38 1.420484168341579 0.0 0.0 2.35378244600835E-5 0.0 39 1.4511068779641476 0.0 0.0 2.35378244600835E-5 0.0 40 1.4863900768298128 0.0 0.0 2.35378244600835E-5 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCGCATA 35 1.0204349E-7 46.000004 16 ACTAGGT 35 1.0204349E-7 46.000004 28 ACGATAA 35 1.0204349E-7 46.000004 18 TAACACG 35 1.0204349E-7 46.000004 33 TAGATAA 35 1.0204349E-7 46.000004 31 GCGTAAC 70 0.0 46.000004 31 AGGTATA 25 3.4187236E-5 46.0 15 AACCGAT 20 6.313387E-4 46.0 28 ATTAGTA 45 3.110472E-10 46.0 33 CGTATAG 25 3.4187236E-5 46.0 46 CGTATAC 30 1.8625979E-6 46.0 29 CCGATAT 20 6.313387E-4 46.0 45 ATAATAC 30 1.8625979E-6 46.0 16 ACTCTAT 40 5.6170393E-9 46.0 46 ACCGATA 20 6.313387E-4 46.0 44 TACGGTA 50 1.6370905E-11 46.0 33 CGACAAT 55 1.8189894E-12 46.0 16 CCTAACG 60 0.0 46.0 32 AATATCG 20 6.313387E-4 46.0 30 CGTTAAT 40 5.6170393E-9 46.0 18 >>END_MODULE