##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1527939_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 3271743 Sequences flagged as poor quality 0 Sequence length 52 %GC 50 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.72489862437239 33.0 31.0 34.0 30.0 34.0 2 32.331083156592676 34.0 31.0 34.0 30.0 34.0 3 32.49093923330775 34.0 31.0 34.0 30.0 34.0 4 35.99297255316203 37.0 35.0 37.0 35.0 37.0 5 36.0605139217842 37.0 35.0 37.0 35.0 37.0 6 36.02493624957706 37.0 35.0 37.0 35.0 37.0 7 36.11430665550442 37.0 36.0 37.0 35.0 37.0 8 36.10136034523494 37.0 36.0 37.0 35.0 37.0 9 37.672614260961204 39.0 38.0 39.0 35.0 39.0 10 37.687338216968755 39.0 38.0 39.0 35.0 39.0 11 38.06356397797749 39.0 38.0 39.0 37.0 39.0 12 38.05358153131221 39.0 38.0 39.0 37.0 39.0 13 37.97498367078343 39.0 38.0 39.0 35.0 39.0 14 38.35086649532069 40.0 38.0 40.0 35.0 40.0 15 37.343859221216334 39.0 36.0 40.0 33.0 40.0 16 37.253420882997226 39.0 36.0 40.0 33.0 40.0 17 37.2867835279238 40.0 36.0 40.0 33.0 40.0 18 37.413423976149716 40.0 36.0 40.0 33.0 40.0 19 37.52252728897105 40.0 36.0 40.0 33.0 40.0 20 37.49269334418993 40.0 36.0 40.0 33.0 40.0 21 37.34739739643364 40.0 36.0 40.0 33.0 40.0 22 37.40565961323979 40.0 36.0 40.0 33.0 40.0 23 37.333662210020776 40.0 36.0 40.0 33.0 40.0 24 37.39463827079327 40.0 36.0 40.0 33.0 40.0 25 37.51615667856552 40.0 36.0 40.0 33.0 40.0 26 37.494710006256604 40.0 36.0 40.0 33.0 40.0 27 37.489857852526924 40.0 36.0 40.0 33.0 40.0 28 37.41776447599949 40.0 36.0 40.0 33.0 40.0 29 37.4151255156655 40.0 35.0 40.0 33.0 40.0 30 37.364879515292 40.0 35.0 40.0 33.0 40.0 31 37.30592959165802 40.0 35.0 40.0 33.0 40.0 32 37.262055424279964 40.0 35.0 40.0 33.0 40.0 33 37.201924784434475 40.0 35.0 40.0 33.0 40.0 34 37.117554771264125 40.0 35.0 40.0 33.0 40.0 35 37.02886045756039 40.0 35.0 40.0 33.0 40.0 36 36.90714337892677 39.0 35.0 40.0 32.0 40.0 37 36.80624517268013 39.0 35.0 40.0 32.0 40.0 38 36.63532710240383 39.0 35.0 40.0 32.0 40.0 39 36.49576204487944 39.0 35.0 40.0 31.0 40.0 40 36.32908391643231 39.0 35.0 40.0 31.0 40.0 41 36.15157547521306 38.0 35.0 40.0 31.0 40.0 42 35.95477303687973 38.0 35.0 40.0 31.0 40.0 43 35.74843928756018 38.0 35.0 40.0 30.0 40.0 44 35.56069073885082 38.0 35.0 40.0 30.0 40.0 45 35.35581890142349 37.0 35.0 40.0 29.0 40.0 46 35.16363204567107 37.0 35.0 40.0 28.0 40.0 47 34.97680838623327 37.0 34.0 40.0 28.0 40.0 48 34.787893181096436 36.0 34.0 40.0 27.0 40.0 49 34.59875149117764 36.0 34.0 40.0 27.0 40.0 50 34.386008008575246 36.0 34.0 40.0 26.0 40.0 51 34.17193190296426 35.0 34.0 39.0 26.0 40.0 52 33.519455837454224 35.0 33.0 39.0 23.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 3.0 13 4.0 14 10.0 15 20.0 16 44.0 17 184.0 18 449.0 19 1007.0 20 1803.0 21 3233.0 22 5297.0 23 8106.0 24 11699.0 25 17170.0 26 23406.0 27 31287.0 28 40701.0 29 52448.0 30 65309.0 31 77495.0 32 93953.0 33 120209.0 34 189923.0 35 343277.0 36 263181.0 37 504110.0 38 948281.0 39 469133.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 28.707236479148886 20.875417170602947 36.16121437411191 14.256131976136269 2 27.553661763775455 21.484939373294296 33.52708327029354 17.434315592636707 3 26.702678052646554 21.915168764783786 32.41727727391791 18.96487590865175 4 19.952881384631986 23.763113423028642 34.326901593432005 21.95710359890737 5 0.0 100.0 0.0 0.0 6 0.0 0.0 100.0 0.0 7 0.0 100.0 0.0 0.0 8 0.0 0.0 0.0 100.0 9 0.0 100.0 0.0 0.0 10 100.0 0.0 0.0 0.0 11 99.17050330664725 0.7071460074950875 0.08460322219685348 