##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1527859_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4566613 Sequences flagged as poor quality 0 Sequence length 52 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.62888841248426 31.0 31.0 33.0 30.0 34.0 2 31.438536832440146 31.0 31.0 34.0 30.0 34.0 3 32.375867409828686 34.0 31.0 34.0 30.0 34.0 4 36.25039936600715 37.0 35.0 37.0 35.0 37.0 5 35.906594449759595 37.0 35.0 37.0 35.0 37.0 6 34.81863538688302 35.0 35.0 37.0 32.0 37.0 7 36.15268142932191 37.0 35.0 37.0 35.0 37.0 8 36.51153623046227 37.0 37.0 37.0 35.0 37.0 9 38.514236919134596 39.0 39.0 39.0 37.0 39.0 10 37.65406046012657 39.0 38.0 39.0 35.0 39.0 11 37.30156157309586 39.0 37.0 39.0 34.0 39.0 12 37.16441857455405 39.0 37.0 39.0 34.0 39.0 13 36.635036075971406 39.0 37.0 39.0 32.0 39.0 14 37.80559924828314 40.0 37.0 40.0 33.0 40.0 15 37.90901528112849 40.0 38.0 40.0 33.0 40.0 16 37.911733707235534 40.0 38.0 40.0 33.0 40.0 17 37.99168333292092 40.0 38.0 40.0 34.0 40.0 18 37.87363260254372 40.0 38.0 40.0 33.0 40.0 19 37.92758374751703 40.0 38.0 40.0 34.0 40.0 20 37.98916702597746 40.0 38.0 40.0 34.0 40.0 21 38.044378404738914 40.0 38.0 40.0 34.0 40.0 22 37.935190479245776 40.0 38.0 40.0 34.0 40.0 23 37.77533830872027 40.0 37.0 40.0 33.0 40.0 24 37.67856571161165 39.0 37.0 40.0 33.0 40.0 25 37.284920574614056 39.0 37.0 40.0 33.0 40.0 26 36.64819024515543 38.0 35.0 40.0 32.0 40.0 27 36.35554600313186 38.0 35.0 40.0 31.0 40.0 28 36.34580442879657 38.0 35.0 40.0 31.0 40.0 29 36.24137451542314 38.0 35.0 40.0 31.0 40.0 30 35.972487486896746 38.0 35.0 40.0 30.0 40.0 31 35.65326249454464 38.0 35.0 40.0 29.0 40.0 32 35.41656518737191 38.0 35.0 40.0 27.0 40.0 33 35.06824467061255 38.0 35.0 40.0 25.0 40.0 34 34.92628278332322 38.0 35.0 40.0 24.0 40.0 35 34.7367968338898 38.0 34.0 40.0 23.0 40.0 36 34.28545642032728 38.0 34.0 40.0 20.0 40.0 37 33.873470775824444 38.0 33.0 40.0 15.0 40.0 38 33.27264692672666 38.0 33.0 40.0 12.0 40.0 39 32.97018183936322 38.0 33.0 40.0 10.0 40.0 40 32.56143710885945 37.0 32.0 40.0 10.0 40.0 41 32.03294783245263 37.0 31.0 40.0 9.0 40.0 42 31.76461745280364 35.0 31.0 39.0 9.0 40.0 43 31.572977828425575 35.0 31.0 39.0 9.0 40.0 44 31.344552516274096 35.0 30.0 39.0 9.0 40.0 45 31.072259462319227 35.0 30.0 39.0 9.0 40.0 46 30.713032175049648 35.0 28.0 38.0 9.0 40.0 47 30.390267360076276 35.0 27.0 38.0 8.0 40.0 48 30.277311215117198 35.0 27.0 38.0 8.0 40.0 49 30.077732446344807 35.0 27.0 38.0 8.0 40.0 50 29.70314322671967 35.0 25.0 38.0 8.0 40.0 51 29.617169880609545 35.0 24.0 38.0 8.0 40.0 52 29.111566274610965 35.0 23.0 37.0 8.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 3.0 11 4.0 12 18.0 13 18.0 14 32.0 15 67.0 16 238.0 17 731.0 18 1845.0 19 4294.0 20 8419.0 21 15106.0 22 25670.0 23 41657.0 24 62034.0 25 82672.0 26 112202.0 27 141738.0 28 160620.0 29 147679.0 30 121401.0 31 120091.0 32 144455.0 33 186102.0 34 287324.0 35 357190.0 36 539111.0 37 904012.0 38 897586.0 39 204294.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 0.0 0.0 100.0 0.0 2 0.0 100.0 0.0 0.0 3 0.0 0.0 100.0 0.0 4 0.0 0.0 100.0 0.0 5 100.0 0.0 0.0 0.0 6 0.0 0.0 100.0 0.0 7 99.488242161094 0.2858354758767603 0.16710415355976083 0.05881820946946895 8 98.21705933916449 1.2525256683673436 0.30952918497801324 0.2208858074901464 9 94.79213587838514 2.813704599010251 1.1271154354441684 1.2670440871604403 10 46.30223756644148 34.26307418649227 9.29196321212242 10.142725034943842 11 26.366893800722767 43.78617150172349 16.813949419405585 13.03298527814816 12 36.782709636222734 29.801233430553452 18.614058165209094 14.801998768014718 13 21.796394833545126 30.617002141412026 26.371623783315997 21.214979241726855 14 29.030793719546633 