##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1527916_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4267071 Sequences flagged as poor quality 0 Sequence length 59 %GC 56 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.45602498763203 31.0 31.0 33.0 30.0 34.0 2 31.954166921525328 31.0 31.0 34.0 30.0 34.0 3 32.22218847542026 34.0 31.0 34.0 30.0 34.0 4 35.90144738627504 37.0 35.0 37.0 35.0 37.0 5 35.562573015541574 37.0 35.0 37.0 33.0 37.0 6 35.7672773666058 37.0 35.0 37.0 33.0 37.0 7 35.03510534509503 37.0 35.0 37.0 32.0 37.0 8 35.51326354775911 37.0 35.0 37.0 33.0 37.0 9 37.45497649324326 39.0 37.0 39.0 34.0 39.0 10 37.108064759175555 39.0 37.0 39.0 33.0 39.0 11 37.78583552980487 39.0 37.0 39.0 35.0 39.0 12 37.83380965538188 39.0 37.0 39.0 35.0 39.0 13 37.60981478864542 39.0 37.0 39.0 35.0 39.0 14 35.12789288015128 35.0 33.0 39.0 31.0 40.0 15 34.043348938885714 35.0 33.0 39.0 23.0 40.0 16 33.951212435884 35.0 33.0 39.0 23.0 40.0 17 34.240337927351106 35.0 33.0 39.0 25.0 40.0 18 34.48846292925522 35.0 33.0 40.0 27.0 40.0 19 34.68542824808868 35.0 33.0 40.0 28.0 40.0 20 34.78693792533567 35.0 34.0 40.0 29.0 40.0 21 34.682940827560635 35.0 34.0 40.0 29.0 40.0 22 34.64886452557269 35.0 34.0 40.0 28.0 40.0 23 34.592578609542706 35.0 33.0 40.0 28.0 40.0 24 34.5489728199976 35.0 33.0 39.0 27.0 40.0 25 34.50729669133698 35.0 33.0 39.0 27.0 40.0 26 34.43428900058143 35.0 33.0 39.0 27.0 40.0 27 34.379907435334445 35.0 33.0 39.0 27.0 40.0 28 34.451640012551934 35.0 33.0 39.0 27.0 40.0 29 34.46085382689906 35.0 33.0 39.0 27.0 40.0 30 34.447237226659695 35.0 33.0 39.0 27.0 40.0 31 34.482307418836015 35.0 34.0 39.0 28.0 40.0 32 34.37208005210131 35.0 33.0 39.0 27.0 40.0 33 34.27548545594859 35.0 33.0 39.0 27.0 40.0 34 34.193608683802076 35.0 33.0 39.0 27.0 40.0 35 34.08514974323136 35.0 33.0 39.0 27.0 40.0 36 33.962828835048676 35.0 33.0 39.0 26.0 40.0 37 33.825056109917085 35.0 33.0 38.0 25.0 40.0 38 33.52307543042991 35.0 33.0 38.0 23.0 40.0 39 33.532695378164554 35.0 33.0 38.0 24.0 40.0 40 33.47214025733343 35.0 33.0 38.0 23.0 40.0 41 33.45651900331632 35.0 33.0 38.0 24.0 40.0 42 33.42154067743424 35.0 33.0 38.0 24.0 40.0 43 33.27488270056908 35.0 33.0 37.0 23.0 40.0 44 33.20921798582681 35.0 33.0 37.0 23.0 40.0 45 33.11720311192385 35.0 33.0 37.0 23.0 40.0 46 32.97741284361099 35.0 32.0 37.0 23.0 40.0 47 32.920468161884344 35.0 32.0 36.0 23.0 40.0 48 32.822266608640916 35.0 32.0 36.0 23.0 40.0 49 32.763977210597155 35.0 32.0 36.0 24.0 40.0 50 32.61940403616438 35.0 32.0 36.0 23.0 39.0 51 32.51732277245914 35.0 32.0 35.0 23.0 39.0 52 32.413913197132175 35.0 32.0 35.0 23.0 39.0 53 32.25443213857937 35.0 31.0 35.0 23.0 39.0 54 32.160156228944864 34.0 31.0 35.0 23.0 39.0 55 32.07776083407096 34.0 31.0 35.0 23.0 38.0 56 31.92322719729763 34.0 31.0 35.0 23.0 38.0 57 31.82400949035064 34.0 31.0 35.0 23.0 38.0 58 31.67681179900686 34.0 31.0 35.0 22.0 37.0 59 31.19279290173517 34.0 30.0 35.0 22.