0.0377474636608071 12 98.79281471680386 0.9136720090789527 0.14133139430572633 0.15218187981146442 13 93.69877157221701 3.1910208106199054 1.5652818696334034 1.5449257475296807 14 41.221911378736046 34.936851702594005 9.681903499144035 14.159333419525922 15 28.91394586922017 31.051797161329603 20.832351440806935 19.201905528643294 16 32.23483629368199 20.524656123662524 24.37330805017387 22.867199532481617 17 22.586951358954536 21.215633379516667 27.414041995352324 28.783373266176472 18 22.55060987369729 25.341263051529417 28.84028482677276 23.26784224800053 19 27.642452356435086 23.384721843983467 26.751948426266974 22.22087737331447 20 26.59157519401738 24.51311120708442 26.674955826298092 22.22035777260011 21 30.47476528565966 23.401776973313613 22.24242552058643 23.8810322204403 22 28.076838553639448 26.068765181128224 23.80648480030369 22.04791146492863 23 24.401977783707338 25.232269160505577 25.579026225470642 24.78672683031644 24 25.198097772349477 29.71623993693881 21.600688073604804 23.484974217106906 25 26.708515919496122 23.594671097332522 25.520678121722884 24.17613486144847 26 26.941877769739246 25.84350298907952 21.59558376070492 25.61903548047631 27 28.28752136093819 27.598011212983415 20.356886222420282 23.757581203658113 28 28.266431684884786 27.664061633202852 20.332189906114266 23.7373167757981 29 29.291237117340817 26.01536856654083 19.27941772932654 25.413976586791808 30 29.685155588320967 26.115406986428948 19.703075700016782 24.49636172523331 31 26.381350857937193 26.824386878798244 19.558840654660223 27.235421608604344 32 26.2885257185543 29.796472400185465 19.621620646853984 24.293381234406247 33 28.18207298067116 29.901615132973465 19.67040198450795 22.245909901847423 34 26.539492863589835 30.099063404429995 20.286648431738065 23.074795300242105 35 27.47321534729348 29.964700772646264 19.353842890471533 23.20824098958873 36 26.816806821318178 29.618524437891363 22.022481594672932 21.542187146117527 37 26.320588139105055 30.104717882792137 21.31784189650593 22.256852081596872 38 26.001461606244746 30.734626772335112 22.33323338660769 20.930678234812454 39 26.13533520206202 31.904370239349483 21.099548466979222 20.860746091609272 40 25.58119632257179 32.81999839229426 19.851009079869662 21.74779620526429 41 26.533349349261236 32.25216650574327 19.97714979446735 21.237334350528144 42 25.890603265598795 31.923045300318513 20.76379471125941 21.422556722823277 43 26.699132541889753 31.998754180875455 18.820121262580834 22.48199201465396 44 25.31613882875275 31.13126550587867 19.57983863646992 23.972757028898663 45 25.671117810903855 32.47000146405142 19.626021970552088 22.232858754492636 46 27.505430591583753 29.204800010269754 19.364051516271296 23.925717881875197 47 27.675156636691817 28.53170313193915 20.9538768784712 22.839263352897827 48 28.010818698167917 29.007046091334193 19.999309236697382 22.98282597380051 49 26.949060485496567 29.73301998353783 20.354196524604777 22.96372300636083 50 26.005068246497352 30.810519041379475 20.030974315525395 23.153438396597778 51 24.911553260754282 31.278893238252515 21.093343823154814 22.716209677838386 52 25.46477519780741 30.23327321247421 21.31441864474074 22.987532944977644 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.5 4 1.0 5 23.5 6 46.0 7 175.0 8 304.0 9 907.0 10 1510.0 11 2553.0 12 3596.0 13 4353.5 14 5056.0 15 5001.0 16 5048.5 17 5096.0 18 6096.0 19 7096.0 20 8854.0 21 10612.0 22 14693.0 23 18774.0 24 25805.5 25 32837.0 26 42099.5 27 51362.0 