33.35036273054012 18.909463096610114 18.709380453303137 15 24.607318377975098 31.84285596348979 19.470995243082783 24.078830415452327 16 25.064418640248253 38.42843700571956 21.147598887840946 15.359545466191246 17 32.66942042165605 31.08121927564258 19.298766941713694 16.95059336098767 18 25.327020266442545 32.55931693795818 24.950504892794726 17.163157902804553 19 29.624187554320898 30.13163147391732 21.67083131414902 18.573349657612763 20 20.426780197927876 31.310097877792582 24.37949088306804 23.883631041211505 21 22.298517522724172 31.833439794438462 30.81217961758529 15.055863065252082 22 20.651848536322216 31.227016609465263 30.223340580863763 17.89779427334876 23 21.915169951997246 37.638529912650796 25.76327356839741 14.683026566954545 24 24.23207309224583 30.104105602992853 31.096219451922025 14.567601852839292 25 25.09006127736246 29.221920053221062 28.10476823851726 17.583250430899223 26 32.38308129022538 28.18143337304913 24.123064511926014 15.312420824799474 27 28.08530085645532 28.03532946628059 26.384806419987854 17.494563257276237 28 35.48117609265335 31.658802705637633 17.02489350422293 15.83512769748608 29 34.65176488570413 31.256075345119015 18.818345237487826 15.273814531689023 30 31.961718674212158 34.26747569807207 17.553315772543023 16.21748985517275 31 28.09741048781668 38.77217097222822 16.99071062075985 16.139707919195253 32 26.207344480471633 40.694492833090955 18.131140081281245 14.967022605156163 33 26.030670871387613 41.06719794298313 17.769537291642624 15.132593893986638 34 23.456136966281136 42.71737062019488 18.15656373771984 15.669928675804146 35 22.771012126492874 44.57548734696809 18.093760079954222 14.55974044658481 36 24.044822716529733 42.970577975405405 17.387613095307177 15.596986212757683 37 24.62939163007682 42.731144504690896 17.322882407596175 15.316581457636108 38 25.35980167358171 41.27139742299161 17.001112202851434 16.36768870057524 39 24.832321022166756 39.72423325558789 17.284232318350604 18.159213403894746 40 24.011778532579836 39.20921260461528 18.994449496815253 17.78455936598963 41 23.761286537746905 38.50628463589973 19.921307104411955 17.811121721941404 42 23.629087903879746 38.78301051567102 19.001194101624115 18.586707478825115 43 23.35704821056656 37.85413828585869 20.653556585591993 18.13525691798276 44 23.710877186220948 38.09002426962827 20.081929429973595 18.11716911417718 45 24.507879253179546 38.194675134503406 19.26559136935843 18.031854242958623 46 23.839221760197326 38.896989957327236 19.257927045711998 18.00586123676344 47 24.452258161574015 38.34620976202713 18.943054732249042 18.258477344149814 48 24.60834758715048 37.96724180481245 19.112983736524203 18.31142687151287 49 24.455367687167712 37.49413405515203 19.34184044060664 18.708657817073618 50 22.2350131267966 38.348290078445444 19.681129099400366 19.735567695357588 51 21.823373252780563 38.29737707136559 20.20118630591206 19.678063369941793 52 22.535323225331332 36.97882872930113 20.7578789794537 19.72796906591384 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 148.0 2 296.0 3 382.0 4 468.0 5 1276.5 6 2085.0 7 19928.5 8 37772.0 9 28823.5 10 19875.0 11 17580.5 12 15286.0 13 15797.0 14 18885.0 15 21462.0 16 24478.0 17 27494.0 18 33067.5 19 38641.0 20 48384.0 21 58127.0 22 76075.5 23 94024.0 24 114657.5 25 135291.0 26 182069.0 27 228847.0 28 265145.5 29 301444.0 30 259829.5 31 218215.0 32 191600.0 33 164985.0 34 163179.0 35 161373.0 36 157902.0 37 154431.0 38 145263.0 39 137610.5 40 139126.0 41 151166.0 42 163206.0 43 159679.0 44 156152.0 45 163908.5 46 171665.0 47 202945.0 48 234225.0 49 260358.5 50 286492.0 51 279648.5 52 272805.0 53 243670.5 54 214536.0 55 216388.5 56 218241.0 57 205830.5 58 193420.0 59 188697.5 60 183975.0 61 163924.5 62 143874.0 63 133289.5 64 97311.0 65 71917.0 66 61562.5 67 51208.0 68 45797.5 69 40387.0 70 40347.5 71 40308.0 72 29176.5 73 18045.0 74 12413.5 75 6782.0 76 4972.5 77 3163.0 78 2160.5 79 1158.0 80 746.5 81 335.0 82 328.5 83 322.0 84 171.5 85 21.0 86 14.5 87 8.0 88 8.5 89 9.0 90 9.0 91 4.5 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 52 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 52 4566613.