##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1527876_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 473038 Sequences flagged as poor quality 0 Sequence length 50 %GC 56 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 27.82908349857728 31.0 31.0 34.0 3.0 34.0 2 30.19693555274629 34.0 31.0 34.0 16.0 34.0 3 32.17770031160288 34.0 31.0 34.0 28.0 34.0 4 35.62403020476156 37.0 35.0 37.0 33.0 37.0 5 36.065603609012385 37.0 35.0 37.0 35.0 37.0 6 36.30082149848427 37.0 36.0 37.0 35.0 37.0 7 36.43290179647301 37.0 37.0 37.0 35.0 37.0 8 36.552970374473084 37.0 37.0 37.0 35.0 37.0 9 38.54806379191524 39.0 39.0 39.0 37.0 39.0 10 37.88964945733746 39.0 38.0 39.0 35.0 39.0 11 37.85038199890918 39.0 38.0 39.0 35.0 39.0 12 37.6450707976949 39.0 37.0 39.0 35.0 39.0 13 37.38080238796883 39.0 37.0 39.0 35.0 39.0 14 38.30413624275428 40.0 38.0 40.0 35.0 40.0 15 38.41325432629091 40.0 38.0 40.0 35.0 40.0 16 37.78848422325479 40.0 38.0 40.0 33.0 40.0 17 38.17803009483382 40.0 38.0 40.0 34.0 40.0 18 38.20873798722302 40.0 38.0 40.0 34.0 40.0 19 37.40613650488967 40.0 37.0 40.0 32.0 40.0 20 37.74128294132818 40.0 37.0 40.0 33.0 40.0 21 37.9262638519527 40.0 38.0 40.0 33.0 40.0 22 37.93146005183516 40.0 38.0 40.0 34.0 40.0 23 37.888106240936246 40.0 38.0 40.0 34.0 40.0 24 37.88946342577129 40.0 38.0 40.0 34.0 40.0 25 37.64453384294708 40.0 37.0 40.0 33.0 40.0 26 37.322058692959125 40.0 37.0 40.0 32.0 40.0 27 37.210921744130495 40.0 37.0 40.0 32.0 40.0 28 36.964148757605095 39.0 36.0 40.0 31.0 40.0 29 37.124691885218525 40.0 37.0 40.0 31.0 40.0 30 37.007561760365974 40.0 36.0 40.0 31.0 40.0 31 37.00415400031287 40.0 36.0 40.0 31.0 40.0 32 36.35464381297063 40.0 35.0 40.0 30.0 40.0 33 36.403587026835055 40.0 35.0 40.0 30.0 40.0 34 36.00295747910316 40.0 35.0 40.0 27.0 40.0 35 36.227795652780536 40.0 35.0 40.0 30.0 40.0 36 35.932419805597014 39.0 35.0 40.0 27.0 40.0 37 35.361292327466295 39.0 35.0 40.0 25.0 40.0 38 35.329685987172276 39.0 35.0 40.0 25.0 40.0 39 35.25260761291905 39.0 35.0 40.0 24.0 40.0 40 34.748618504221646 39.0 35.0 40.0 22.0 40.0 41 34.59399667679975 39.0 34.0 40.0 21.0 40.0 42 34.57219927363129 38.0 34.0 40.0 22.0 40.0 43 34.44602970585873 38.0 34.0 40.0 22.0 40.0 44 33.89925333694122 38.0 33.0 40.0 15.0 40.0 45 33.91675298813203 37.0 33.0 40.0 18.0 40.0 46 33.8248449384616 37.0 33.0 40.0 18.0 40.0 47 33.88618884740761 37.0 33.0 40.0 20.0 40.0 48 33.67478088441098 37.0 33.0 40.0 20.0 40.0 49 33.54455667409383 36.0 33.0 40.0 20.0 40.0 50 32.75081917308969 36.0 32.0 40.0 13.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 0.0 13 1.0 14 4.0 15 3.0 16 15.0 17 21.0 18 42.0 19 110.0 20 254.0 21 577.0 22 1105.0 23 1971.0 24 3095.0 25 4368.0 26 5756.0 27 7423.0 28 9530.0 29 11472.0 30 12604.0 31 13867.0 32 14916.0 33 17460.0 34 24054.0 35 30841.0 36 42552.0 37 82027.0 38 124530.0 39 64439.