##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1527860_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4551186 Sequences flagged as poor quality 0 Sequence length 52 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.67761084693089 31.0 31.0 33.0 30.0 34.0 2 31.478203703386328 31.0 31.0 34.0 30.0 34.0 3 32.39706419381673 34.0 31.0 34.0 30.0 34.0 4 36.25666606462579 37.0 35.0 37.0 35.0 37.0 5 35.886359072118786 37.0 35.0 37.0 35.0 37.0 6 34.91429552648474 35.0 35.0 37.0 33.0 37.0 7 36.20629809460655 37.0 35.0 37.0 35.0 37.0 8 36.539534969566176 37.0 37.0 37.0 35.0 37.0 9 38.559545138344156 39.0 39.0 39.0 37.0 39.0 10 37.73117754361171 39.0 38.0 39.0 35.0 39.0 11 37.331553577463104 39.0 37.0 39.0 34.0 39.0 12 37.208419959105164 39.0 37.0 39.0 34.0 39.0 13 36.8210607081319 39.0 37.0 39.0 33.0 39.0 14 37.86509604309734 40.0 37.0 40.0 33.0 40.0 15 37.953122328992926 40.0 38.0 40.0 34.0 40.0 16 37.930225440138024 40.0 38.0 40.0 34.0 40.0 17 37.97522074465864 40.0 38.0 40.0 34.0 40.0 18 37.84563342390313 40.0 38.0 40.0 33.0 40.0 19 37.94684418522996 40.0 38.0 40.0 34.0 40.0 20 37.999752591961744 40.0 38.0 40.0 34.0 40.0 21 37.996553645577215 40.0 38.0 40.0 34.0 40.0 22 37.994403656541394 40.0 38.0 40.0 34.0 40.0 23 37.815344395944265 40.0 38.0 40.0 33.0 40.0 24 37.662427991297214 39.0 37.0 40.0 33.0 40.0 25 37.29818623101759 39.0 37.0 40.0 33.0 40.0 26 36.70811937811375 38.0 35.0 40.0 32.0 40.0 27 36.41234218948643 38.0 35.0 40.0 31.0 40.0 28 36.37931783056109 38.0 35.0 40.0 31.0 40.0 29 36.27060418976504 38.0 35.0 40.0 31.0 40.0 30 36.012939704068344 38.0 35.0 40.0 30.0 40.0 31 35.66571680436704 38.0 35.0 40.0 29.0 40.0 32 35.43346855083488 38.0 35.0 40.0 27.0 40.0 33 35.25012930695428 38.0 35.0 40.0 26.0 40.0 34 34.99105288160053 38.0 35.0 40.0 24.0 40.0 35 34.72975857282036 38.0 34.0 40.0 23.0 40.0 36 34.40174407286364 38.0 34.0 40.0 20.0 40.0 37 33.917435147673594 38.0 33.0 40.0 15.0 40.0 38 33.556644575721585 38.0 33.0 40.0 15.0 40.0 39 33.09797028730533 38.0 33.0 40.0 10.0 40.0 40 32.619077752480344 37.0 32.0 40.0 10.0 40.0 41 32.26236216230231 37.0 32.0 40.0 10.0 40.0 42 31.860208525865566 35.0 31.0 40.0 9.0 40.0 43 31.569713916328624 35.0 31.0 39.0 9.0 40.0 44 31.341866493700763 35.0 30.0 39.0 9.0 40.0 45 31.077772914576553 35.0 30.0 39.0 9.0 40.0 46 30.867156165447863 35.0 29.0 39.0 9.0 40.0 47 30.61543957992488 35.0 28.0 38.0 9.0 40.0 48 30.36937273053661 35.0 27.0 38.0 8.0 40.0 49 30.348487405260958 35.0 27.0 38.0 8.0 40.0 50 30.114167603785035 35.0 26.0 38.0 8.0 40.0 51 29.905200314819037 35.0 25.0 38.0 8.0 40.0 52 29.22829499827078 35.0 23.0 37.0 8.