##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1527890_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 2529976 Sequences flagged as poor quality 0 Sequence length 52 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.027063497835556 33.0 31.0 33.0 31.0 34.0 2 31.16039598794613 31.0 31.0 33.0 30.0 33.0 3 31.91989647332623 31.0 31.0 34.0 30.0 34.0 4 36.323807419517024 37.0 37.0 37.0 35.0 37.0 5 36.18574010188239 37.0 37.0 37.0 35.0 37.0 6 36.24622921324155 37.0 37.0 37.0 35.0 37.0 7 36.61809598193817 37.0 37.0 37.0 35.0 37.0 8 36.66368613773411 37.0 37.0 37.0 35.0 37.0 9 38.52348204093636 39.0 39.0 39.0 37.0 39.0 10 37.929695380509536 39.0 38.0 39.0 35.0 39.0 11 37.15926079931193 39.0 35.0 39.0 34.0 39.0 12 37.03881183062606 39.0 37.0 39.0 33.0 39.0 13 36.960972752310695 39.0 37.0 39.0 33.0 39.0 14 37.77120454897596 40.0 37.0 40.0 33.0 40.0 15 37.838460522945674 40.0 37.0 40.0 33.0 40.0 16 37.87315057534143 40.0 37.0 40.0 34.0 40.0 17 37.784247755709934 40.0 37.0 40.0 33.0 40.0 18 37.7573799119043 40.0 37.0 40.0 33.0 40.0 19 37.74012559802939 40.0 37.0 40.0 34.0 40.0 20 37.726280407403074 40.0 37.0 40.0 33.0 40.0 21 37.7100604906924 40.0 36.0 40.0 33.0 40.0 22 37.72146217987839 40.0 36.0 40.0 33.0 40.0 23 37.71136485089187 40.0 36.0 40.0 34.0 40.0 24 37.60127408323241 40.0 36.0 40.0 34.0 40.0 25 37.49307779994751 40.0 36.0 40.0 34.0 40.0 26 37.30376849424658 40.0 35.0 40.0 33.0 40.0 27 37.17524751222936 40.0 35.0 40.0 33.0 40.0 28 37.06418519385164 39.0 35.0 40.0 33.0 40.0 29 37.00050593365312 39.0 35.0 40.0 33.0 40.0 30 36.815013264947964 39.0 35.0 40.0 32.0 40.0 31 36.70556440061092 39.0 35.0 40.0 32.0 40.0 32 36.53875530835075 39.0 35.0 40.0 31.0 40.0 33 36.425755817446486 39.0 35.0 40.0 31.0 40.0 34 36.17495976246415 39.0 35.0 40.0 30.0 40.0 35 35.98025752022944 39.0 35.0 40.0 30.0 40.0 36 35.97603929839651 38.0 35.0 40.0 30.0 40.0 37 35.784786891259046 38.0 35.0 40.0 30.0 40.0 38 35.6571311348408 38.0 35.0 40.0 29.0 40.0 39 35.51839661720111 38.0 35.0 40.0 29.0 40.0 40 35.30031154445734 38.0 35.0 40.0 27.0 40.0 41 35.159065145282014 38.0 34.0 40.0 27.0 40.0 42 35.05697010564527 38.0 34.0 40.0 27.0 40.0 43 34.95786718925397 38.0 34.0 40.0 26.0 40.0 44 34.87140668528081 38.0 34.0 40.0 26.0 40.0 45 34.75012134502462 38.0 34.0 40.0 25.0 40.0 46 34.61060500178658 37.0 34.0 40.0 24.0 40.0 47 34.470242405461555 37.0 34.0 40.0 24.0 40.0 48 34.32388923847499 37.0 33.0 40.0 23.0 40.0 49 34.593192978905726 37.0 34.0 40.0 25.0 40.0 50 34.61925132886636 37.0 34.0 40.0 25.0 40.0 51 34.60183258655418 37.0 34.0 40.0 25.0 40.0 52 34.149994308246406 36.0 34.0 40.0 24.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 1.0 13 2.0 14 10.0 15 30.0 16 92.0 17 205.0 18 505.0 19 1102.0 20 1977.0 21 3691.0 22 6025.0 23 9990.0 24 14177.0 25 19780.0 26 27152.0 27 36101.0 28 41437.0 29 43272.0 30 46485.0 31 56925.0 32 74752.0 33 107982.0 34 220249.0 35 170573.0 36 210787.0 37 329063.0 38 793721.0 39 313890.