##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1527909_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 3590321 Sequences flagged as poor quality 0 Sequence length 52 %GC 54 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.95909697210918 33.0 31.0 34.0 30.0 34.0 2 32.40945586759513 34.0 31.0 34.0 30.0 34.0 3 32.51993958200395 34.0 31.0 34.0 31.0 34.0 4 36.05897801338655 37.0 35.0 37.0 35.0 37.0 5 36.0948480651173 37.0 35.0 37.0 35.0 37.0 6 36.171531737691424 37.0 36.0 37.0 35.0 37.0 7 36.32136235172287 37.0 37.0 37.0 35.0 37.0 8 36.13280901624117 37.0 37.0 37.0 35.0 37.0 9 37.21219049772987 39.0 37.0 39.0 33.0 39.0 10 37.88784234055952 39.0 38.0 39.0 35.0 39.0 11 38.24823964208214 39.0 39.0 39.0 37.0 39.0 12 38.22547733197115 39.0 39.0 39.0 37.0 39.0 13 38.1890828146007 39.0 39.0 39.0 37.0 39.0 14 38.83137050976779 40.0 39.0 40.0 36.0 40.0 15 38.27402591578859 40.0 38.0 40.0 35.0 40.0 16 37.69678310100963 40.0 37.0 40.0 33.0 40.0 17 37.65137295523158 40.0 37.0 40.0 33.0 40.0 18 37.67728595855357 40.0 37.0 40.0 33.0 40.0 19 37.80044291304315 40.0 37.0 40.0 33.0 40.0 20 37.85534608186845 40.0 37.0 40.0 33.0 40.0 21 37.653969380453724 40.0 37.0 40.0 33.0 40.0 22 37.7324835300242 40.0 37.0 40.0 33.0 40.0 23 37.67872204184528 40.0 37.0 40.0 33.0 40.0 24 37.64514844215879 40.0 37.0 40.0 33.0 40.0 25 37.74982654754268 40.0 37.0 40.0 33.0 40.0 26 37.75045239687482 40.0 37.0 40.0 33.0 40.0 27 37.73547908390364 40.0 37.0 40.0 33.0 40.0 28 37.72642891819422 40.0 37.0 40.0 33.0 40.0 29 37.72777782265151 40.0 37.0 40.0 34.0 40.0 30 37.686281254517354 40.0 37.0 40.0 33.0 40.0 31 37.64539298853779 40.0 37.0 40.0 33.0 40.0 32 37.58744106724719 40.0 37.0 40.0 33.0 40.0 33 37.519772187500784 40.0 36.0 40.0 33.0 40.0 34 37.44717366497313 40.0 36.0 40.0 33.0 40.0 35 37.369607620042885 40.0 36.0 40.0 33.0 40.0 36 37.3126077027653 40.0 36.0 40.0 33.0 40.0 37 37.18582349600495 40.0 35.0 40.0 33.0 40.0 38 37.01258606124633 40.0 35.0 40.0 32.0 40.0 39 36.896130178889294 39.0 35.0 40.0 32.0 40.0 40 36.77682691881868 39.0 35.0 40.0 32.0 40.0 41 36.642487120232424 39.0 35.0 40.0 31.0 40.0 42 36.46173002358285 39.0 35.0 40.0 31.0 40.0 43 36.3172014424337 39.0 35.0 40.0 31.0 40.0 44 36.15887632331482 38.0 35.0 40.0 31.0 40.0 45 35.97614363729594 38.0 35.0 40.0 30.0 40.0 46 35.84102758499867 38.0 35.0 40.0 30.0 40.0 47 35.69311852617078 38.0 35.0 40.0 30.0 40.0 48 35.556063650019034 37.0 35.0 40.0 30.0 40.0 49 35.400598999365236 37.0 35.0 40.0 29.0 40.0 50 35.26350819327854 37.0 34.0 40.0 29.0 40.0 51 35.112351513973266 37.0 34.0 40.0 29.0 40.0 52 34.406461427822194 35.0 33.0 39.0 27.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 1.0 13 1.0 14 9.0 15 17.0 16 43.0 17 103.0 18 338.0 19 698.0 20 1348.0 21 2454.0 22 4115.0 23 6351.0 24 9523.0 25 13887.0 26 19602.0 27 26844.0 28 35653.0 29 46893.0 30 59735.0 31 75514.0 32 92723.0 33 117059.0 34 169353.0 35 316122.0 36 286996.0 37 550892.0 38 1092729.0 39 661317.