##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1527938_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 3241135 Sequences flagged as poor quality 0 Sequence length 52 %GC 50 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.662523467859252 33.0 31.0 34.0 30.0 34.0 2 32.170273067922196 34.0 31.0 34.0 30.0 34.0 3 32.422651632838495 34.0 31.0 34.0 30.0 34.0 4 35.9627192326145 37.0 35.0 37.0 35.0 37.0 5 36.04576359824568 37.0 35.0 37.0 35.0 37.0 6 36.01319815435025 37.0 35.0 37.0 35.0 37.0 7 36.11784174371015 37.0 36.0 37.0 35.0 37.0 8 36.05914841560133 37.0 36.0 37.0 35.0 37.0 9 37.66498371712378 39.0 38.0 39.0 35.0 39.0 10 37.67607088257663 39.0 38.0 39.0 35.0 39.0 11 38.04777925017008 39.0 38.0 39.0 37.0 39.0 12 38.029249321611104 39.0 38.0 39.0 37.0 39.0 13 37.978543627463836 39.0 38.0 39.0 35.0 39.0 14 38.3815530670583 40.0 38.0 40.0 35.0 40.0 15 37.379848725832154 39.0 36.0 40.0 33.0 40.0 16 37.29075370202105 39.0 36.0 40.0 33.0 40.0 17 37.33799610321693 40.0 36.0 40.0 33.0 40.0 18 37.48616240915605 40.0 36.0 40.0 33.0 40.0 19 37.58703756554417 40.0 36.0 40.0 33.0 40.0 20 37.536704271806016 40.0 36.0 40.0 33.0 40.0 21 37.58479174733542 40.0 36.0 40.0 33.0 40.0 22 37.53642844250548 40.0 36.0 40.0 33.0 40.0 23 37.44364489600094 40.0 36.0 40.0 33.0 40.0 24 37.49741093783505 40.0 36.0 40.0 33.0 40.0 25 37.4684957584303 40.0 36.0 40.0 33.0 40.0 26 37.42022717350558 40.0 36.0 40.0 33.0 40.0 27 37.45731510720781 40.0 36.0 40.0 33.0 40.0 28 37.24475623508432 40.0 36.0 40.0 33.0 40.0 29 37.3381840003579 40.0 35.0 40.0 33.0 40.0 30 37.348492117730366 40.0 35.0 40.0 33.0 40.0 31 37.33067521099861 40.0 35.0 40.0 33.0 40.0 32 37.28915025137799 40.0 35.0 40.0 33.0 40.0 33 37.2197893639111 40.0 35.0 40.0 33.0 40.0 34 37.155965734225816 40.0 35.0 40.0 33.0 40.0 35 37.00673251808394 40.0 35.0 40.0 33.0 40.0 36 36.51496435662199 39.0 35.0 40.0 31.0 40.0 37 36.63625952019894 39.0 35.0 40.0 31.0 40.0 38 36.583432038468004 39.0 35.0 40.0 31.0 40.0 39 36.47864158697493 39.0 35.0 40.0 31.0 40.0 40 36.31946956853078 39.0 35.0 40.0 31.0 40.0 41 36.17500782904754 38.0 35.0 40.0 31.0 40.0 42 35.82502826941796 38.0 35.0 40.0 30.0 40.0 43 35.64423851521149 38.0 35.0 40.0 30.0 40.0 44 35.46595652448911 38.0 35.0 40.0 29.0 40.0 45 35.02056933759316 37.0 34.0 40.0 27.0 40.0 46 34.98833340789569 37.0 34.0 40.0 27.0 40.0 47 34.88644811154117 37.0 34.0 40.0 27.0 40.0 48 34.693781653649104 36.0 34.0 40.0 26.0 40.0 49 34.50852093479599 36.0 34.0 40.0 26.0 40.0 50 34.23452278291401 35.0 34.0 40.0 25.0 40.0 51 34.111872847011924 35.0 34.0 39.0 24.0 40.0 52 33.60173272634432 35.0 33.0 39.0 23.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 3.0 12 5.0 13 9.0 14 13.0 15 27.0 16 61.0 17 164.0 18 391.0 19 956.0 20 1869.0 21 3171.0 22 5145.0 23 8091.0 24 11911.0 25 17022.0 26 23669.0 27 31318.0 28 41192.0 29 52968.0 30 65500.0 31 78159.0 32 94276.0 33 122188.0 34 193322.0 35 336945.0 36 267277.0 37 506716.0 38 915199.0 39 463567.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 28.733391234860626 20.898419843665877 36.13552042725773 14.232668494215762 2 27.62402676840058 21.524527673176216 33.38719306662635 17.464252491796856 3 26.724434495940464 21.91368147269398 32.43983974749586 18.922044283869692 4 19.88266456040862 23.768618092118963 34.34907833212748 21.999639015344933 5 0.0 100.0 0.0 0.0 6 0.0 0.0 100.0 0.0 7 0.0 100.0 0.0 0.0 8 0.0 0.0 0.0 100.0 9 0.0 100.0 0.0 0.0 10 100.0 0.0 0.0 0.0 11 99.16078781044295 0.7124664662224808 