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 0.0 100.0 0.0 0.0 2 100.0 0.0 0.0 0.0 3 100.0 0.0 0.0 0.0 4 0.0 100.0 0.0 0.0 5 0.0 0.0 0.0 100.0 6 0.0 0.0 100.0 0.0 7 99.12501744045933 0.5291329660619232 0.28073854531771236 0.06511104816103569 8 98.56692274193617 0.9751859258664208 0.25346800891260324 0.20442332328481008 9 96.23962556919318 2.1793175178315485 0.8760395570757529 0.7050173558995261 10 43.853770733006655 36.37593597131731 5.6299916708594235 14.140301624816612 11 25.889252026264277 34.37081164726724 18.160697449253547 21.579238877214937 12 34.60144850942208 16.874965647580108 26.53127232907293 21.992313513924884 13 19.638168603790813 20.429436958553012 24.869249404910388 35.06314503274579 14 25.6619975562217 28.384189008071232 24.348783818636136 21.605029617070933 15 38.89116730579784 16.942402090318325 22.331821122193144 21.834609481690688 16 27.394205116713664 20.44106393143891 32.03484709473658 20.129883857110844 17 38.6643356347693 16.856785289976703 17.94697254766002 26.53190652759398 18 38.44088635585302 18.093049607008314 23.66575201146631 19.800312025672355 19 30.90301413417104 16.717473014852928 31.265564288704077 21.113948562271954 20 29.00591495820632 30.281288184035954 20.660496619721883 20.052300238035844 21 30.10286700011416 17.243646387816625 32.612179148398226 20.041307463670996 22 26.950266151979335 19.266528270456075 19.2591292877105 34.524076289854094 23 24.951906612153778 32.43143256989925 18.99340010739095 23.623260710556025 24 24.511561439038722 32.09805554733446 19.51978487986166 23.870598133765153 25 24.670745267822035 21.290889949644637 17.654818428963424 36.3835463535699 26 36.23176150753216 19.610686667878692 19.4698945962058 24.687657228383344 27 26.1378578465155 17.659892017131813 19.952308271217113 36.24994186513557 28 25.396902574423198 32.34010798286818 19.26737386848414 22.99561557422448 29 38.12991768103197 20.299426261737956 17.654607029456407 23.916049027773667 30 26.98874086225631 30.354855212477645 19.648527179634616 23.007876745631428 31 37.165724529530394 21.323445473725155 19.368422832837954 22.142407163906494 32 28.43196529665693 20.45670749495812 29.79380092085625 21.3175262875287 33 38.390784672690145 19.27900084137004 20.26856193371357 22.06165255222625 34 26.837378815232604 23.072564994778432 19.054705964425693 31.035350225563274 35 27.024890177956106 32.63860408677527 21.02769756340928 19.308808171859344 36 35.566275859444694 23.15543360152884 19.265894071935026 22.01239646709144 37 27.725045345194253 24.11328476781992 26.743094635103308 21.418575251882512 38 36.874416008861864 21.596785036297295 19.46228421395321 22.066514740887623 39 26.538037113297452 21.18540159564348 20.429859757567044 31.846701533492023 40 26.75472160798921 22.235634346500703 27.642810936964896 23.36683310854519 41 26.655363839691525 28.604044495368235 21.783450800992732 22.957140863947505 42 33.131587737137394 22.376215018666574 20.716094690067184 23.776102554128844 43 34.2746248715748 20.948211348771135 22.239650937134016 22.53751284252005 44 26.3693403066984 26.937370782051335 22.25212350804798 24.44116540320228 45 24.140555304225032 21.09280861157032 21.942846029283057 32.823790054921595 46 24.76968023710569 20.83976340167175 29.411379212663675 24.97917714855889 47 33.4975202837827 21.728275529661463 21.988719722305607 22.78548446425023 48 35.29039950278836 21.161724850857645 21.33190145400581 22.215974192348185 49 33.67868966129571 20.669163999509554 22.826707368118416 22.82543897107632 50 26.34629776043362 27.605604623730017 21.192166379868002 24.855931235968356 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 20.5 6 41.0 7 