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 1.0 11 2.0 12 7.0 13 19.0 14 88.0 15 396.0 16 1160.0 17 2811.0 18 5541.0 19 9465.0 20 14547.0 21 20762.0 22 28395.0 23 37432.0 24 48557.0 25 61379.0 26 75847.0 27 90586.0 28 106391.0 29 125663.0 30 153007.0 31 188421.0 32 240440.0 33 343336.0 34 728011.0 35 700643.0 36 257529.0 37 390771.0 38 526719.0 39 109144.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 28.887403092191345 17.501419592033972 33.823411890732544 19.787765425042142 2 21.44299919077981 20.6995618305859 33.31556939174436 24.54186958688993 3 18.863712368507578 22.484955136673378 33.57602908411882 25.075303410700222 4 16.045760663462126 22.627582245526266 31.23814907227932 30.088508018732284 5 0.0 100.0 0.0 0.0 6 100.0 0.0 0.0 0.0 7 0.0 100.0 0.0 0.0 8 0.0 0.0 100.0 0.0 9 100.0 0.0 0.0 0.0 10 100.0 0.0 0.0 0.0 11 98.83711801373823 0.8295620110375478 0.2047071632977281 0.1286128119264948 12 98.24050267736347 1.033355198448772 0.386705541107706 0.33943658308005653 13 91.96734715686709 3.815989937828548 2.3239594560296744 1.8927034492746897 14 57.33396514845898 23.74399207325118 6.799324407772919 12.12271837051692 15 36.576072908090815 20.221482136106943 19.08205886426544 24.120386091536794 16 31.8792211331848 15.674194312679587 26.878741881726363 25.567842672409245 17 24.180802241162617 15.98914102905717 27.805185336733324 32.024871393046894 18 24.102669020506102 17.556023792432796 32.12201062508686 26.219296561974243 19 29.502579169645877 18.672386749599433 27.924119378374535 23.900914702380156 20 33.6418353479471 18.99396564997395 24.031097678009107 23.333101324069837 21 32.57447555946456 20.021602640312288 21.859350360001038 25.544571440222107 22 31.478454424592417 21.053270498662897 22.161806072596402 25.30646900414828 23 30.286512692195654 23.306642893919506 21.987822560252688 24.419021853632152 24 33.14425750122273 22.21568377934185 21.538896353025294 23.101162366410122 25 32.358331979945966 21.69729540474016 23.01555329170759 22.928819323606287 26 31.602028651503574 18.953985063759195 24.686254341678403 24.757731943058833 27 33.628945944419485 20.053498055223358 22.512585330780762 23.80497066957639 28 34.404981777898705 19.75755735022923 20.08040175567737 25.757059116194693 29 29.97011298851132 20.856531330273153 19.119602181449523 30.053753499766 30 28.442390576580518 20.019423159352165 22.379754168608866 29.15843209545845 31 26.262136252244222 19.784554791799806 21.720308848856746 32.23300010709922 32 26.448938862278133 23.736774007275717 20.251455858128445 29.56283127231771 33 30.45053621090439 22.44272476366107 20.371374181493582 26.73536484394096 34 29.825470445652297 20.96813012954319 22.33194619916097 26.874453225643542 35 32.0907479627126 20.256096043398387 20.93703151412292 26.716124479766094 36 35.09001842247294 19.628077432974518 20.589603500855738 24.692300643696814 37 32.669997757243785 21.077338530340835 22.218214789489092 24.034448922926288 38 28.004807044457426 22.786520308661373 27.991402064788705 21.217270582092493 39 28.393410843175566 25.569553447786546 25.346824554829293 20.69021115420859 40 