0.08802471973552475 0.038721003599047864 12 98.79964888842952 0.9054544164312809 0.14291289933927467 0.1519837957999281 13 93.66120201719458 3.205358616657436 1.5777189163672605 1.5557204497807096 14 41.197327479416934 34.948744806988906 9.6902782512916 14.163649462302558 15 28.988456204385194 31.025674647924262 20.791451142886675 19.19441800480387 16 32.25694085559534 20.514017466103695 24.39747187327896 22.831569805022006 17 22.609086014621422 21.19020034648356 27.429804682618897 28.77090895627612 18 22.559010963751895 25.369816437760228 28.819441337679546 23.251731260808327 19 27.675922169240096 23.38622118486271 26.76118088262291 22.176675763274282 20 26.549804312378228 24.481732479517206 26.687194455028873 22.281268753075697 21 30.180877994899934 23.51469469799931 22.276023676890965 24.028403630209787 22 28.102192596112165 26.03371966918996 23.79006119769772 22.074026537000154 23 24.34844583764638 25.215580344539802 25.614576375251264 24.82139744256256 24 25.211384283592015 29.684817201381613 21.659449544681106 23.444348970345267 25 26.755411298819702 23.661340857446543 25.444851880591212 24.138395963142543 26 26.9110049411703 25.856189267031453 21.59641607029636 25.636389721501878 27 28.21199980870899 27.648740333247456 20.39044964186928 23.74881021617427 28 28.34053502862423 27.601472940806232 20.364810475342743 23.693181555226793 29 29.280668654653386 26.054915947654138 19.32045410018404 25.343961297508432 30 29.70422398326512 26.125261675308188 19.682888864548993 24.487625476877696 31 26.351386165648762 26.83871544998897 19.57530309598335 27.234595288378916 32 26.291407176806892 29.843002528435253 19.607760861550044 24.25782943320781 33 28.23387486173825 29.870400338153146 19.69029367798626 22.20543112212234 34 26.500469742852427 30.082116295680372 20.32636715224759 23.09104680921961 35 27.4788615716408 29.98866137942418 19.33257948218757 23.199897566747453 36 26.954477366724927 29.367520945594677 22.042864613784985 21.63513707389541 37 26.314115271347845 30.14046005488818 21.324505150202015 22.220919523561964 38 26.038316824198933 30.72655103844795 22.356242489128036 20.878889648225083 39 26.191226221678516 31.848287714026107 21.102823547923798 20.85766251637158 40 25.564161937099193 32.79823271785964 19.868256027595272 21.769349317445894 41 26.559399716457357 32.20809994029869 19.983154049430215 21.249346293813744 42 26.100393843514695 31.871797996689434 20.729250710013623 21.29855744978225 43 26.65760605466912 31.979723152537616 18.890296146257405 22.472374646535858 44 25.542595417963156 31.080100026688186 19.48795715081291 23.88934740453576 45 25.79269299180688 32.39834193885784 19.630222128976424 22.178742940358855 46 27.476455007273685 29.209952686327473 19.433099824598482 23.88049248180036 47 27.730069867500116 28.52698206029678 20.90051787413977 22.842430198063333 48 28.097348613988622 29.027177207984238 19.997562582243567 22.877911595783576 49 27.021953729172033 29.688858995382787 20.357683342409373 22.931503933035806 50 26.13084613877546 30.743088455124518 20.055968048230017 23.070097357870008 51 24.926638353539733 31.27225493538529 21.07943667881776 22.72167003225722 52 25.406531971053347 30.220432040010675 21.351902959919904 23.02113302901607 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 29.5 6 59.0 7 177.0 8 295.0 9 827.0 10 1359.0 11 2406.0 12 3453.0 13 4342.0 14 5218.0 15 5205.0 16 5137.0 17 5069.0 18 6103.0 19 7137.0 20 8755.5 21 10374.0 22 14311.0 23 18248.0 24 25229.5 25 32211.0 26 41074.0 27 