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 100.0 0.0 0.0 0.0 2 0.0 0.0 100.0 0.0 3 0.0 100.0 0.0 0.0 4 0.0 100.0 0.0 0.0 5 0.0 0.0 100.0 0.0 6 100.0 0.0 0.0 0.0 7 99.27940027889592 0.5124949801895354 0.1579856884017872 0.05011905251275111 8 98.07974462998858 1.5964183059444044 0.16877630459735588 0.15506075946965506 9 90.75161187299801 4.351938516412804 3.208172725749177 1.688276884840014 10 39.15882996518544 46.863408980954766 6.330771517200164 7.646989536659636 11 31.1886357815252 26.3913965982286 25.382572799109553 17.037394821136644 12 30.241709802780736 21.60613381312708 25.300872419343108 22.851283964749072 13 25.066285213772776 21.567358741743003 27.756785044601212 25.609570999883 14 24.250190515641254 24.25766094223819 28.437582016588298 23.05456652553226 15 26.017480007715488 24.682210424130506 26.49677309191866 22.803536476235347 16 29.473560223496193 25.769216783084108 23.814336578686913 20.94288641473279 17 27.97821006997695 26.788633568065467 23.02017884754638 22.212977514411204 18 27.86556078002321 25.758900479688347 23.971334115422437 22.404204624866004 19 26.3910013375621 27.391880397284403 24.34141667747046 21.875701587683043 20 27.893110448478563 27.90164807887506 23.335913067950052 20.86932840469633 21 26.85460257330504 26.914879824946958 25.396920761303665 20.833596840444336 22 25.744117730761083 25.50391782372639 26.015780386849517 22.736184058663007 23 25.336959718194958 26.147797449461972 26.82606475318343 21.689178079159642 24 26.010918680651518 27.67125063636967 23.987935063415623 22.32989561956319 25 25.35118910218911 27.85429585102784 22.71345657033901 24.081058476444046 26 25.50312730239338 28.227066185608084 23.69069904220435 22.57910746979418 27 24.520469759396928 25.396367396370557 23.837103593077565 26.246059251154954 28 24.385883502452195 28.191374147422742 23.56887970478771 23.853862645337347 29 27.86556078002321 26.62254503600034 23.306466148295478 22.20542803568097 30 25.917281428756638 25.764315550819454 24.374460469190222 23.94394255123369 31 27.74986798293739 26.8191476915196 23.287296005970017 22.143688319572995 32 28.654619648565838 26.53811735763501 23.980741319285244 20.82652167451391 33 29.21415064806939 25.82913830012617 23.688367004271978 21.268344047532466 34 26.0001675905226 26.71155773809712 26.06048436823116 21.22779030314912 35 24.431496583366798 29.17015813588745 26.51400645697825 19.884338823767497 36 25.585222942826334 29.514193020012836 23.606271363839024 21.2943126733218 37 26.951520488731912 28.68201121275459 23.008004819018048 21.358463479495455 38 27.15448684098189 27.879908742217317 23.549156197529147 21.416448219271643 39 26.97899110505396 26.30060522313255 22.94306349151138 23.777340180302104 40 26.35376778277739 26.05404161936714 23.161682166154936 24.430508431700538 41 24.231178477582397 27.134249494856867 24.086117812975303 24.548454214585437 42 24.28070463909539 26.21151346890247 24.271574117699142 25.236207774302997 43 23.874218569662318 25.6411523271367 25.065020379639964 25.419608723561016 44 24.65272397840928 