##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1527912_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 5869280 Sequences flagged as poor quality 0 Sequence length 52 %GC 55 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.266075055202684 31.0 31.0 33.0 30.0 33.0 2 31.81763163454461 31.0 31.0 34.0 30.0 34.0 3 32.29842672355042 33.0 31.0 34.0 30.0 34.0 4 35.9834090382466 37.0 35.0 37.0 35.0 37.0 5 36.10159355150887 37.0 35.0 37.0 35.0 37.0 6 33.93634057329008 35.0 33.0 35.0 31.0 37.0 7 35.214030852165855 35.0 35.0 37.0 33.0 37.0 8 35.714553233105256 37.0 35.0 37.0 35.0 37.0 9 34.92916422457269 37.0 34.0 37.0 31.0 39.0 10 36.82999447973176 37.0 37.0 39.0 34.0 39.0 11 37.77779318758008 39.0 37.0 39.0 35.0 39.0 12 38.13946276204236 39.0 39.0 39.0 37.0 39.0 13 38.181646811874714 39.0 39.0 39.0 37.0 39.0 14 38.681412711610285 40.0 39.0 40.0 36.0 40.0 15 38.11570362974675 40.0 38.0 40.0 34.0 40.0 16 37.52753421203282 39.0 36.0 40.0 33.0 40.0 17 37.55691481749039 40.0 37.0 40.0 33.0 40.0 18 37.480662193659185 40.0 37.0 40.0 33.0 40.0 19 37.62574216939727 40.0 37.0 40.0 33.0 40.0 20 37.66459242019464 40.0 37.0 40.0 33.0 40.0 21 37.399520724858924 40.0 36.0 40.0 33.0 40.0 22 37.48590150751029 40.0 36.0 40.0 33.0 40.0 23 37.45269317531282 40.0 36.0 40.0 33.0 40.0 24 37.38407351497969 40.0 36.0 40.0 33.0 40.0 25 37.6391886227953 40.0 37.0 40.0 33.0 40.0 26 37.70286116866123 40.0 37.0 40.0 33.0 40.0 27 37.752460267698936 40.0 37.0 40.0 34.0 40.0 28 37.744249550200365 40.0 37.0 40.0 34.0 40.0 29 37.78634568464957 40.0 37.0 40.0 34.0 40.0 30 37.775209906496194 40.0 37.0 40.0 34.0 40.0 31 37.763768809802905 40.0 37.0 40.0 34.0 40.0 32 37.721550513862006 40.0 37.0 40.0 34.0 40.0 33 37.68611431044353 40.0 37.0 40.0 34.0 40.0 34 37.637992394297086 40.0 37.0 40.0 33.0 40.0 35 37.558702259902404 40.0 36.0 40.0 33.0 40.0 36 37.54582878990268 40.0 36.0 40.0 33.0 40.0 37 37.43970623313251 40.0 36.0 40.0 33.0 40.0 38 37.27718851375297 40.0 35.0 40.0 33.0 40.0 39 37.21027451408009 40.0 35.0 40.0 33.0 40.0 40 37.138897956819235 40.0 35.0 40.0 33.0 40.0 41 37.06494305945533 39.0 35.0 40.0 33.0 40.0 42 36.95632650001363 39.0 35.0 40.0 32.0 40.0 43 36.8478932679988 39.0 35.0 40.0 32.0 40.0 44 36.74008634789957 39.0 35.0 40.0 32.0 40.0 45 36.60724705585694 39.0 35.0 40.0 32.0 40.0 46 36.49518816618052 39.0 35.0 40.0 31.0 40.0 47 36.41046516778889 38.0 35.0 40.0 31.0 40.0 48 36.28234945342529 38.0 35.0 40.0 31.0 40.0 49 36.170355478014336 38.0 35.0 40.0 31.0 40.0 50 36.0517051495243 38.0 35.0 40.0 31.0 40.0 51 35.91490438350189 37.0 35.0 40.0 31.0 40.0 52 35.2401817599433 36.0 34.0 40.0 29.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 13 5.0 14 11.0 15 24.0 16 69.0 17 253.0 18 518.0 19 912.0 20 1595.0 21 2811.0 22 4928.0 23 7831.0 24 11528.0 25 16847.0 26 24271.0 27 34506.0 28 47614.0 29 65847.0 30 88138.0 31 116934.0 32 155041.0 33 210346.0 34 347884.0 35 523176.0 36 516715.0 37 938059.0 38 2224169.0 39 529248.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 31.99872897527465 18.224041108960552 31.19917604885097 18.57805386691383 2 31.1446719188725 18.719399994547885 31.211034402856907 18.924893683722704 3 22.177490254341247 22.61877095657389 33.8402495706458 21.363489218439057 4 26.342106697925473 20.256726549082682 32.61498855055475 20.786178202437096 5 100.0 0.0 0.0 0.0 6 0.0 0.0 100.0 0.0 7 100.0 0.0 0.0 0.0 8 100.0 0.0 0.0 0.0 9 0.0 0.0 100.0 0.0 10 0.0 100.0 0.0 0.0 11 99.14279093858191 0.730140664613036 0.10948532017555816 0.017583076629501405 