49937.0 28 56895.5 29 63854.0 30 66196.0 31 68538.0 32 68630.0 33 68722.0 34 70692.5 35 72663.0 36 75497.5 37 78332.0 38 81804.5 39 89854.5 40 94432.0 41 106232.0 42 118032.0 43 128068.0 44 138104.0 45 148968.0 46 159832.0 47 173747.5 48 187663.0 49 198621.0 50 209579.0 51 213925.5 52 218272.0 53 228306.0 54 238340.0 55 235429.5 56 232519.0 57 240736.0 58 248953.0 59 233201.5 60 217450.0 61 201138.0 62 184826.0 63 158520.0 64 113010.0 65 93806.0 66 80301.0 67 66796.0 68 58474.0 69 50152.0 70 40886.5 71 31621.0 72 28455.0 73 25289.0 74 17090.0 75 8891.0 76 7126.0 77 5361.0 78 3404.0 79 1447.0 80 908.0 81 369.0 82 615.0 83 861.0 84 601.0 85 341.0 86 176.5 87 12.0 88 10.5 89 4.5 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 52 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 52 3241135.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 13.73266319672396 #Duplication Level Percentage of deduplicated Percentage of total 1 74.22346883189292 10.192858987609238 2 8.043924392372022 2.2092900892071485 3 3.781557138954584 1.5579255164529113 4 2.4313959478847473 1.335581666007226 5 1.6566609892071018 1.1375183697966338 6 1.180727865075836 0.9728722858844032 7 0.9006082241375337 0.8657424589996304 8 0.682233562781547 0.7495106991344014 9 0.5762493665708402 0.7122094621598586 >10 3.7792445735401454 9.909675595172525 >50 0.7804911070982316 7.909962150790858 >100 1.8694049634490224 53.641021135249446 >500 0.08606016107733556 7.477120344709505 >1k 0.00797287595811828 1.3287112388262152 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.04939627630444273 0.0 0.0 0.0 0.0 10 0.04939627630444273 0.0 0.0 0.0 0.0 11 0.06093544391085222 0.0 0.0 0.0 0.0 12 0.07623872501453965 0.0 0.0 0.0 0.0 13 0.08611180959756382 0.0 0.0 0.0 0.0 14 0.15713631181669385 0.0 0.0 0.0 0.0 15 0.21011158128248283 0.0 0.0 0.0 0.0 16 0.2419831324520577 0.0 0.0 0.0 0.0 17 0.2659253625658913 0.0 0.0 0.0 0.0 18 0.3141800634654218 0.0 0.0 0.0 0.0 19 0.3461750281922845 0.0 0.0 0.0 0.0 20 0.37928071493473736 0.0 0.0 0.0 0.0 21 0.41325029657820483 0.0 0.0 0.0 0.0 22 0.45119996544420393 0.0 0.0 0.0 0.0 23 0.4880697656839348 0.0 0.0 0.0 0.0 24 0.5353680115144849 0.0 0.0 0.0 0.0 25 0.5781925158933522 0.0 0.0 0.0 0.0 26 0.6250588142733949 0.0 0.0 0.0 0.0 27 0.6738380227913987 0.0 0.0 0.0 0.0 28 0.7264430515853243 0.0 0.0 0.0 0.0 29 0.7764563956762061 0.0 0.0 0.0 0.0 30 0.8351395421665558 0.0 0.0 0.0 0.0 31 0.8972782682609641 0.0 0.0 0.0 0.0 32 0.962193799394348 0.0 0.0 0.0 0.0 33 1.0197045170904637 0.0 0.0 0.0 0.0 34 1.0720318653804917 0.0 0.0 0.0 0.0 35 1.1218600891354418 0.0 0.0 0.0 0.0 36 1.1732618357458113 0.0 0.0 0.0 0.0 37 1.229569271258371 0.0 0.0 0.0 0.0 38 1.2903195948332915 0.0 0.0 0.0 0.0 39 1.359122653021241 0.0 0.0 0.0 0.0 40 1.4391563449223805 0.0 0.0 0.0 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TTATCCG 20 6.313162E-4 46.000004 46 CGACTAT 20 6.313162E-4 46.000004 28 GCGCTAA 40 5.6170393E-9 46.000004 34 ACCGGTA 50 1.6370905E-11 46.0 46 TTACTCG 25 3.4185425E-5 46.0 25 CGATTAG 25 3.4185425E-5 46.0 31 CGTTAAC 30 1.8624596E-6 46.0 33 TTACGCC 45 3.110472E-10 46.0 38 ACCGTAC 25 3.4185425E-5 46.0 31 ACGGTAG 25 3.4185425E-5 46.0 36 ACGAACT 45 3.110472E-10 46.0 28 TAAGCGC 35 1.0203439E-7 45.999996 39 TAGTCGG 35 1.0203439E-7 45.999996 19 GATTGCG 280 0.0 43.535713 13 CGCTATA 1240 0.0 43.403225 1 AGGGGAT 25065 0.0 42.760822 9 TATCCGG 70 0.0 42.714283 24 TCGCGTG 65 0.0 42.46154 20 CTATACA 22870 0.0 42.449932 3 TCATACA 25935 0.0 42.372856 3 >>END_MODULE