##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1527864_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 293925 Sequences flagged as poor quality 0 Sequence length 50 %GC 58 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.53332312664796 34.0 31.0 34.0 31.0 34.0 2 32.95069830739134 34.0 31.0 34.0 31.0 34.0 3 32.96617164242579 34.0 31.0 34.0 31.0 34.0 4 36.41335714893255 37.0 37.0 37.0 35.0 37.0 5 36.23893170026367 37.0 37.0 37.0 35.0 37.0 6 36.19931615207961 37.0 37.0 37.0 35.0 37.0 7 36.479271923109636 37.0 37.0 37.0 35.0 37.0 8 36.60996512715829 37.0 37.0 37.0 35.0 37.0 9 38.64298375435911 39.0 39.0 39.0 38.0 39.0 10 37.98241728332057 39.0 38.0 39.0 35.0 39.0 11 37.84383771370248 39.0 38.0 39.0 35.0 39.0 12 37.262879986391084 39.0 37.0 39.0 35.0 39.0 13 36.94145105043804 39.0 37.0 39.0 33.0 39.0 14 37.83089903887046 40.0 37.0 40.0 33.0 40.0 15 37.83114399931956 40.0 37.0 40.0 33.0 40.0 16 37.48009866462533 39.0 36.0 40.0 33.0 40.0 17 37.611826146125715 39.0 37.0 40.0 33.0 40.0 18 37.488597431317515 39.0 36.0 40.0 33.0 40.0 19 36.707734966402995 39.0 35.0 40.0 31.0 40.0 20 36.91215105894361 39.0 35.0 40.0 32.0 40.0 21 36.94786425108446 39.0 35.0 40.0 32.0 40.0 22 36.948469847750275 39.0 35.0 40.0 32.0 40.0 23 36.80320489920898 38.0 35.0 40.0 32.0 40.0 24 36.725913073062856 38.0 35.0 40.0 32.0 40.0 25 36.54687760483117 38.0 35.0 40.0 32.0 40.0 26 36.22663604661053 38.0 35.0 40.0 31.0 40.0 27 36.019457344560685 38.0 35.0 40.0 31.0 40.0 28 35.69150293442205 37.0 34.0 40.0 30.0 40.0 29 35.77148252105129 37.0 35.0 40.0 30.0 40.0 30 35.733809645317685 37.0 35.0 40.0 30.0 40.0 31 35.7128178957217 37.0 35.0 40.0 31.0 40.0 32 35.1230007655014 36.0 34.0 40.0 29.0 40.0 33 35.182339032066004 36.0 35.0 40.0 29.0 40.0 34 34.75281449349324 35.0 34.0 40.0 28.0 40.0 35 34.74806838479204 35.0 34.0 39.0 28.0 40.0 36 34.510565620481415 35.0 34.0 39.0 28.0 40.0 37 34.14927277366675 35.0 34.0 39.0 26.0 40.0 38 34.073906608828786 35.0 34.0 39.0 26.0 40.0 39 33.8646321340478 35.0 34.0 39.0 26.0 40.0 40 33.54647614187293 35.0 33.0 38.0 23.0 40.0 41 33.52042868078591 35.0 33.0 37.0 24.0 40.0 42 33.41523177681381 35.0 33.0 37.0 23.0 40.0 43 33.086311133792634 35.0 33.0 37.0 22.0 40.0 44 32.75557029854555 35.0 33.0 37.0 22.0 40.0 45 32.62654418644212 35.0 33.0 36.0 22.0 39.0 46 32.412948881517394 35.0 33.0 36.0 20.0 39.0 47 32.185822914008675 35.0 33.0 36.0 20.0 39.0 48 32.00600493323127 35.0 32.0 35.0 20.0 39.0 49 31.885222420685547 35.0 32.0 35.0 20.0 39.0 50 31.327767287573362 35.0 31.0 35.0 18.0 37.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 2.0 12 0.0 13 0.0 14 2.0 15 4.0 16 14.0 17 22.0 18 56.0 19 158.0 20 248.0 21 416.0 22 758.0 23 1137.0 24 1690.0 25 2629.0 26 3412.0 27 4604.0 28 5898.0 29 6686.0 30 7717.0 31 8887.0 32 10750.0 33 14504.0 34 27053.0 35 41566.0 36 45618.0 37 48370.0 38 48417.0 39 13307.