##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1527911_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 5828143 Sequences flagged as poor quality 0 Sequence length 52 %GC 55 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.224065023799177 31.0 31.0 33.0 30.0 33.0 2 31.655049644457936 31.0 31.0 34.0 30.0 34.0 3 32.22329633984616 33.0 31.0 34.0 30.0 34.0 4 35.95124879399836 37.0 35.0 37.0 35.0 37.0 5 36.085237785002874 37.0 35.0 37.0 35.0 37.0 6 33.86404057004092 35.0 33.0 35.0 31.0 37.0 7 35.202982665318956 35.0 35.0 37.0 33.0 37.0 8 35.64557372734334 37.0 35.0 37.0 35.0 37.0 9 34.83837596297826 37.0 34.0 37.0 31.0 39.0 10 36.78399191646464 37.0 37.0 39.0 34.0 39.0 11 37.73882538571892 39.0 37.0 39.0 35.0 39.0 12 38.098303181648085 39.0 38.0 39.0 37.0 39.0 13 38.18236391934789 39.0 39.0 39.0 37.0 39.0 14 38.70469598978611 40.0 39.0 40.0 36.0 40.0 15 38.13954444837747 40.0 38.0 40.0 34.0 40.0 16 37.5639988586416 39.0 36.0 40.0 33.0 40.0 17 37.60532917603429 40.0 37.0 40.0 33.0 40.0 18 37.55378960330932 40.0 37.0 40.0 33.0 40.0 19 37.690611057415715 40.0 37.0 40.0 33.0 40.0 20 37.7084503588879 40.0 37.0 40.0 33.0 40.0 21 37.63738415478138 40.0 37.0 40.0 33.0 40.0 22 37.61853269557731 40.0 37.0 40.0 33.0 40.0 23 37.55697689641452 40.0 37.0 40.0 33.0 40.0 24 37.49327821915145 40.0 36.0 40.0 33.0 40.0 25 37.43089711422661 40.0 36.0 40.0 33.0 40.0 26 37.57208651194729 40.0 37.0 40.0 33.0 40.0 27 37.6908780378244 40.0 37.0 40.0 33.0 40.0 28 37.547725579142444 40.0 37.0 40.0 33.0 40.0 29 37.697360720215684 40.0 37.0 40.0 34.0 40.0 30 37.752629954343945 40.0 37.0 40.0 34.0 40.0 31 37.78348763920172 40.0 37.0 40.0 34.0 40.0 32 37.73869944508911 40.0 37.0 40.0 34.0 40.0 33 37.70011751599094 40.0 37.0 40.0 34.0 40.0 34 37.67164378087497 40.0 37.0 40.0 34.0 40.0 35 37.52630194557683 40.0 36.0 40.0 33.0 40.0 36 37.1430845125111 40.0 35.0 40.0 33.0 40.0 37 37.25550385431517 40.0 35.0 40.0 33.0 40.0 38 37.20752133226656 40.0 35.0 40.0 33.0 40.0 39 37.1802817810064 40.0 35.0 40.0 33.0 40.0 40 37.117688944832 39.0 35.0 40.0 33.0 40.0 41 37.0755079276538 39.0 35.0 40.0 33.0 40.0 42 36.820015226119196 39.0 35.0 40.0 32.0 40.0 43 36.724626008661765 39.0 35.0 40.0 32.0 40.0 44 36.62254838290687 39.0 35.0 40.0 32.0 40.0 45 36.24671735062094 39.0 35.0 40.0 31.0 40.0 46 36.291741125775395 38.0 35.0 40.0 31.0 40.0 47 36.281271753284024 38.0 35.0 40.0 31.0 40.0 48 36.15284422499585 38.0 35.0 40.0 31.0 40.0 49 36.042114100494786 38.0 35.0 40.0 31.0 40.0 50 35.85892641961599 38.0 35.0 40.0 30.0 40.0 51 35.813590366605624 37.0 35.0 40.0 30.0 40.0 52 35.29709446044821 37.0 34.0 40.0 29.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 4.0 13 4.0 14 14.0 15 26.0 16 88.0 17 226.0 18 549.0 19 932.0 20 1573.0 21 2853.0 22 4933.0 23 7864.0 24 11781.0 25 17516.0 26 25213.0 27 35477.0 28 49608.0 29 67269.0 30 90200.0 31 119814.0 32 158688.0 33 215691.0 34 352884.0 35 521319.0 36 527234.0 37 954386.0 38 2154649.0 39 507348.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 31.995440056978698 18.214927121726422 31.173531603462717 18.616101217832163 2 31.214968472805143 18.74219627075039 31.113392379013348 18.929442877431114 3 22.18277760171636 22.585718984589086 33.88715753885929 21.34434587483526 4 26.354466594247945 20.235690853844872 32.62667027902369 20.78317227288349 5 100.0 0.0 0.0 0.0 6 0.0 0.0 100.0 0.0 7 100.0 0.0 0.0 0.0 8 100.0 0.0 0.0 0.0 9 0.0 0.0 100.0 0.0 10 0.0 100.0 0.0 0.0 11 99.13504181349016 0.7346250769756335 0.11120180132848491 