28.380287086856537 28.090533295555666 21.25851667338087 22.27066294420693 41 30.744086517426123 27.10664997137381 19.43928282421361 22.70998068698646 42 30.484048660076198 26.56222500164633 19.919190470465573 23.0345358678119 43 30.681045616536494 24.77992515240548 20.126288032235696 24.41274119882233 44 28.695515026583806 22.599670828069186 19.61734407512788 29.08747007021913 45 25.961485056142724 24.768582477301173 19.82537904806365 29.444553418492454 46 25.8000862886978 22.785606332774872 20.832955439457184 30.58135193907015 47 27.263924129689897 19.999784395431902 22.950965662394648 29.785325812483553 48 27.754588569067636 20.041499192303107 22.293840435277502 29.910071803351762 49 28.239816023684632 22.116927513041144 21.835540116393656 27.807716346880568 50 27.682056380125854 23.340085037253893 21.59462544682289 27.383233135797365 51 26.2216635251675 21.875895667074673 23.84602927863164 28.056411529126184 52 27.896629795941998 20.48086380564092 25.663130517397065 25.959375881020026 53 29.159322636065816 21.11049945032553 23.808392220330994 25.92178569327766 54 27.796959553754792 19.926994418419568 24.02261410696002 28.253431920865623 55 27.345267983588744 20.512220209131744 24.51189586486843 27.63061594241108 56 25.761207160602673 22.38711284625918 23.962268263171623 27.88941172996653 57 27.442922791769814 20.911721412650504 25.831278645234633 25.81407715034505 58 26.37160244111242 21.199366028828674 24.687519846752025 27.741511683306886 59 26.321825908216667 20.770594161662647 22.21029366513939 30.697286264981294 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 3.5 7 7.0 8 39.0 9 109.5 10 148.0 11 281.0 12 414.0 13 459.5 14 619.5 15 734.0 16 821.0 17 908.0 18 998.5 19 1196.5 20 1304.0 21 1734.0 22 2164.0 23 3102.0 24 4040.0 25 5253.5 26 7955.5 27 9444.0 28 12085.0 29 14726.0 30 15961.5 31 21623.0 32 26049.0 33 29734.5 34 33420.0 35 34691.5 36 39231.5 37 42500.0 38 45774.5 39 49049.0 40 57003.5 41 64958.0 42 69193.0 43 85937.0 44 98446.0 45 102115.0 46 105784.0 47 116534.0 48 138110.5 49 148937.0 50 158102.5 51 167268.0 52 181035.0 53 225290.0 54 255778.0 55 292121.5 56 328465.0 57 350188.0 58 396397.5 59 420884.0 60 399715.0 61 378546.0 62 350238.0 63 321930.0 64 298294.5 65 243262.5 66 211866.0 67 181632.0 68 151398.0 69 126340.5 70 91347.0 71 81411.0 72 71841.0 73 62271.0 74 51896.0 75 30889.0 76 20257.0 77 14989.0 78 9721.0 79 6905.5 80 4090.0 81 3187.5 82 1628.5 83 972.0 84 682.5 85 393.0 86 277.0 87 123.5 88 86.0 89 73.0 90 60.0 91 35.5 92 8.0 93 5.0 94 3.0 95 1.0 96 0.5 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 52 0.0 53 0.0 54 0.0 55 0.0 56 0.0 57 0.0 58 0.0 59 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 59 4267071.