28 57866.0 29 64370.0 30 66862.0 31 69354.0 32 69187.0 33 69020.0 34 70977.5 35 72935.0 36 76089.5 37 79244.0 38 82935.0 39 90670.5 40 94715.0 41 106721.5 42 118728.0 43 129003.5 44 139279.0 45 150473.0 46 161667.0 47 175463.5 48 189260.0 49 200466.0 50 211672.0 51 215453.5 52 219235.0 53 229870.0 54 240505.0 55 237354.0 56 234203.0 57 242533.5 58 250864.0 59 235656.0 60 220448.0 61 204117.5 62 187787.0 63 160582.5 64 113712.5 65 94047.0 66 80696.0 67 67345.0 68 59085.0 69 50825.0 70 41388.5 71 31952.0 72 28816.5 73 25681.0 74 17212.5 75 8744.0 76 7037.5 77 5331.0 78 3442.0 79 1553.0 80 986.5 81 420.0 82 647.0 83 874.0 84 590.0 85 306.0 86 157.5 87 9.0 88 13.5 89 10.0 90 2.0 91 1.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 52 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 52 3271743.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 13.26559823503725 #Duplication Level Percentage of deduplicated Percentage of total 1 74.70756285530419 9.910405139572577 2 7.708713486863358 2.0452139205148483 3 3.5857324291426176 1.4270065735005044 4 2.323902098799509 1.233118063209365 5 1.6420957924209056 1.089169152285043 6 1.158401868094836 0.9220136266117624 7 0.9048648822276918 0.8402501789238801 8 0.7088384465657538 0.7522532836551369 9 0.5781801381880054 0.6902914878612358 >10 3.909194108650956 9.9190677641912 >50 0.7710392430636228 7.5885754428408445 >100 1.8924050055742856 53.67111501384758 >500 0.1004466176067341 8.47385926308865 >1k 0.008623027497561858 1.4376610898973643 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.050279010301236986 0.0 0.0 0.0 0.0 10 0.050279010301236986 0.0 0.0 0.0 0.0 11 0.06171022601714132 0.0 0.0 0.0 0.0 12 0.07870422585148039 0.0 0.0 0.0 0.0 13 0.08793477971833362 0.0 0.0 0.0 0.0 14 0.15676659199698753 0.0 0.0 0.0 0.0 15 0.20946021738260004 0.0 0.0 0.0 0.0 16 0.2408807782273852 0.0 0.0 0.0 0.0 17 0.2647212815921055 0.0 0.0 0.0 0.0 18 0.31338036025445765 0.0 0.0 0.0 0.0 19 0.3435783311831033 0.0 0.0 0.0 0.0 20 0.37781084883500937 0.0 0.0 0.0 0.0 21 0.4124407082096607 0.0 0.0 0.0 0.0 22 0.44982139489562595 0.0 0.0 0.0 0.0 23 0.4875077290606261 0.0 0.0 0.0 0.0 24 0.533140897680533 0.0 0.0 0.0 0.0 25 0.5766039691992922 0.0 0.0 0.0 0.0 26 0.627433144962792 0.0 0.0 0.0 0.0 27 0.6788736156843616 0.0 0.0 0.0 0.0 28 0.7317200648094915 0.0 0.0 0.0 0.0 29 0.7834661830100959 0.0 0.0 0.0 0.0 30 0.8414169450351082 0.0 0.0 0.0 0.0 31 0.9026381350857937 0.0 0.0 0.0 0.0 32 0.9659988574897234 0.0 0.0 0.0 0.0 33 1.0222379936321404 0.0 0.0 0.0 0.0 34 1.077376798850032 0.0 0.0 0.0 0.0 35 1.1248132875962447 0.0 0.0 0.0 0.0 36 1.1786989381500932 0.0 0.0 0.0 0.0 37 1.2355188045026764 0.0 0.0 0.0 0.0 38 1.2960675700994853 0.0 0.0 0.0 0.0 39 1.366335925529603 0.0 0.0 0.0 0.0 40 1.4492275218438613 0.0 0.0 0.0 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ACCGGTA 35 1.0203439E-7 46.000004 46 CATAACG 35 1.0203439E-7 46.000004 38 TTACGAA 35 1.0203439E-7 46.000004 44 GCGCTAA 55 1.8189894E-12 46.000004 34 CGATCTA 35 1.0203439E-7 46.000004 36 CTAGACG 20 6.313172E-4 46.0 46 TCGTTTA 30 1.8624651E-6 46.0 41 CGAAATT 25 3.4185497E-5 46.0 27 GACGTAT 30 1.8624651E-6 46.0 13 TGACGTA 45 3.110472E-10 46.0 29 TAACGGC 25 3.4185497E-5 46.0 42 CGCGAAT 45 3.110472E-10 46.0 35 TTATCCG 20 6.313172E-4 46.0 46 CGTTAGT 20 6.313172E-4 46.0 36 CGAGGTA 20 6.313172E-4 46.0 19 CATACGC 20 6.313172E-4 46.0 23 GATTGCG 225 0.0 46.0 13 TCGAGTA 25 3.4185497E-5 46.0 42 ACCGTAC 20 6.313172E-4 46.0 31 CGGTATT 20 6.313172E-4 46.0 28 >>END_MODULE