32.5 8 24.0 9 56.0 10 88.0 11 355.0 12 622.0 13 656.0 14 690.0 15 925.5 16 1161.0 17 838.0 18 515.0 19 648.5 20 782.0 21 870.0 22 958.0 23 1066.0 24 1174.0 25 1447.0 26 1720.0 27 1834.5 28 1949.0 29 2492.5 30 3036.0 31 3433.0 32 3830.0 33 3987.0 34 4144.0 35 4660.0 36 5176.0 37 6096.5 38 7017.0 39 7235.5 40 7454.0 41 8017.5 42 8581.0 43 8515.5 44 8450.0 45 10427.5 46 12405.0 47 13100.0 48 13795.0 49 14270.0 50 14745.0 51 18765.5 52 22786.0 53 27872.5 54 32959.0 55 45019.0 56 57079.0 57 55523.5 58 53968.0 59 49272.5 60 44577.0 61 43506.5 62 42436.0 63 38640.0 64 34844.0 65 32281.5 66 29719.0 67 24135.5 68 18552.0 69 15728.0 70 12904.0 71 10982.0 72 9060.0 73 7488.0 74 5916.0 75 5990.0 76 6064.0 77 4318.0 78 2572.0 79 1760.0 80 948.0 81 544.0 82 140.0 83 94.0 84 48.0 85 35.0 86 22.0 87 33.0 88 44.0 89 43.5 90 43.0 91 21.5 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 473038.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 16.254508094487125 #Duplication Level Percentage of deduplicated Percentage of total 1 75.94745740668488 12.344885611726754 2 9.351020939003773 3.039924910895108 3 3.5011054753544024 1.7072624186640395 4 1.7089348419820523 1.1111158088779338 5 0.9351020939003772 0.759981227723777 6 0.5423332032774093 0.5289215665549069 7 0.4018728053062817 0.4572571336763642 8 0.30823253999219663 0.40081346530299894 9 0.2197945116400052 0.32153865017186783 >10 3.783326830537131 16.835222540261036 >50 2.201846794121472 24.993975114050034 >100 1.0612563402262973 29.011834144402776 >500 0.026011184809468072 2.6651135849551197 >1k 0.010404473923787228 2.5391194787733755 >5k 0.0 0.0 >10k+ 0.0013005592404734035 3.28303434396391 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source AGGACTGGGAAGCAGTGGTATCAACGCAGAGTGCAGTGCTAGGACTGGGA 15530 3.28303434396391 No Hit AGGACTGGGGAATCCGCAGCGGCTTCTGAGCAGATCAGACTCTCCTCGTT 3169 0.669925037734812 No Hit AGGACTGGGAAGCAGTGGTATCAACGCAGAGTGCAGTGCTAGGACTGGGC 1699 0.359167762420778 No Hit AGGACTGGGAAGCAGTGGTATCAACGCAGAGTGCAGTGCTAGGACTGGGG 1379 0.2915199201755462 No Hit AGGACTGGGAAGCAGTGGTATCAACGCAGATCGGAAGAGCTCGTATGCCG 1248 0.26382658475640436 Illumina Single End Adapter 2 (100% over 23bp) AGGACTGGGAATCCGCAGCGGCTTCTGAGCAGATCAGACTCTCCTCGTTC 1152 0.2435322320828348 No Hit AGGACTGGGAGTCCCGCCCGGGAGCCGGCAGGGAGCGGAGCTGTGGAGCC 1140 0.2409954379986386 No Hit AGGACTGGGGAGTCCCGCCCGGGAGCCGGCAGGGAGCGGAGCTGTGGAGC 1120 0.2367674478583116 No Hit AGGACTGGGGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGC 1104 0.23338505574604998 No Hit AGGACTGGGGCTAGGACTGGGAAGCAGTGGTATCAACGCAGAGTGCAGTG 797 0.16848540709203066 No Hit AGGACTGGGGATAGTAGAGGCCACAGGAAGACCGTCGTGGAGAAGCCCCG 777 0.16425741695170365 No Hit AGGACTGGGGGACAATCCGCAGCGGCTTCTGAGCAGATCAGACTCTCCTC 744 0.15728123322016413 No Hit AGGACTGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTG 721 0.1524190445587881 No Hit AGGACTGGGGTCTCTTGCTGCAGCAACGAGAGTGGGAGCACCTGGAGCGC 719 0.15199624554475538 No Hit AGGACTGGGGACAATCCGCAGCGGCTTCTGAGCAGATCAGACTCTCCTCG 700 0.14797965491144474 No Hit AGGACTGGGAAGCAGTGGTATCAACGCAGAGTGCAGATCGGAAGAGCTCG 678 0.14332886575708506 No Hit AGGACTGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTCTGTGA 655 0.138466677095709 No Hit AGGACTGGGAGCCTCGCTTGTCAAGGAAAGTATACCCCAAGTGGCCAGTC 