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 0.0 0.0 100.0 0.0 2 0.0 0.0 100.0 0.0 3 0.0 0.0 0.0 100.0 4 0.0 0.0 0.0 100.0 5 100.0 0.0 0.0 0.0 6 0.0 0.0 0.0 100.0 7 98.45164582801735 1.3755209662328824 0.07110657480649825 0.10172663094326784 8 98.61155056562048 1.1690056987326698 0.14357404099685295 0.07586969464999575 9 96.90363187888067 2.3172578038615295 0.3000765501403419 0.479033767117462 10 50.80819937058774 40.821638173003315 2.4349749085651102 5.935187547843838 11 31.682912307561452 37.92191885685124 15.375350854809898 15.01981798077741 12 42.62720081653483 13.847069830739134 21.434379518584674 22.091349834141365 13 21.022029429276177 16.529726971166113 24.842731989453092 37.60551161010462 14 22.614952794080125 31.053500042527855 24.1905247937399 22.141022369652124 15 31.882963340988347 17.858977630347876 24.18882367951008 26.069235349153697 16 26.54418644211959 19.203198094752064 33.77732414731649 20.475291315811855 17 41.02883388619546 17.189419069490516 19.592072807689036 22.189674236624988 18 34.020583482180825 19.629497320745088 20.231691758101555 26.118227438972525 19 27.482180828442633 21.54427149783108 28.437866802755806 22.535680870970488 20 26.11244365059114 28.447733265288765 20.334439057582717 25.10538402653738 21 27.34847324997874 19.270562218252955 33.58067534234924 19.800289189419072 22 27.323636982223356 18.46491451900995 21.52045589861359 32.6909926001531 23 24.342944628731818 30.987156587564858 22.195117802160418 22.47478098154291 24 26.58263162371353 29.64123500893085 20.52530407416858 23.250829293187035 25 25.067619290635367 22.752062601003658 18.63026282214851 33.55005528621247 26 33.67729863060305 22.19001445947095 18.363868333758614 25.76881857616739 27 25.01148252105129 19.85948796461682 20.68418814323382 34.444841371098065 28 25.970230500978143 30.677894020583484 19.51212043888747 23.839755039550905 29 33.96886960959428 22.657480649825636 19.614527515522667 23.759122225057414 30 26.026027047716255 28.929148592327973 21.0985795696181 23.94624479033767 31 34.4009526239687 22.11686654758867 20.669218338011397 22.812962490431232 32 28.684868588925745 22.690822488730117 26.434634685719143 22.189674236624988 33 36.858722463213404 20.595389980437186 20.547078336310285 21.998809220039124 34 25.68580420175215 23.21068299736327 22.774857531683253 28.328655269201324 35 26.021263927872756 31.627115760823337 23.477417708599134 18.87420260270477 36 34.01173768818576 23.66283915964957 20.401462958237644 21.923960193927023 37 27.214085225822913 26.074338691843156 25.01148252105129 21.700093561282642 38 35.10181168665476 24.273539168155143 19.479799268520882 21.14484987666922 39 27.16985625584758 23.86595219869014 20.26945649400357 28.694735051458704 40 25.049587479799268 24.359275325338096 26.782682657140427 23.808454537722206 41 24.921323466870803 22.789146891213747 27.92617164242579 24.363357999489665 42 23.013013523858127 23.399846899719314 27.426384281704518 26.16075529471804 43 24.298715658756485 21.186016841030874 22.428510674491793 32.08675682572085 44 24.055796546738115 21.80011907799609 