12 99.05461998746013 0.7330711773846196 0.10749188997628328 0.10481694517896574 13 98.15616225499551 1.0173820298230787 0.303512526238312 0.5229431889431072 14 56.3641707330371 24.4643806395333 7.889843387945369 11.28160523948423 15 34.27135866750266 27.35245208952376 18.63490922225554 19.741280020718044 16 29.336920371834363 19.077791483793582 26.074987051222635 25.51030109314942 17 23.693246871847997 18.721206008232695 28.038822479077503 29.54672464084181 18 22.49025434124799 19.884449199901862 30.877875991603744 26.747420467246407 19 25.39313169588093 21.237664585775427 28.486509418531746 24.882694299811902 20 29.953622931603196 20.9650076329635 25.500538396532452 23.580831038900854 21 30.675892102608838 21.35938309298585 23.724818035602322 24.23990676880299 22 29.961954447564267 21.85961480794919 23.876523185126626 24.301907559359922 23 29.163031922143773 22.44716558078674 23.03672682168852 25.353075675380964 24 28.99539636889022 23.469011531227 22.872566992884988 24.66302510699779 25 28.95516996974075 22.57341616007415 24.802428918027424 23.668984952157675 26 28.297729874873923 21.128809666603058 24.720323446828232 25.853137011694788 27 28.28353733336968 22.57844233023471 24.28415410408091 24.853866232314697 28 28.443079900771473 22.474715808412615 23.16144399313033 25.920760297685575 29 29.176270343210753 21.95230079328299 22.329791729138837 26.54163713436742 30 26.874471826186518 22.575648120382738 22.72396273478178 27.825917318648962 31 26.05570018809803 21.881440312951504 23.792509473052913 28.270350025897557 32 26.685181146580163 23.360752937327916 22.750899599269417 27.203166316822507 33 28.100635853119975 23.698460458523023 22.51436292015375 25.686540768203255 34 28.09767126461849 22.41394174413216 23.838545784150696 25.649841207098657 35 29.31846836409236 22.245454297631056 22.80301842815473 25.633058910121854 36 31.27981626366437 21.96668075130169 22.499505901916418 24.253997083117522 37 30.877279666330455 21.95211337676853 22.48577338276586 24.68483357413516 38 29.019573099255787 23.1034471008369 24.577512062808385 23.29946773709893 39 27.721969304582505 25.059973284627755 23.92724490908595 23.290812501703787 40 28.080105225853934 26.02349862334051 22.330575470926586 23.565820679878964 41 28.93808099119483 24.732011422184662 21.945315268653054 24.384592317967453 42 28.97285527355996 24.75859049150833 21.903828067497205 24.364726167434505 43 28.73369476324183 23.63156980072513 21.647169669874327 25.98756576615871 44 28.490002180846712 23.843997900935037 22.302854864651202 25.36314505356705 45 26.260529400539763 24.438159365373608 22.451237630510047 26.85007360357659 46 25.32474170596734 24.025825995692827 23.277335550527493 27.372096747812336 47 26.512008287217515 22.038035329716763 23.641996974075184 27.80795940899054 48 27.197577897118556 22.33941812283619 22.731408281765393 27.73159569827986 49 26.82298339830439 22.390293187580077 22.985562113240466 27.801161300875066 50 27.01007619333206 23.628775590873158 22.47652182209743 26.884626393697353 51 25.572608565275466 23.479506856036856 24.557765177330097 26.390119401357577 52 26.435457159992364 23.171666712100976 24.009316304555245 26.383559823351415 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.5 8 1.0 9 4.5 10 8.0 11 69.5 12 131.0 13 275.5 14 660.0 15 900.0 16 1199.5 17 1499.0 18 1992.5 19 2486.0 20 3196.0 21 3906.0 22 4506.5 23 5107.0 24 6135.0 25 7163.0 26 9486.5 27 11810.0 28 15438.0 29 19066.0 30 23544.5 31 28023.0 32 34001.0 33 39979.0 34 48635.5 35 57292.0 