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 26.000767062332308 20.340994579593303 35.879048140820835 17.779190217253554 2 23.846753535408116 20.53415279580851 37.16088338619304 18.458210282590333 3 24.03999530961159 20.910915764913497 36.28917859990792 18.759910325566988 4 26.439613616721182 21.45510108984684 38.018522577786214 14.08676271564576 5 0.0 0.0 0.0 100.0 6 0.0 100.0 0.0 0.0 7 0.0 0.0 100.0 0.0 8 100.0 0.0 0.0 0.0 9 0.0 100.0 0.0 0.0 10 0.0 0.0 100.0 0.0 11 99.5019108319284 0.3819714170404262 0.041862552122776765 0.07425519890839845 12 99.50029537748854 0.3213640228826336 0.14458317236815316 0.03375742726068226 13 97.85370166065931 1.140343718570011 0.37740358034838667 0.6285510404222909 14 57.96233818647414 29.478756913379055 4.771968857380719 7.786936042766092 15 34.71873406305453 23.885385178651156 20.48098206260666 20.914898695687654 16 29.59821698394099 17.878679928619196 27.826258432045492 24.696844655394322 17 24.27462614067099 17.26840023496506 29.63152876859757 28.82544485576638 18 25.325339990491102 18.458321693241356 30.322887563535406 25.89345075273214 19 25.600969941127826 18.772109791854266 27.904524414390803 27.72239585262711 20 29.39998958310413 18.821548268246765 24.382276682224237 27.396185466424868 21 31.282718174781586 20.542480741972653 21.004417153786527 27.17038392945923 22 30.704747569924805 20.725417030956287 22.1713880179516 26.398447381167312 23 29.36765264164402 20.78365694877979 21.55305890476088 28.295631504815304 24 29.486611364276342 21.605310500091772 21.982964754404968 26.925113381226918 25 31.25873703214838 20.90094451164673 23.144755023297357 24.69556343290753 26 31.377361522827623 20.47092725135162 21.63956927528207 26.512141950538687 27 30.12401955145515 21.55634551896613 21.97602944137864 26.34360548820008 28 30.36672765471388 21.739421071263546 20.75811605703223 27.135735216990348 29 29.356985071808346 21.24759875231212 20.859471896802543 28.535944279076997 30 29.57172910165971 21.22294914577276 20.82941887368845 28.375902878879078 31 29.210173686419683 20.72926069841666 21.44788725019295 28.612678364970705 32 29.28415035870052 22.742256193805513 19.6603312071539 28.31326224034007 33 30.26138888416941 22.56617165985994 20.860808824614846 26.311630631355804 34 29.28080803916976 21.660013129745224 21.422764148386733 27.63641468269829 35 30.99118435371099 22.601516688897732 20.097200222487068 26.3100987349042 36 32.044711322469496 22.758271474890407 20.25626677948852 24.940750423151577 37 32.09284072371245 22.541048558053724 20.80769379673851 24.558416921495322 38 29.70333293318341 24.330916372101548 22.74479078611634 23.2209599085987 39 29.512904277918327 25.20432017081481 22.41456961647719 22.868205934789675 40 29.78870134453159 24.9004197674804 20.011915369127163 25.29896351886085 41 30.324697986614567 24.83181865911154 19.06631746854947 25.777165885724422 42 31.445266314627577 24.75795339748173 19.545828910562594 24.2509513773281 43 31.487351688052406 24.29339883536876 19.42726012520886 24.791989351369974 44 29.636737216533003 24.628884158268857 20.658960577619663 25.075418047578474 45 28.10874013772028 24.33718322122172 20.674307394798404 26.879769246259595 46 27.637110999267193 22.64789137238704 22.328811267850423 27.38618636049534 47 28.199289144341133 21.94795395732025 22.891184381563654 26.96157251677496 48 28.205583846124068 21.42209568448058 23.074064965221773 27.29825550417358 49 28.802410703666887 21.010154802314336 22.472001807080762 27.71543268693802 50 28.315239779395768 22.42877447448292 22.01789199350142 27.23809375261989 51 28.3597483344804 22.011374470416435 23.054735217268874 26.57414197783429 52 28.896051355853697 22.055994436152087 22.791889638837308 26.256064569156905 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 4.0 8 8.0 9 64.5 10 121.0 11 286.5 12 452.0 13 990.5 14 1758.5 15 1988.0 16 2298.0 17 2608.0 18 2892.0 19 3176.0 20 4162.5 21 5149.0 22 6801.0 23 8453.0 24 10784.5 25 13116.0 26 