22.565960704261293 31.57812367100451 45 31.248447733265287 22.24615122905503 22.41115930934762 24.094241728332058 46 26.962660542655435 22.894615973462617 21.158458790507783 28.98426469337416 47 29.06319639363783 23.841456153780726 22.414901760653226 24.680445691928213 48 31.729522837458536 22.66292421536106 23.469932805987924 22.137620141192482 49 32.473590201582034 21.89980437186357 22.673130900739984 22.953474525814407 50 25.159479459045674 27.8179807774092 22.841541209492217 24.180998554052906 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 39.0 8 78.0 9 53.5 10 29.0 11 41.0 12 53.0 13 157.0 14 261.0 15 483.0 16 705.0 17 822.5 18 940.0 19 844.0 20 748.0 21 664.0 22 580.0 23 663.0 24 746.0 25 791.5 26 837.0 27 1047.5 28 1258.0 29 1555.5 30 1853.0 31 2570.5 32 3288.0 33 3384.5 34 3481.0 35 3187.5 36 2894.0 37 3499.0 38 4104.0 39 4732.5 40 5361.0 41 4912.0 42 4463.0 43 5466.5 44 6470.0 45 6172.0 46 5874.0 47 7366.5 48 8859.0 49 9336.5 50 9814.0 51 9592.0 52 9370.0 53 12359.0 54 15348.0 55 16964.0 56 18580.0 57 21516.0 58 24452.0 59 30092.5 60 35733.0 61 31137.5 62 26542.0 63 25694.0 64 24846.0 65 24218.0 66 23590.0 67 20097.5 68 16605.0 69 13892.5 70 11180.0 71 9198.5 72 7217.0 73 6613.5 74 6010.0 75 5104.5 76 4199.0 77 4902.5 78 5606.0 79 3443.0 80 1280.0 81 871.0 82 462.0 83 284.0 84 106.0 85 96.5 86 87.0 87 48.0 88 9.0 89 6.0 90 3.0 91 2.0 92 1.0 93 1.0 94 1.0 95 1.5 96 2.0 97 1.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 293925.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 15.117802160415073 #Duplication Level Percentage of deduplicated Percentage of total 1 73.79543152919994 11.156247342009015 2 9.427253291324407 2.8503870034872842 3 3.4297288173736917 1.555498851747895 4 1.658602453021267 1.0029769499021859 5 0.8371779003038146 0.632814493493238 6 0.6166310340947451 0.559326358764991 7 0.32181838640711147 0.3405630688100706 8 0.3623269944863283 0.43820702560176916 9 0.2700573871947789 0.367440673641235 >10 5.776977607741645 24.34566641149953 >50 2.5340384831776754 26.169260865867145 >100 0.9384494205018566 23.61963085821213 >500 0.020254304039608418 1.92293952538913 >1k 0.00900191290649263 2.25601769158799 >5k 0.0022504782266231575 2.783022879986391 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source TTCCGCGGGAAGCAGTGGTATCAACGCAGAGTGCAGTGCTTTCCGCGGGA 8180 2.783022879986391 No Hit TTCCGCGGGGAGTCCCGCCCGGGAGCCGGCAGGGAGCGGAGCTGTGGAGC 2245 0.7638002891894191 No Hit TTCCGCGGGGAATCCGCAGCGGCTTCTGAGCAGATCAGACTCTCCTCGTT 1787 0.6079782257378583 No Hit TTCCGCGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGC 1430 0.4865186697286723 No Hit TTCCGCGGGAAGCAGTGGTATCAACGCAGAGTGCAGTGCTTTCCGCGGGG 1169 0.3977205069320405 No Hit TTCCGCGGGAGTCCCGCCCGGGAGCCGGCAGGGAGCGGAGCTGTGGAGCC 833 0.2834056306881007 No Hit TTCCGCGGGAAGCAGTGGTATCAACGCAGAGTGCAGTGCTTTCCGCGGGC 739 0.2514246831674747 No Hit TTCCGCGGGAAGCAGTGGTATCAACGCAGATCGGAAGAGCTCGTATGCCG 713 0.24257888917240794 Illumina Single End Adapter 2 (100% over 23bp) TTCCGCGGGATCGGAAGAGCTCGTATGCCGTCTTCTGCTTGAAAAAAAAA 612 0.20821638173003318 Illumina Single End Adapter 2 (97% over 34bp) TTCCGCGGGGGCAGGTTCTCTTACATCGACCGCCTAAGAGTCGCGCTGTA 573 0.194947690737433 No Hit TTCCGCGGGGAGGCATTCAGGCAGCGAGAGCAGAGCAGCGTAGAGCAGCA 566 0.19256613081568427 No Hit TTCCGCGGGGGTCTCTTGCTGCAGCAACGAGAGTGGGAGCACCTGGAGCG 557 0.1895041252020073 No Hit TTCCGCGGGGGGGCTGGTGAGATGGCTCAGTGGGTTAGAGCACCCGACTG 531 0.18065833120694055 No Hit TTCCGCGGGAAGCAGTGGTATCAACGCAGAGTGCAGATCGGAAGAGCTCG 528 0.1796376626690482 No Hit TTCCGCGGGAAGCAGATCGGAAGAGCTCGTATGCCGTCTTCTGCTTGAAA 498 0.16943097729012505 Illumina Single End Adapter 2 (100% over 34bp) TTCCGCGGGAAGCAGTGGTATCAACAGATCGGAAGAGCTCGTATGCCGTC 483 0.16432763460066344 Illumina Single End Adapter 2 (100% over 25bp) TTCCGCGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTG 472 0.16058518329505825 No Hit TTCCGCGGGGCTTTCGCCGCCGGACGCCGCCGAGGTCGCACGCGTGAGGT 442 0.15037849791613508 No Hit TTCCGCGGGGCAGGTTCTCTTACATCGACCGCCTAAGAGTCGCGCTGTAA 420 0.14289359530492474 No Hit TTCCGCGGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 410 0.13949136684528368 No Hit TTCCGCGGGGGGGCGGACCGCGCTGCTGGAGGTGTGAGGAGCTTAGACTC 398 0.1354086926937144 No Hit TTCCGCGGGAAGCAGTGGTATCAACGCAGAGTGCAGTGCTTTCCGCGGGT 396 0.13472824700178618 No Hit TTCCGCGGGATGCCACAACTAGATACATCAACATGATTTATCACAATTAT 395 0.13438802415582207 No Hit TTCCGCGGGGATCGTGGTGTGCCCAGCTCTTCCAAGGACTGCTGCGCTTC 389 0.1323466870800374 No Hit TTCCGCGGGGAGGTTCTCTTACATCGACCGCCTAAGAGTCGCGCTGTAAG 383 0.13030535000425278 No Hit TTCCGCGGGGACTGTCCCCATAGTAGAGGCCACAGGAAGACCGTCGTGGA 376 0.12792379008250404 No Hit TTCCGCGGGCTCCTGGCCACTCAGGGAGCTTGGCTTCTTAAGTCTGACTC 373 0.12690312154461172 No Hit TTCCGCGGGGCCGGTAGTGGTGGCGCACGCCGGTAGGATTTGCTGAAGGA 367 0.12486178446882708 No Hit TTCCGCGGGAAGCACAGATCGGAAGAGCTCGTATGCCGTCTTCTGCTTGA 366 0.12452156162286299 Illumina Single End Adapter 2 (100% over 34bp) TTCCGCGGGGGGGCTGGTGAGATGGCTCAGTGGGTTAGAGCACCCGATTG 363 0.12350089308497064 No Hit TTCCGCGGGGGACGCTGTTGAGCTGGGAGGCGCGGTTGGAAGTCGTTACT 347 0.11805732754954494 No Hit TTCCGCGGGGCTCTCGAACCAGGCTGCTTCAGCCGTGAACAACGCCGAAA 342 0.11635621331972441 No Hit TTCCGCGGGAAGCAGTGGTATCAACGCAGAGATCGGAAGAGCTCGTATGC 341 0.11601599047376032 Illumina Single End Adapter 2 (100% over 21bp) TTCCGCGGGGCTCTTTGTCTCGGGCCTGAGTTCGTAGGCGCAGCCGGCCT 326 0.11091264778429871 No Hit TTCCGCGGGGGCTTTGCAGACGCCACTGTCGCTTTTCGCCGCTTGCTGCA 325 0.1105724249383346 No Hit TTCCGCGGGATGATATCTGTCGTAGAAACCTCGACATTGAGCGCCCAACC 324 0.1102322020923705 No Hit TTCCGCGGGGAGTCCATAGCTTGCAGCAGCCAGGTTCCATCCTTGCAAAC 323 0.10989197924640641 No Hit TTCCGCGGGAAGCAGTGGTATCAACGCAGGATCGGAAGAGCTCGTATGCC 320 0.10887131070851407 Illumina Single End Adapter 2 (95% over 22bp) TTCCGCGGGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 319 0.10853108786254997 No Hit TTCCGCGGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTCTGTG 317 0.10785064217062176 No Hit TTCCGCGGGGGGCTGGTGAGATGGCTCAGTGGGTTAGAGCACCCGACTGC 