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 11.0 12 15.0 13 22.0 14 18.0 15 60.0 16 226.0 17 716.0 18 1926.0 19 4227.0 20 8317.0 21 15209.0 22 25548.0 23 41354.0 24 59971.0 25 81595.0 26 109794.0 27 141250.0 28 159008.0 29 146175.0 30 119918.0 31 116973.0 32 140280.0 33 178053.0 34 277474.0 35 344919.0 36 510573.0 37 892402.0 38 934350.0 39 240802.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 0.0 0.0 100.0 0.0 2 0.0 100.0 0.0 0.0 3 0.0 0.0 100.0 0.0 4 0.0 0.0 100.0 0.0 5 100.0 0.0 0.0 0.0 6 0.0 0.0 100.0 0.0 7 99.49674656232463 0.28364035220709505 0.16472629332222416 0.054886792146047206 8 98.21686039638898 1.2570569517484014 0.3042723369249246 0.22181031493768874 9 94.83066611648042 2.7921952651462716 1.1111169703896961 1.2660216479836246 10 46.317992716623756 34.3155827953417 9.195383357217219 10.17104113081733 11 26.346890678605533 43.8817486255231 16.844158863206207 12.927201832665155 12 36.809877689024354 29.791794929936945 18.600096765985832 14.798230615052868 13 21.500154025785807 30.75385185312136 26.462047475097698 21.283946645995133 14 29.063303499351594 33.43825104049801 18.893031398848564 18.605414061301822 15 24.52505786403808 31.891379521733455 19.464113310244848 24.11944930398362 16 25.093283377124116 38.4975037275998 21.122142667867234 15.287070227408856 17 32.64597403841548 31.101761167308915 19.36249144728429 16.889773346991312 18 25.26310724281539 32.62145295753678 24.962745974346028 17.152693825301803 19 29.613182146368 30.144933650261713 21.6484010980874 18.59348310528289 20 20.344850770766126 31.353827332040485 24.400562842300886 23.900759054892504 21 22.25916497370136 31.905573624105894 30.763893191796598 15.071368210396146 22 20.418963320769574 31.336952609715357 30.32835836636868 17.915725703146386 23 21.879022303197452 37.72249694914688 25.804416694901068 14.594064052754602 24 24.21551217638655 30.12405997030225 31.129753870749294 14.53067398256191 25 24.999351817306522 29.30117556171073 28.102652803027606 17.596819817955144 26 32.29208826007111 28.3033257704695 24.101849495933585 15.302736473525801 27 28.007336988644276 28.118253132260467 26.419465167980388 17.454944711114862 28 35.4949676853462 31.723181605849554 17.010972524524377 15.770878184279876 29 34.60948420917097 31.351520241097596 18.749815982031937 15.289179567699495 30 31.962503839658496 34.33370993846439 17.481443298516037 16.222342923361076 31 28.06771685446387 38.816365668201655 16.96430337059395 16.151614106740528 32 26.213343071454343 40.816943100106215 18.037671938699056 14.932041889740388 33 26.057295834536315 41.287655569339506 17.59853365694129 15.056514939182886 34 23.359427630512133 42.80323854045957 18.164891524978323 15.672442304049977 35 22.804759023252398 44.62500543814294 17.990717144937605 14.579518393667056 36 23.786173538062386 43.2300503648939 17.36055173310869 15.623224363935027 37 24.54235005996239 42.81174181850621 17.34750019006035 