0.019131308205718355 12 99.05717824699909 0.728911421699845 0.10816481338910182 0.10574551791196612 13 98.14965075496603 1.0221780762757537 0.3021202465347882 0.5260509222234252 14 56.30301109633034 24.490099161945754 7.899600267186306 11.307289474537601 15 34.29327317466301 27.36834013853126 18.627322630896327 19.711064055909404 16 29.30025910482979 19.10292866870288 26.078632593606578 25.51817963286076 17 23.717400207922147 18.694222156182512 28.04298041417309 29.545397221722254 18 22.47758848744789 19.880689269292123 30.857478960279455 26.78424328298053 19 25.383265304231557 21.2536480316286 28.510796663705744 24.852290000434103 20 29.98689290911359 21.01679728860462 25.453750877423566 23.542558924858227 21 30.378080977079662 21.428883951543398 23.785878280611854 24.407156790765086 22 30.034232173095273 21.838619951500846 23.879046893667503 24.24810098173638 23 29.165773729299367 22.47436276014504 23.012424369134386 25.3474391414212 24 28.94144841675985 23.497741905097385 22.88528267065513 24.675527007487634 25 28.967597397661653 22.57470346901234 24.76287901652379 23.694820116802212 26 28.340279227877556 21.143784563968318 24.708093126747233 25.80784308140689 27 28.274374873780552 22.585547403349572 24.270852654095822 24.86922506877405 28 28.569906400718033 22.46106521408277 23.158422845836142 25.810605539363053 29 29.190601534656924 21.987792681133598 22.296467331017787 26.525138453191694 30 26.86217548196741 22.622711899828126 22.710475703839116 27.80463691436535 31 26.052003185234128 21.90706370794265 23.7636928263428 28.27724028048042 32 26.65248604915837 23.41883169304528 22.742990348726856 27.185691909069494 33 28.13354099238814 23.68709896102412 22.545140021444222 25.634220025143517 34 28.114152312323153 22.424998837537103 23.8431692564853 25.617679593654447 35 29.305286435147526 22.226324920304805 22.81376761002604 25.65462103452163 36 31.32280728183917 21.92243738700303 22.560273486769287 24.194481844388513 37 30.84555406413329 21.978527294199885 22.49481524389501 24.68110339777181 38 29.069842658287552 23.072546435459802 24.551061976344783 23.306548929907862 39 27.702014175012522 25.066766549825566 23.936252078921193 23.294967196240723 40 28.052537489213975 26.013620461955036 22.35497653369178 23.578865515139213 41 28.91469890151975 24.79245962221586 21.892290563220566 24.40055091304383 42 29.052375688105116 24.777566370626115 21.879353337761273 24.2907046035075 43 28.705301156817875 23.637666405920378 21.661445163579547 25.9955872736822 44 28.67542886301863 23.800308262854912 22.188800103223276 25.335462770903185 45 26.352664991233056 24.469938366302955 22.438433648590983 26.738962993873006 46 25.34127937492268 24.075936366008865 23.283351146325682 27.299433112742772 47 26.505732615002753 22.032300854663312 23.6477382246798 27.814228305654133 48 27.18538306283837 22.336926187294992 22.760697532644617 27.71699321722202 49 26.87322531379206 22.377487992315906 22.992486629102956 27.75680006478908 50 27.110453535542966 23.60880644143426 22.475735410061144 26.805004612961625 51 25.557900689808054 23.479571451832943 24.565560591083642 26.396967267275357 52 26.444924223719283 23.16504588168135 23.98573610839679 26.404293786202572 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 1.5 8 3.0 9 8.0 10 13.0 11 65.0 12 117.0 13 259.5 14 628.5 15 855.0 16 1160.0 17 1465.0 18 1973.0 19 2481.0 20 3134.5 21 3788.0 22 4328.5 23 4869.0 24 6026.5 25 7184.0 26 9559.5 27 11935.0 28 15329.5 29 18724.0 30 23268.5 31 27813.0 32 33639.5 33 39466.0 34 