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 10.472504076557122 #Duplication Level Percentage of deduplicated Percentage of total 1 78.14942612740441 8.184201836998424 2 7.7349037232917865 1.6200762154790023 3 3.391409757317817 1.0654965752635932 4 1.9348109371253654 0.8104926170565078 5 1.21494068378662 0.6361735631865237 6 0.761618068711785 0.4785628997618238 7 0.4939726335421714 0.36211912929346335 8 0.34262241856845577 0.2870491740142411 9 0.25673607783546126 0.24198026595580394 >10 1.8903462401688307 4.409717984955926 >50 0.9502274246749414 7.517775142544275 >100 2.69546129333895 61.20801317122202 >500 0.17131977535579906 11.452599193267158 >1k 0.012204838877589906 1.7257422310012471 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 0.0 0.0 10 0.0 0.0 0.0 0.0 0.0 11 0.004429267757672652 0.0 0.0 0.0 0.0 12 0.011553592616574695 0.0 0.0 0.0 0.0 13 0.01909975250001699 0.0 0.0 0.0 0.0 14 0.03302030830984533 0.0 0.0 0.0 0.0 15 0.042628772757706636 0.0 0.0 0.0 0.0 16 0.049401568429491796 0.0 0.0 0.0 0.0 17 0.05659619912581722 0.0 0.0 0.0 0.0 18 0.0658062638282794 0.0 0.0 0.0 0.0 19 0.07548503411356408 0.0 0.0 0.0 0.0 20 0.08542159246940115 0.0 0.0 0.0 0.0 21 0.09631899727002434 0.0 0.0 0.0 2.343527914112514E-5 22 0.10859908353997391 0.0 0.0 0.0 2.343527914112514E-5 23 0.12273055686207236 0.0 0.0 0.0 2.343527914112514E-5 24 0.13651050099705395 0.0 0.0 0.0 2.343527914112514E-5 25 0.1523996202547368 0.0 0.0 0.0 2.343527914112514E-5 26 0.16728102250935126 0.0 0.0 0.0 2.343527914112514E-5 27 0.1827014361842116 0.0 0.0 0.0 2.343527914112514E-5 28 0.19755940315968495 0.0 0.0 0.0 2.343527914112514E-5 29 0.21234706429773492 0.0 0.0 0.0 2.343527914112514E-5 30 0.22889237137136925 0.0 0.0 0.0 2.343527914112514E-5 31 0.24480492590819322 0.0 0.0 0.0 2.343527914112514E-5 32 0.2576474588775298 0.0 0.0 0.0 2.343527914112514E-5 33 0.2688729575861287 0.0 0.0 0.0 2.343527914112514E-5 34 0.2794422684787762 0.0 0.0 0.0 2.343527914112514E-5 35 0.2880430159235691 0.0 0.0 0.0 2.343527914112514E-5 36 0.2969484219971967 0.0 0.0 0.0 2.343527914112514E-5 37 0.307119333144445 0.0 0.0 0.0 2.343527914112514E-5 38 0.3203602658591807 0.0 0.0 0.0 2.343527914112514E-5 39 0.3407020881536773 0.0 0.0 0.0 2.343527914112514E-5 40 0.371355433270269 0.0 0.0 0.0 2.343527914112514E-5 41 0.3946969712948296 0.0 0.0 0.0 2.343527914112514E-5 42 0.4089690562917748 0.0 0.0 0.0 2.343527914112514E-5 43 0.42192876565681703 0.0 0.0 0.0 2.343527914112514E-5 44 0.43313082908627487 0.0 0.0 0.0 2.343527914112514E-5 45 0.4451765625648132 0.0 0.0 0.0 2.343527914112514E-5 46 0.4581362719298554 0.0 0.0 0.0 2.343527914112514E-5 47 0.47051009931636945 0.0 0.0 0.0 2.343527914112514E-5 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TAATACG 15 0.0066975057 53.0 39 CAAACCG 165 0.0 53.0 35 ATTAGCG 25 1.479415E-5 53.0 14 CGTATAC 60 0.0 53.0 16 CGTTAGT 15 0.0066975057 53.0 42 TTGCGAT 20 3.139211E-4 53.0 49 CAATGCG 20 3.139211E-4 53.0 19 ATACGCA 15 0.0066975057 53.0 27 TCGACTA 25 1.479415E-5 53.0 19 CGCTTAT 15 0.0066975057 53.0 17 ACGGTAC 30 7.0150054E-7 53.0 38 ATGGGGG 391480 0.0 51.960934 7 GATGGGG 423125 0.0 51.947205 6 TAGATGG 136675 0.0 51.877377 4 TGGGGGG 230900 0.0 51.80756 8 TTAGATG 45110 0.0 51.70173 3 CAGATGG 131555 0.0 51.66246 4 AGATGGG 433085 0.0 51.611626 5 ATAGATG 31840 0.0 51.501884 3 GTTAGAT 10200 0.0 51.493137 2 >>END_MODULE