15.29840793147105 38 25.264777137212146 41.56920855355066 17.06109132872179 16.10492298051541 39 24.8432826080938 39.77686255846278 17.276222066072446 18.103632767370968 40 23.991812244105162 39.199123041774165 19.007001691427245 17.802063022693424 41 23.450239124483158 38.72555417423063 19.925970944716386 17.898235756569825 42 23.652516069437723 38.76883959477816 18.976460201802343 18.60218413398178 43 23.36751343495959 37.86364697026225 20.640246300634605 18.12859329414355 44 23.640035806051436 38.13884996130679 20.112537698964623 18.108576533677155 45 24.536659235636602 38.22493741191856 19.209476387034062 18.028926965410776 46 23.63915691426367 39.07126625894877 19.24157790958225 18.04799891720532 47 24.18417968415266 38.48976947986745 18.959695340950688 18.366355495029207 48 24.620307761537322 37.99356914878891 19.09192461042023 18.29419847925354 49 24.32946049667054 37.530722761056126 19.41581820650705 18.72399853576628 50 22.118366509301094 38.38764225412892 19.727209566912887 19.766781669657096 51 21.8811096711934 38.309970192385016 20.13897036948171 19.66994976693987 52 22.498223539973978 37.10276837729769 20.710689477424125 19.6883186053042 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 150.5 2 301.0 3 364.5 4 428.0 5 1309.5 6 2191.0 7 20550.0 8 38909.0 9 29199.5 10 19490.0 11 17224.0 12 14958.0 13 15650.0 14 19198.0 15 22054.0 16 25014.0 17 27974.0 18 33405.5 19 38837.0 20 48800.5 21 58764.0 22 77217.0 23 95670.0 24 115891.5 25 136113.0 26 184136.0 27 232159.0 28 268034.0 29 303909.0 30 259264.5 31 214620.0 32 188576.5 33 162533.0 34 161654.0 35 160775.0 36 157004.5 37 153234.0 38 143636.5 39 136141.5 40 138244.0 41 150778.5 42 163313.0 43 158584.0 44 153855.0 45 162306.0 46 170757.0 47 201765.0 48 232773.0 49 259126.0 50 285479.0 51 278561.0 52 271643.0 53 241587.5 54 211532.0 55 214432.5 56 217333.0 57 204765.5 58 192198.0 59 187697.5 60 183197.0 61 163211.0 62 143225.0 63 132502.5 64 96274.5 65 70769.0 66 61280.5 67 51792.0 68 45874.5 69 39957.0 70 40229.5 71 40502.0 72 29242.5 73 17983.0 74 12353.0 75 6723.0 76 4849.0 77 2975.0 78 2068.5 79 1162.0 80 738.0 81 314.0 82 325.0 83 336.0 84 176.5 85 17.0 86 15.0 87 13.0 88 9.5 89 7.0 90 8.0 91 4.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 52 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 52 4551186.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 23.719091251322904 #Duplication Level Percentage of deduplicated Percentage of total 1 78.47112066924839 18.612636717474736 2 9.277819006748937 4.401228712686721 3 3.6668810608589113 2.6092525947078076 4 1.8225764063566037 1.7291942437952184 5 1.0493735702276172 1.2445093734477677 6 0.6946814823913645 0.9886328082867024 7 0.4831862590916595 0.8022517279546295 8 0.3675159209353432 