315 0.10717019647869354 No Hit TTCCGCGGGGGTTTTTTCGGCTCCTCGGGTTTGTGTCTGCAGGTGCCATC 315 0.10717019647869354 No Hit TTCCGCGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGGCTG 310 0.10546908224887301 No Hit TTCCGCGGGGGAGTCAAGATGGAGGGTGTGGACTGCTCCATGGCTCTGGC 309 0.10512885940290889 No Hit TTCCGCGGGAAGATCGGAAGAGCTCGTATGCCGTCTTCTGCTTGAAAAAA 308 0.1047886365569448 Illumina Single End Adapter 2 (100% over 34bp) TTCCGCGGGAAGCAGGATCGGAAGAGCTCGTATGCCGTCTTCTGCTTGAA 307 0.10444841371098068 Illumina Single End Adapter 2 (97% over 34bp) TTCCGCGGGGCAAGCTCCGTTGGGCGCCTTGGATCCATTTCCATCTGGTT 306 0.10410819086501659 No Hit TTCCGCGGGGGACTCACCACTGGTTCCTAACCTTCTGAGAGGCTCTAAGC 304 0.10342774517308836 No Hit TTCCGCGGGAGGCACCAGGCTTAAGAGACTTCTACGCTAAGGGACTAGGG 304 0.10342774517308836 No Hit TTCCGCGGGGGGTGACGGGGAATCAGGGTTCGATTCCGGAGAGGGAGCCT 301 0.10240707663519606 No Hit TTCCGCGGGGATAGTAGAGGCCACAGGAAGACCGTCGTGGAGAAGCCCCG 301 0.10240707663519606 No Hit TTCCGCGGGAATCCGCAGCGGCTTCTGAGCAGATCAGACTCTCCTCGTTC 296 0.10070596240537551 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.007484902611210343 0.0 0.0 0.0 0.0 8 0.01939270221995407 0.0 0.0 0.0 0.0 9 0.030279833290805476 0.0 0.0 0.0 0.0 10 0.08709704856681126 0.0 0.0 0.0 0.0 11 0.24257888917240794 0.0 0.0 0.0 0.0 12 0.2609509228544697 0.0 0.0 0.0 0.0 13 0.33341838904482435 0.0 0.0 0.0 0.0 14 0.5862039635961555 0.0 0.0 0.0 0.0 15 0.6624138810921153 0.0 0.0 0.0 0.0 16 0.9635110997703495 0.0 0.0 0.0 0.0 17 1.0870119928553201 0.0 0.0 0.0 0.0 18 1.1394063111337926 0.0 0.0 0.0 0.0 19 1.217317342859573 0.0 0.0 0.0 0.0 20 1.284001020668538 0.0 0.0 0.0 0.0 21 1.3265288764140513 0.0 0.0 0.0 0.0 22 1.3530662583992514 0.0 0.0 0.0 0.0 23 1.4006974568342265 0.0 0.0 0.0 0.0 24 1.485412945479289 0.0 0.0 0.0 0.0 25 1.5201156757676277 0.0 0.0 0.0 0.0 26 1.7375180743386918 0.0 0.0 0.0 0.0 27 1.811346431912903 0.0 0.0 0.0 0.0 28 2.147146380879476 0.0 0.0 0.0 0.0 29 2.1906949051628817 0.0 0.0 0.0 0.0 30 2.34549630007655 0.0 0.0 0.0 0.0 31 2.374075019137535 0.0 0.0 0.0 0.0 32 2.4754614272348388 0.0 0.0 0.0 0.0 33 2.533299311048737 0.0 0.0 0.0 0.0 34 2.5829718465594964 0.0 0.0 0.0 0.0 35 2.856170791868674 0.0 0.0 0.0 0.0 36 2.896657310538403 0.0 0.0 0.0 0.0 37 2.981032576337501 0.0 0.0 0.0 0.0 38 3.046695585608574 0.0 0.0 0.0 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ACAACTA 50 2.7284841E-11 44.0 15 GTTTGCG 20 7.846909E-4 44.0 41 TTCTACG 45 4.765752E-10 44.0 30 TTCTAAC 25 4.434732E-5 44.0 43 TGATAGC 20 7.846909E-4 44.0 36 GATACAT 50 2.7284841E-11 44.0 22 TCGTTAC 20 7.846909E-4 44.0 43 GCCTTAA 25 4.434732E-5 44.0 10 ACAGTAT 25 4.434732E-5 44.0 14 CAAACAT 20 7.846909E-4 44.0 39 ACCGGAT 25 4.434732E-5 44.0 23 CGAACCA 50 2.7284841E-11 44.0 15 GTATTGG 35 1.4411671E-7 44.0 23 CTCGTCA 20 7.846909E-4 44.0 12 GTATTCT 20 7.846909E-4 44.0 37 AATCAGC 25 4.434732E-5 44.0 30 CGAAATG 20 7.846909E-4 44.0 26 AGATAGC 25 4.434732E-5 44.0 21 CCCTATA 40 8.276402E-9 44.0 22 AACCCTC 25 4.434732E-5 44.0 25 >>END_MODULE