SRR1527934_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1527934_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1334500
Sequences flagged as poor quality	0
Sequence length	59
%GC	54

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAATATCTCTGGGGGAGGCCATGGCCATGGGCAGCGTGGAGGCCTCTTATAAGTGTTTA	2363	0.1770700636942675	No Hit
TTTTATCTCTGGGGTGGCAGTCCTCCTGCCTCAGCTTCCCAAGTGCTGAGTTTATAGGC	1573	0.11787186212064443	No Hit
TAGCATCTCTGGGCAAACGAGAACTTTGAAGGCCGAAGTGGAGAAGGGTTCCATGTGAA	1557	0.11667291120269765	No Hit
TGTTATCTCTGGGGAACTGAGGCCATGATTAAGAGGGACGGCCGGGGGCATTCGTATTG	1545	0.11577369801423754	No Hit
TGTAATCTCTGGGGCTCTTCGCCATCTTTACCCCGGCAGGCCGACATCTATCACCATGA	1494	0.11195204196328212	No Hit
GACGATCTCTGGGTGGCTAACACGGTGAAACCCCGTCTCTACCAAAAAATACAAAAAAT	1421	0.10648182840014987	No Hit
GGGCATCTCTGGGGGGAATTCGTGGAGAAAGAAATGGCCCGGTGGGCTGCAATAAAGGC	1390	0.10415886099662795	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCACGAA	25	1.4788615E-5	53.000004	41
ACTATTC	25	1.4788615E-5	53.000004	43
TACCCGT	25	1.4788615E-5	53.000004	35
CTACTAC	25	1.4788615E-5	53.000004	33
AGTCACG	25	1.4788615E-5	53.000004	39
ATAGGCG	50	3.6379788E-12	53.000004	37
CGAAAGT	55	0.0	53.000004	38
CGTGATA	25	1.4788615E-5	53.000004	17
ACACCCG	25	1.4788615E-5	53.000004	15
GACGTAA	25	1.4788615E-5	53.000004	48
TTCACCG	25	1.4788615E-5	53.000004	29
CAATTCC	75	0.0	53.000004	25
CGACAAT	25	1.4788615E-5	53.000004	38
CGTTCAC	25	1.4788615E-5	53.000004	18
ATACTCA	25	1.4788615E-5	53.000004	17
CCACTAA	25	1.4788615E-5	53.000004	46
TAACCGG	55	0.0	53.000004	35
CGGATTA	25	1.4788615E-5	53.000004	24
TTAAGTC	55	0.0	53.000004	27
CTAAACT	50	3.6379788E-12	53.000004	27