0.6973714931983503 9 0.28941945488197074 0.6178289814228238 >10 2.51800911340658 13.138134038150293 >50 0.8163647176114718 13.799873263153398 >100 0.49687251198391025 21.383833134315616 >500 0.02852556672237683 4.602668704064787 >1k 0.014773827716139401 6.198079506955828 >5k 0.0019512602643957698 3.2922014882749826 >10k+ 9.291715544741761E-4 5.882303212110441 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source TATTGTGGGGAGTGCAGTGCTTATTGTGGGAAAAAAAAAAAAAAAAAAAAAA 91260 2.00519161379034 No Hit TATTGTGGGAGTGCAGTGCTTATTGTGGGAAAAAAAAAAAAAAAAAAAAAAA 35515 0.7803460460635975 No Hit TATTGTGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 26417 0.5804421089360005 No Hit TATTGTGGGGTGCAGTGCTTATTGTGGGAAAAAAAAAAAAAAAAAAAAAAAA 23430 0.514810864684502 No Hit TATTGTGGGCAGAGTGCAGTGCTTATTGTGGGAAAAAAAAAAAAAAAAAAAA 18415 0.40461980679321835 No Hit TATTGTGGGAAGCAGTGGTATCAACGCAGAGTGCAGTGCTTATTGTGGGAAG 16669 0.36625618025719014 No Hit TATTGTGGGGAGTGCAGTGCTTATTGTGGGTAAAAAAAAAAAAAAAAAAAAA 16374 0.3597743533224087 No Hit TATTGTGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTC 14906 0.32751902471136096 No Hit TATTGTGGGAGATCGGAAGAGCTCGTATGCCGTCTTCTGCTTGAAAAAAAAA 12266 0.269512166718741 Illumina Single End Adapter 2 (100% over 34bp) TATTGTGGGGAGTGCAGTGCTTATTGTGGGGAAAAAAAAAAAAAAAAAAAAA 11651 0.25599920548182387 No Hit TATTGTGGGAGAGTGCAGTGCTTATTGTGGGAAAAAAAAAAAAAAAAAAAAA 9541 0.20963766367711623 No Hit TATTGTGGGGAGTGCAGTGCTTATTGTGGGCAAAAAAAAAAAAAAAAAAAAA 9502 0.20878074418404347 No Hit TATTGTGGGATCGGAAGAGCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAAA 9275 0.2037930332884659 Illumina Single End Adapter 2 (97% over 34bp) TATTGTGGGGATCGGAAGAGCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAA 9084 0.19959632500187863 Illumina Single End Adapter 2 (97% over 34bp) TATTGTGGGCAGTGCTTATTGTGGGAAAAAAAAAAAAAAAAAAAAAAAAAAA 8541 0.18766536898294203 No Hit TATTGTGGGGAGTGCAGTGCTTATTGGGGGAAAAAAAAAAAAAAAAAAAAAA 8045 0.17676711081463162 No Hit TATTGTGGGTGCAGTGCTTATTGTGGGAAAAAAAAAAAAAAAAAAAAAAAAA 7972 0.1751631333019569 No Hit TATTGTGGGAGTCCCGCCCGGGAGCCGGCAGGGAGCGGAGCTGTGGAGCCTC 7895 0.1734712666105055 No Hit TATTGTGGGACGCAGAGTGCAGTGCTTATTGTGGGAAAAAAAAAAAAAAAAA 7663 0.16837369424145707 No Hit TATTGTGGGGAGATCGGAAGAGCTCGTATGCCGTCTTCTGCTTGAAAAAAAA 7244 0.15916730276459806 Illumina Single End Adapter 2 (100% over 34bp) TATTGTGGGGAATCCGCAGCGGCTTCTGAGCAGATCAGACTCTCCTCGTTCG 7203 0.1582664386821369 No Hit TATTGTGGGGAGTCCCGCCCGGGAGCCGGCAGGGAGCGGAGCTGTGGAGCCT 7105 0.15611315380210786 No Hit TATTGTGGGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 6007 0.13198757422790455 No Hit TATTGTGGGAGTGCAGTGCTTATTGTGGGTAAAAAAAAAAAAAAAAAAAAAA 5839 0.12829622871928328 No Hit TATTGTGGGGAGTGCAGTGCTTATTGGGGAAAAAAAAAAAAAAAAAAAAAAA 5710 0.1254618027037348 