25.586962089758952 24.376832033189245 25.38348189864252 45 25.659215739595947 24.334697246139882 25.08901270209678 24.91707431216739 46 25.04367630364873 26.475784750527275 24.149043311082792 24.3314956347412 47 24.615371845424622 26.049733278102245 24.913912226835354 24.420982649637782 48 25.535933937713246 25.322414125667596 24.761302083498023 24.380349853121135 49 25.95838853807309 25.149131849472088 25.016600947993183 23.875878664461638 50 24.147106533816924 25.663286924460945 25.36925251464836 24.820354027073773 51 22.821797519027847 26.12933877633622 25.789137920675927 25.259725783960008 52 23.87868501519382 25.66202209032813 25.769098204884155 24.690194689593895 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 17.0 4 34.0 5 99.5 6 165.0 7 1422.0 8 2679.0 9 6604.0 10 10529.0 11 8466.5 12 6404.0 13 7384.0 14 7750.5 15 7137.0 16 8044.5 17 8952.0 18 9747.0 19 10542.0 20 11267.0 21 11992.0 22 14356.5 23 16721.0 24 20296.5 25 23872.0 26 27274.5 27 30677.0 28 34156.5 29 37636.0 30 42632.5 31 47629.0 32 51530.5 33 55432.0 34 57280.0 35 59128.0 36 64978.5 37 70829.0 38 77482.0 39 88264.5 40 92394.0 41 96111.0 42 99828.0 43 106605.0 44 113382.0 45 112836.5 46 112291.0 47 120245.0 48 128199.0 49 132836.0 50 137473.0 51 147210.0 52 156947.0 53 161792.5 54 166638.0 55 176144.5 56 185651.0 57 184325.0 58 182999.0 59 177676.5 60 172354.0 61 164005.0 62 155656.0 63 129475.0 64 94095.0 65 84896.0 66 66308.0 67 47720.0 68 39643.0 69 31566.0 70 29134.0 71 26702.0 72 23452.0 73 20202.0 74 15279.5 75 10357.0 76 7746.0 77 5135.0 78 3662.0 79 2189.0 80 1603.5 81 1018.0 82 587.0 83 156.0 84 95.5 85 35.0 86 29.0 87 23.0 88 17.5 89 6.5 90 1.0 91 1.0 92 1.0 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 52 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 52 2529976.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 11.875690415470272 #Duplication Level Percentage of deduplicated Percentage of total 1 74.34761985256641 8.829293164961502 2 8.643988722763952 2.0530666805272197 3 3.4457368948493965 1.2276151384918583 4 1.7696086818429206 0.840612994483798 5 1.0138341502174888 0.601999025030714 6 0.6336256573780883 0.45148452877926076 7 0.39749257307929314 0.33043491182368645 8 0.318404854491157 0.3025021982975871 9 0.2486901787723027 0.26580308152210413 >10 4.307091950433661 14.406510805379177 >50 3.1347687063127725 26.44042836719046 >100 1.6650541623288568 34.35189505157702 >500 0.05481523080280499 4.245775744173392 >1k 0.017607316560900997 3.689217222535974 >5k 6.644270400339999E-4 0.5445649162941294 >10k+ 9.96640560051E-4 1.4187961689320787 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GTAATGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTC 14153 0.5594124213036014 No Hit GTAATGGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCT 11755 0.464628913475859 No Hit GTAATGGGGGATGCCGACTGGCGATGCGGCGGCGTTATTCCCATGACCCGCC 10054 0.39739507410346975 No Hit GTAATGGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 8093 0.3198844574019674 No Hit GTAATGGGGGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAA 5710 0.22569384057398173 No Hit GTAATGGGGGGGCTGGTGAGATGGCTCAGTGGGTTAGAGCACCCGACTGCTC 4866 0.1923338403210149 No Hit GTAATGGGGAAGCAGTGGTATCAACGCAGAGTGCAGTGCTGTAATGGGGAAG 3641 0.14391440867423247 No Hit GTAATGGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCTGACTGCT 3411 0.13482341334463252 No Hit GTAATGGGGGAGTCCCGCCCGGGAGCCGGCAGGGAGCGGAGCTGTGGAGCCT 3363 0.13292616214541167 No Hit GTAATGGGGGAATCCGCAGCGGCTTCTGAGCAGATCAGACTCTCCTCGTTCG 3247 0.12834113841396125 No Hit GTAATGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGTTC 3079 0.12170075921668821 No Hit GTAATGGGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGC 2894 0.1143884368863578 No Hit GTAATGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCTGACTGCTC 2802 0.11075203875451783 No Hit GTAATGGGGAACAGACACTGTTGACTTTGCAACTAAGTTATGACCTGGTACG 2688 0.10624606715636828 No Hit GTAATGGGGCGCGACCTCAGATCAGACGTGGCGACCCGCTGAATTTAAGCAT 2638 0.10426976382384655 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.11320265488684478 0.0 0.0 0.0 0.0 8 0.1522544087374742 0.0 0.0 0.0 0.0 9 0.20680038071507398 0.0 0.0 0.0 0.0 10 0.29431109227913627 0.0 0.0 0.0 0.0 11 0.343125784592423 0.0 0.0 0.0 0.0 12 0.3739165905131116 0.0 0.0 0.0 0.0 13 0.392138107238962 0.0 0.0 0.0 0.0 14 0.4220988657599914 0.0 0.0 0.0 0.0 15 0.45569602241286083 0.0 0.0 0.0 0.0 16 0.49190189946465895 0.0 0.0 0.0 0.0 17 0.5237203831182589 0.0 0.0 0.0 0.0 18 0.557119909437876 0.0 0.0 0.0 0.0 19 0.5973179192213681 0.0 0.0 0.0 0.0 20 0.6358558342055419 0.0 0.0 0.0 0.0 21 0.6751447444560739 0.0 0.0 0.0 0.0 22 0.7132083466404424 0.0 0.0 0.0 0.0 23 0.7573984891556284 0.0 0.0 0.0 0.0 24 0.801114318871009 0.0 0.0 0.0 0.0 25 0.8386245561222715 0.0 0.0 0.0 0.0 26 0.8782692009726575 0.0 0.0 0.0 0.0 27 0.9109967841592174 0.0 0.0 0.0 0.0 28 0.9483093910772276 0.0 0.0 0.0 0.0 29 0.9726574481338953 0.0 0.0 0.0 0.0 30 1.0017091071219648 0.0 0.0 0.0 0.0 31 1.0214326143805317 0.0 0.0 0.0 0.0 32 1.0416304344389038 0.0 0.0 0.0 0.0 33 1.0596147947648515 0.0 0.0 0.0 0.0 34 1.079298775956768 0.0 0.0 0.0 0.0 35 1.1099314776108549 0.0 0.0 0.0 0.0 36 1.1298921412693244 0.0 0.0 0.0 0.0 37 1.1506433262608025 0.0 0.0 0.0 0.0 38 1.168509108386799 0.0 0.0 0.0 0.0 39 1.1875606725123085 0.0 0.0 0.0 0.0 40 1.2059007674381101 0.0 0.0 0.0 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GATACGC 20 6.3128996E-4 46.0 14 ATCGTAC 20 6.3128996E-4 46.0 25 CATAACG 30 1.8622959E-6 46.0 44 TTCGCGA 20 6.3128996E-4 46.0 17 AATCGGT 20 6.3128996E-4 46.0 40 CTAGGCG 45 3.110472E-10 45.999996 23 AATGGGG 233710 0.0 44.117367 3 GTAATGG 261670 0.0 44.11373 1 TAATGGG 257095 0.0 44.10432 2 ATGGGGA 109215 0.0 44.045692 4 ATGGGGG 93965 0.0 43.978184 4 TATCGTA 85 0.0 43.294117 35 TGGGGGG 35740 0.0 43.232796 5 TGGGGAG 29500 0.0 43.091866 5 TGGGGAC 18150 0.0 42.88264 5 ATGGGGT 13320 0.0 42.874622 4 ATGGGGC 18585 0.0 42.868977 4 TGGGGAT 36795 0.0 42.793316 5 TGGGGGA 24305 0.0 42.754166 5 AATCCCG 70 0.0 42.714283 36 >>END_MODULE