36 66240.0 37 75188.0 38 90798.5 39 115956.0 40 125503.0 41 134906.0 42 144309.0 43 168779.0 44 193249.0 45 207671.0 46 222093.0 47 249754.5 48 277416.0 49 299150.5 50 320885.0 51 359272.0 52 397659.0 53 416627.0 54 435595.0 55 467041.5 56 498488.0 57 497624.0 58 496760.0 59 502486.5 60 508213.0 61 506387.5 62 504562.0 63 459764.0 64 373446.0 65 331926.0 66 274955.0 67 217984.0 68 181732.0 69 145480.0 70 124941.0 71 104402.0 72 89423.0 73 74444.0 74 63803.0 75 53162.0 76 38776.5 77 24391.0 78 16937.5 79 9484.0 80 7406.0 81 5328.0 82 3674.0 83 2020.0 84 1276.0 85 532.0 86 379.0 87 226.0 88 223.0 89 270.0 90 320.0 91 297.5 92 275.0 93 137.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 52 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 52 5869280.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 5.554287682839474 #Duplication Level Percentage of deduplicated Percentage of total 1 68.02123717744041 3.7780951982615982 2 9.199911490604935 1.0219791015096067 3 4.66218192611747 0.7768529894217325 4 2.852558253599955 0.6337571669020925 5 1.7767696635462287 0.49343449287388275 6 1.2206596250955868 0.4067936832364722 7 0.798284266124453 0.31037303267177196 8 0.5728129754379565 0.2545254443236538 9 0.3973974129703858 0.19865336004483172 >10 3.285626307395876 4.099116654966513 >50 1.631507146381566 6.78156258291303 >100 5.1397783562774055 64.30033731278365 >500 0.41041697949669054 14.741096488500851 >1k 0.030858419511029363 2.2034224915903393 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 0.0 0.0 10 0.022575171060164108 0.0 0.0 0.0 0.0 11 0.023410026442766404 0.0 0.0 0.0 0.0 12 0.024227843960417633 0.0 0.0 0.0 0.0 13 0.026170160564839298 0.0 0.0 0.0 0.0 14 0.03092372488618706 0.0 0.0 0.0 0.0 15 0.04373619932938964 0.0 0.0 0.0 0.0 16 0.04910312678897582 0.0 0.0 0.0 0.0 17 0.053890766840225715 0.0 0.0 0.0 0.0 18 0.059871057438050324 0.0 0.0 0.0 0.0 19 0.06772551318049233 0.0 0.0 0.0 0.0 20 0.07529032521876619 0.0 0.0 0.0 0.0 21 0.08202028187443774 0.0 0.0 0.0 0.0 22 0.09013030559114577 0.0 0.0 0.0 0.0 23 0.10011449445247117 0.0 0.0 0.0 0.0 24 0.10865046479295587 0.0 0.0 0.0 0.0 25 0.1174760788376087 0.0 0.0 0.0 0.0 26 0.1267446773709893 0.0 0.0 0.0 0.0 27 0.13630291960853802 0.0 0.0 0.0 0.0 28 0.14579301038628248 0.0 0.0 0.0 0.0 29 0.15731060709320394 0.0 0.0 0.0 0.0 30 0.1706001417550364 0.0 0.0 0.0 0.0 31 0.18237330643622388 0.0 0.0 0.0 0.0 32 0.19276640405637488 0.0 0.0 0.0 0.0 33 0.20402843278903035 0.0 0.0 0.0 0.0 34 0.215341575116539 0.0 0.0 0.0 0.0 35 0.22525761251806015 0.0 0.0 0.0 0.0 36 0.23558255867840688 0.0 0.0 1.703786495106725E-5 0.0 37 0.24498746013139602 0.0 0.0 1.703786495106725E-5 0.0 38 0.25614726167434504 0.0 0.0 1.703786495106725E-5 0.0 39 0.2717539459695227 0.0 0.0 1.703786495106725E-5 0.0 40 0.29257421693972685 0.0 0.0 1.703786495106725E-5 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TACGCGG 50 1.6370905E-11 46.0 34 CGTACCG 25 3.4188837E-5 46.0 25 TATAGCG 30 1.8627197E-6 46.0 28 TATCGCT 25 3.4188837E-5 46.0 46 TATCGCG 25 3.4188837E-5 46.0 14 TGCGTAA 20 6.313584E-4 46.0 34 TGGTAGG 596085 0.0 44.477818 6 TGTGGTA 198035 0.0 44.437904 4 GGTAGGG 586870 0.0 44.41943 7 CGTGGTA 124865 0.0 44.41589 4 GTAGGGA 143445 0.0 44.358116 8 GTAGGGC 66505 0.0 44.336514 8 GTGGTAG 603910 0.0 44.293407 5 GTAGGGG 332780 0.0 44.27835 8 TTGTGGT 71280 0.0 44.205948 3 TAGGGGG 127295 0.0 44.149807 9 TAGGGGC 75510 0.0 44.135876 9 TAGGGAC 22435 0.0 44.07266 9 TAGGGAT 38895 0.0 44.04859 9 TAGGGGA 84415 0.0 43.967422 9 >>END_MODULE