48278.5 35 57091.0 36 65799.0 37 74507.0 38 89866.5 39 115480.5 40 125735.0 41 134885.5 42 144036.0 43 168337.0 44 192638.0 45 206898.5 46 221159.0 47 247934.0 48 274709.0 49 297030.5 50 319352.0 51 356848.0 52 394344.0 53 414082.0 54 433820.0 55 463670.5 56 493521.0 57 493254.5 58 492988.0 59 498604.5 60 504221.0 61 501753.5 62 499286.0 63 455370.5 64 370585.0 65 329715.0 66 273319.5 67 216924.0 68 180809.5 69 144695.0 70 124467.0 71 104239.0 72 89209.0 73 74179.0 74 63346.0 75 52513.0 76 38405.0 77 24297.0 78 16854.5 79 9412.0 80 7390.5 81 5369.0 82 3726.5 83 2084.0 84 1317.0 85 550.0 86 369.5 87 189.0 88 190.0 89 253.5 90 316.0 91 291.5 92 267.0 93 133.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 52 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 52 5828143.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 5.869001610433268 #Duplication Level Percentage of deduplicated Percentage of total 1 67.43211192269091 3.9575917346918925 2 9.810880618001292 1.1516014829363623 3 4.877397167860525 0.8587635549868824 4 2.8584900674411817 0.6710593123687919 5 1.796997734773874 0.52732912996664 6 1.1939954266580874 0.4204536649143764 7 0.7940296125494021 0.32621127523489013 8 0.5872793222162134 0.2757394630288892 9 0.40447256293783906 0.2136465110932424 >10 3.2259762812444976 4.306597946926986 >50 1.6675263397457067 7.351308126414328 >100 4.970856428508603 64.67194216646587 >500 0.3553436749034632 13.418380908603384 >1k 0.024642840468476472 1.849374722367466 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 0.0 0.0 10 0.02161923617865931 0.0 0.0 0.0 0.0 11 0.02256293299598174 0.0 0.0 0.0 0.0 12 0.02299188609476466 0.0 0.0 0.0 0.0 13 0.025033702844971376 0.0 0.0 0.0 0.0 14 0.030215456278269083 0.0 0.0 0.0 0.0 15 0.042758044886681744 0.0 0.0 0.0 0.0 16 0.04802558893973603 0.0 0.0 0.0 0.0 17 0.05317302612513111 0.0 0.0 0.0 0.0 18 0.05940142511945915 0.0 0.0 0.0 0.0 19 0.0666593115508662 0.0 0.0 0.0 0.0 20 0.07398583047807852 0.0 0.0 0.0 0.0 21 0.0818785674956843 0.0 0.0 0.0 0.0 22 0.08994288575280325 0.0 0.0 0.0 0.0 23 0.10075250384213291 0.0 0.0 0.0 0.0 24 0.10871387335554396 0.0 0.0 0.0 0.0 25 0.11755030719047216 0.0 0.0 0.0 0.0 26 0.12705590785950174 0.0 0.0 0.0 0.0 27 0.13623550417345628 0.0 0.0 0.0 0.0 28 0.14606710919756086 0.0 0.0 0.0 0.0 29 0.15684241103898788 0.0 0.0 0.0 0.0 30 0.1699169014898914 0.0 0.0 0.0 0.0 31 0.1812069470498579 0.0 0.0 0.0 0.0 32 0.1916562445362099 0.0 0.0 0.0 0.0 33 0.2026031276171501 0.0 0.0 0.0 0.0 34 0.21272642074842707 0.0 0.0 0.0 0.0 35 0.2233129832263896 0.0 0.0 0.0 0.0 36 0.23360785759717975 0.0 0.0 5.147437185395074E-5 0.0 37 0.24362820198474883 0.0 0.0 5.147437185395074E-5 0.0 38 0.2554673075111575 0.0 0.0 5.147437185395074E-5 0.0 39 0.2710125678110506 0.0 0.0 5.147437185395074E-5 0.0 40 0.2921170602711704 0.0 0.0 5.147437185395074E-5 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTACCG 35 1.0205258E-7 46.000004 25 CGTATCG 25 3.4188804E-5 46.0 18 TGGTAGG 592465 0.0 44.499573 6 GGTAGGG 583250 0.0 44.43604 7 TGTGGTA 197285 0.0 44.434296 4 GTAGGGC 65800 0.0 44.371128 8 CGTGGTA 125050 0.0 44.37041 4 GTAGGGA 142985 0.0 44.315834 8 GTAGGGG 330000 0.0 44.292423 8 GTGGTAG 600340 0.0 44.287853 5 TAGGGAC 21915 0.0 44.26831 9 TTGTGGT 71950 0.0 44.16192 3 TAGGGGC 74490 0.0 44.116524 9 TAGGGGG 127090 0.0 44.101578 9 TAGGGGA 82185 0.0 44.094173 9 TAGTGGT 39505 0.0 43.97975 3 TAGGGAT 38725 0.0 43.968754 9 TAGGGCA 30860 0.0 43.84608 9 TAGGGGT 47950 0.0 43.827114 9 ACGTGGT 28800 0.0 43.81979 3 >>END_MODULE