No Hit TATTGTGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGTTC 5703 0.12530799664087558 No Hit TATTGTGGGGATGCCGACTGGCGATGCGGCGGCGTTATTCCCATGACCCGCC 5702 0.1252860243461814 No Hit TATTGTGGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 5635 0.12381388060167173 No Hit TATTGTGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCT 5363 0.11783741644485635 No Hit TATTGTGGGAAGAACGAAAGTCGGAGGTTCGAAGACGATCAGATACCGTCGT 5275 0.11590385451176902 No Hit TATTGTGGGGCAGAGTGCAGTGCTTATTGTGGGAAAAAAAAAAAAAAAAAAA 5076 0.11153136786762835 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.014194102372436547 0.0 0.0 0.0 0.0 8 0.15907941358582137 0.0 0.0 0.0 0.0 9 0.22482051931079064 0.0 0.0 0.0 0.0 10 0.637899659561266 0.0 0.0 0.0 0.0 11 1.0587130475440907 0.0 0.0 0.0 0.0 12 1.179824335898379 0.0 0.0 0.0 0.0 13 1.2919709280174443 0.0 0.0 0.0 0.0 14 1.3967128568245728 0.0 0.0 0.0 0.0 15 1.520350959068691 0.0 0.0 0.0 0.0 16 1.690702159832624 0.0 0.0 0.0 0.0 17 1.8090449390554462 0.0 0.0 0.0 0.0 18 1.9229273424553512 0.0 0.0 0.0 0.0 19 2.0397540333442756 0.0 0.0 0.0 0.0 20 2.167347148633345 0.0 0.0 0.0 0.0 21 2.298367941894706 0.0 0.0 0.0 0.0 22 2.4469006540273237 0.0 0.0 0.0 0.0 23 2.6011681350751212 0.0 0.0 0.0 0.0 24 2.7578305962445833 0.0 0.0 0.0 0.0 25 2.899947398326502 0.0 0.0 0.0 0.0 26 3.0466564099995033 0.0 0.0 0.0 0.0 27 3.1765785885261555 0.0 0.0 0.0 0.0 28 3.3195523101011473 0.0 0.0 0.0 0.0 29 3.446771896380416 0.0 0.0 0.0 0.0 30 3.5902290084386794 4.394458938834844E-5 0.0 0.0 0.0 31 3.7433319578676856 4.394458938834844E-5 0.0 0.0 0.0 32 3.8905023877292644 4.394458938834844E-5 0.0 0.0 0.0 33 4.0171067497570965 4.394458938834844E-5 0.0 0.0 0.0 34 4.14114035330571 4.394458938834844E-5 0.0 0.0 0.0 35 4.282488125073333 4.394458938834844E-5 0.0 0.0 0.0 36 4.3973592817344755 4.394458938834844E-5 0.0 0.0 0.0 37 4.523106724269234 4.394458938834844E-5 0.0 0.0 0.0 38 4.650106587601561 4.394458938834844E-5 0.0 0.0 0.0 39 4.789257129899767 4.394458938834844E-5 0.0 0.0 2.197229469417422E-5 40 4.942447968507549 4.394458938834844E-5 0.0 0.0 2.197229469417422E-5 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGCAATT 20 6.3134334E-4 46.0 27 CGATATA 20 6.3134334E-4 46.0 31 TGGGATT 7240 0.0 40.59945 6 GTGGGGG 51060 0.0 40.495495 5 GTGGGGC 35280 0.0 40.282593 5 TGGGGCT 15980 0.0 40.2428 6 GTGGGGT 50085 0.0 39.52501 5 TCGTTAA 105 0.0 39.42857 38 TCGATAG 70 0.0 39.42857 43 ACGATAT 35 5.3766216E-6 39.42857 38 CGAATAG 70 0.0 39.42857 24 CCGAATA 70 0.0 39.42857 23 TGTGGGG 233840 0.0 39.3756 4 GTGGGAT 22520 0.0 38.993786 5 TGGGGTC 6750 0.0 38.571854 6 TGGGGAG 65170 0.0 38.440384 6 TGGGGTT 5385 0.0 38.440113 6 ATATCGC 30 1.0020327E-4 38.333332 10 CCGCAAT 60 1.2369128E-10 38.333332 31 TGGGGTG 33050 0.0 38.31014 6 >>END_MODULE