613 0.1295878978010223 No Hit AGGACTGGGAAGCAGTGGTATCAACGCAGAGATCGGAAGAGCTCGTATGC 599 0.12662830470279343 Illumina Single End Adapter 2 (100% over 21bp) AGGACTGGGAAGCAGTGGTATCAACGCAGGATCGGAAGAGCTCGTATGCC 590 0.12472570913964627 Illumina Single End Adapter 2 (95% over 22bp) AGGACTGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGC 584 0.12345731209754819 No Hit AGGACTGGGAAGCAGTGGTATCAACAGATCGGAAGAGCTCGTATGCCGTC 574 0.1213433170273847 Illumina Single End Adapter 2 (100% over 25bp) AGGACTGGGGGCTTTGCAGACGCCACTGTCGCTTTTCGCCGCTTGCTGCA 571 0.12070911850633563 No Hit AGGACTGGGGCTCGGTCTTAGCGCCATCTTCCTTGAGACTCCTGCGCCAT 570 0.1204977189993193 No Hit AGGACTGGGTCGGGCCTGGGGCCTTGTCCAAGGTGCCAATGATGCGGGCC 566 0.11965212097125388 No Hit AGGACTGGGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCA 558 0.1179609249151231 No Hit AGGACTGGGGGTAATGCACTTTGGATGGGAAGAAAATGTACGTGCTTTTC 558 0.1179609249151231 No Hit AGGACTGGGAAGCAGTGGTATCAACGCAGAGTGCAGTGCTAGGACTGGGT 518 0.10950494463446911 No Hit AGGACTGGGAAGCAGATCGGAAGAGCTCGTATGCCGTCTTCTGCTTGAAA 515 0.10887074611342007 Illumina Single End Adapter 2 (100% over 34bp) AGGACTGGGAGAGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGA 483 0.10210596188889687 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0314985265454361 0.0 0.0 0.0 0.0 8 0.04756488907867867 0.0 0.0 0.0 0.0 9 0.06574524668208474 0.0 0.0 0.0 0.0 10 0.17165639969727592 0.0 0.0 0.0 0.0 11 0.29067432214748073 0.0 0.0 0.0 0.0 12 0.3462723924927807 0.0 0.0 0.0 0.0 13 0.40948084509066923 0.0 0.0 0.0 0.0 14 0.553866708382836 0.0 0.0 0.0 0.0 15 0.6189777565438718 0.0 0.0 0.0 0.0 16 0.6976183731539538 0.0 0.0 0.0 0.0 17 0.7783729848341994 0.0 0.0 0.0 0.0 18 0.847077824614513 0.0 0.0 0.0 0.0 19 0.8992935028475514 0.0 0.0 0.0 0.0 20 0.9586967643191456 0.0 0.0 0.0 0.0 21 0.9925206854417615 0.0 0.0 0.0 0.0 22 1.0498099518431923 0.0 0.0 0.0 0.0 23 1.1210515857077021 0.0 0.0 0.0 0.0 24 1.2066683860493237 0.0 0.0 0.0 0.0 25 1.265437448999869 0.0 0.0 0.0 0.0 26 1.4506234171461911 0.0 0.0 0.0 0.0 27 1.555688972133317 0.0 0.0 0.0 0.0 28 1.8928711858243947 0.0 0.0 0.0 0.0 29 1.9856755694045722 0.0 0.0 0.0 0.0 30 2.167479145438633 0.0 0.0 0.0 0.0 31 2.221386019727802 0.0 0.0 0.0 0.0 32 2.3256059766868624 0.0 0.0 0.0 0.0 33 2.3995958041425847 0.0 0.0 0.0 0.0 34 2.490497592159615 0.0 0.0 0.0 0.0 35 2.8209150216261696 0.0 0.0 0.0 0.0 36 2.8989214397152026 0.0 0.0 0.0 0.0 37 2.9866522351269875 0.0 0.0 0.0 0.0 38 3.0591622660335958 0.0 0.0 0.0 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TAATCAC 20 7.851777E-4 44.000004 18 CTAGAAA 40 8.294592E-9 44.000004 21 AACCGAA 20 7.851777E-4 44.000004 42 CGGCGCA 20 7.851777E-4 44.000004 12 CTCGTCA 20 7.851777E-4 44.000004 20 TTTACGT 20 7.851777E-4 44.000004 12 AAATACG 20 7.851777E-4 44.000004 42 CCCTATC 20 7.851777E-4 44.000004 39 TAGACGG 20 7.851777E-4 44.000004 24 ACACCGT 20 7.851777E-4 44.000004 21 CGGTTAC 20 7.851777E-4 44.000004 19 CGTTGAA 20 7.851777E-4 44.000004 22 ATTACCT 20 7.851777E-4 44.000004 42 ATTACAC 20 7.851777E-4 44.000004 19 CCAATCC 20 7.851777E-4 44.000004 40 GAATCGT 20 7.851777E-4 44.000004 13 GCAAAAC 20 7.851777E-4 44.000004 37 CGTCTAC 20 7.851777E-4 44.000004 11 TTGTACC 20 7.851777E-4 44.000004 33 AATGGGT 20 7.851777E-4 44.000004 16 >>END_MODULE