16619.5 27 20123.0 28 22149.0 29 24175.0 30 27079.5 31 29984.0 32 31231.0 33 32478.0 34 34238.0 35 35998.0 36 42207.0 37 48416.0 38 49550.5 39 60013.5 40 69342.0 41 77834.5 42 86327.0 43 97615.5 44 108904.0 45 128149.0 46 147394.0 47 158107.5 48 168821.0 49 178567.0 50 188313.0 51 209471.5 52 230630.0 53 254184.5 54 277739.0 55 297509.0 56 317279.0 57 321985.5 58 326692.0 59 327772.0 60 328852.0 61 313487.5 62 298123.0 63 262870.5 64 198008.0 65 168398.0 66 147816.5 67 127235.0 68 111089.5 69 94944.0 70 79569.5 71 64195.0 72 54859.5 73 45524.0 74 33055.5 75 20587.0 76 14612.0 77 8637.0 78 6145.5 79 3654.0 80 2985.0 81 2316.0 82 1235.5 83 155.0 84 125.0 85 95.0 86 84.0 87 73.0 88 44.0 89 7.5 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 52 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 52 3590321.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 8.122702493021114 #Duplication Level Percentage of deduplicated Percentage of total 1 74.76882422239714 6.073249149115227 2 7.952175981260409 1.2918631933585312 3 3.7319942911998636 0.9094163799920909 4 2.332465217313431 0.7578368414222737 5 1.4689162851965207 0.5965784985902546 6 1.029942034688931 0.5019547639701012 7 0.6975878004401412 0.39664087160153755 8 0.4851473889948716 0.31525663248570623 9 0.36355440042026876 0.26577398111782624 >10 2.538043278568193 4.232531770095741 >50 0.9114192125857815 5.5544379849851 >100 3.442946898416975 63.31830877889991 >500 0.25315278127590457 13.34453045109028 >1k 0.02383020724152444 2.4416207032754396 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 0.0 0.0 10 0.0 0.0 0.0 0.0 0.0 11 0.004985626633384591 0.0 0.0 0.0 0.0 12 0.010333337882601584 0.0 0.0 0.0 0.0 13 0.01930189529014258 0.0 0.0 0.0 0.0 14 0.057794275219402384 0.0 0.0 0.0 0.0 15 0.0841428941868986 0.0 0.0 0.0 0.0 16 0.10065952320140734 0.0 0.0 0.0 0.0 17 0.11135494569984132 0.0 0.0 0.0 0.0 18 0.12837292264396416 0.0 0.0 0.0 0.0 19 0.14182575875527564 0.0 0.0 0.0 0.0 20 0.15859306173459142 0.0 0.0 0.0 0.0 21 0.17742146175787624 0.0 0.0 0.0 0.0 22 0.1956928085260343 0.0 0.0 0.0 0.0 23 0.2144933558865628 0.0 0.0 0.0 0.0 24 0.23499291567522793 0.0 0.0 0.0 0.0 25 0.2562723500210705 0.0 0.0 0.0 0.0 26 0.28036490330530334 0.0 0.0 0.0 0.0 27 0.3052094784839573 0.0 0.0 0.0 0.0 28 0.33044399094119997 0.0 0.0 0.0 0.0 29 0.36021848742772583 0.0 0.0 0.0 0.0 30 0.39946288925140677 0.0 0.0 0.0 0.0 31 0.43366595911619044 0.0 0.0 0.0 0.0 32 0.4661421638900811 0.0 0.0 0.0 0.0 33 0.4893712846288674 0.0 0.0 0.0 0.0 34 0.5123497314028467 0.0 0.0 0.0 0.0 35 0.5336291657486893 0.0 0.0 0.0 0.0 36 0.5539059042353037 0.0 0.0 0.0 0.0 37 0.574823253965314 0.0 0.0 0.0 0.0 38 0.5983030486689073 0.0 0.0 0.0 0.0 39 0.6226741285807035 0.0 0.0 0.0 0.0 40 0.6509445812783871 0.0 0.0 0.0 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGAACTA 30 1.862516E-6 46.0 30 CGTATAT 20 6.3132547E-4 46.0 25 TTATGCG 30 1.862516E-6 46.0 21 TAACGTA 30 1.862516E-6 46.0 43 CCGTATA 20 6.3132547E-4 46.0 24 CCGTAAA 30 1.862516E-6 46.0 46 CGTACAC 45 3.110472E-10 46.0 40 TCGTAAT 25 3.418616E-5 46.0 34 ACGTCGA 25 3.418616E-5 46.0 26 CATAACG 25 3.418616E-5 46.0 19 CGTAAAC 40 5.6170393E-9 46.0 38 ATACGTA 25 3.418616E-5 46.0 17 ATACGCT 55 1.8189894E-12 46.0 26 TTCGATA 25 3.418616E-5 46.0 30 TCGGTAC 25 3.418616E-5 46.0 36 TACGTTG 25 3.418616E-5 46.0 46 GTACGTT 30 1.862516E-6 46.0 20 CTAATAG 30 1.862516E-6 46.0 43 TACGTAC 20 6.3132547E-4 46.0 18 TAATCGC 45 3.110472E-10 46.0 18 >>END_MODULE