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 24.580684863166322 #Duplication Level Percentage of deduplicated Percentage of total 1 78.52821645964781 19.30277341661113 2 9.252200700117978 4.548508594007336 3 3.7441331529405355 2.761000713544938 4 1.785690307686981 1.7557396286585676 5 1.0504801839061553 1.2910761177799102 6 0.6719648944525478 0.9910414385789337 7 0.48253494519345763 0.8302727596285929 8 0.37755963347253957 0.7424539493952862 9 0.28514823607784373 0.6308225037285506 >10 2.5336530183658925 13.773817800657234 >50 0.7819215600019247 13.592563884452694 >100 0.4624967334008973 20.484839791089296 >500 0.027799273577877023 4.601493682626152 >1k 0.013439383915118605 5.876822842498423 >5k 0.001841011495221727 3.094942666867369 >10k+ 9.205057476108635E-4 5.721830209875645 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source TATTGTGGGGAGTGCAGTGCTTATTGTGGGAAAAAAAAAAAAAAAAAAAAAA 86889 1.9027011923278807 No Hit TATTGTGGGAGTGCAGTGCTTATTGTGGGAAAAAAAAAAAAAAAAAAAAAAA 33177 0.7265121874789915 No Hit TATTGTGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 25548 0.5594518300543532 No Hit TATTGTGGGGTGCAGTGCTTATTGTGGGAAAAAAAAAAAAAAAAAAAAAAAA 22325 0.4888743583045027 No Hit TATTGTGGGCAGAGTGCAGTGCTTATTGTGGGAAAAAAAAAAAAAAAAAAAA 17492 0.3830409977810688 No Hit TATTGTGGGGAGTGCAGTGCTTATTGTGGGTAAAAAAAAAAAAAAAAAAAAA 15644 0.34257336892791224 No Hit TATTGTGGGAAGCAGTGGTATCAACGCAGAGTGCAGTGCTTATTGTGGGAAG 15145 0.3316462332148575 No Hit TATTGTGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTC 14029 0.3072079898165227 No Hit TATTGTGGGAGATCGGAAGAGCTCGTATGCCGTCTTCTGCTTGAAAAAAAAA 11594 0.2538861953049229 Illumina Single End Adapter 2 (100% over 34bp) TATTGTGGGGAGTGCAGTGCTTATTGTGGGGAAAAAAAAAAAAAAAAAAAAA 11037 0.24168897167331674 No Hit TATTGTGGGAGAGTGCAGTGCTTATTGTGGGAAAAAAAAAAAAAAAAAAAAA 9067 0.19854977857768985 No Hit TATTGTGGGATCGGAAGAGCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAAA 8821 0.1931628539576268 Illumina Single End Adapter 2 (97% over 34bp) TATTGTGGGGAGTGCAGTGCTTATTGTGGGCAAAAAAAAAAAAAAAAAAAAA 8730 0.1911701298095547 No Hit TATTGTGGGGATCGGAAGAGCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAA 8536 0.1869219047026757 Illumina Single End Adapter 2 (97% over 34bp) TATTGTGGGCAGTGCTTATTGTGGGAAAAAAAAAAAAAAAAAAAAAAAAAAA 7887 0.17271005885543617 No Hit TATTGTGGGGAGTGCAGTGCTTATTGGGGGAAAAAAAAAAAAAAAAAAAAAA 7650 0.16752021684342422 No Hit TATTGTGGGTGCAGTGCTTATTGTGGGAAAAAAAAAAAAAAAAAAAAAAAAA 7516 0.16458587579021913 No Hit TATTGTGGGAGTCCCGCCCGGGAGCCGGCAGGGAGCGGAGCTGTGGAGCCTC 7397 0.16198000575043253 No Hit TATTGTGGGACGCAGAGTGCAGTGCTTATTGTGGGAAAAAAAAAAAAAAAAA 7133 0.15619891591426732 No Hit TATTGTGGGGAATCCGCAGCGGCTTCTGAGCAGATCAGACTCTCCTCGTTCG 7024 0.15381202655009302 No Hit TATTGTGGGGAGTCCCGCCCGGGAGCCGGCAGGGAGCGGAGCTGTGGAGCCT 7013 0.1535711478069195 No Hit TATTGTGGGGAGATCGGAAGAGCTCGTATGCCGTCTTCTGCTTGAAAAAAAA 6806 0.14903824782174446 Illumina Single End Adapter 2 (100% over 34bp) TATTGTGGGAGTGCAGTGCTTATTGTGGGTAAAAAAAAAAAAAAAAAAAAAA 5612 0.12289195515363356 No Hit TATTGTGGGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 5609 0.12282626095094985 No Hit TATTGTGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGTTC 5567 0.12190654211337812 No Hit TATTGTGGGGATGCCGACTGGCGATGCGGCGGCGTTATTCCCATGACCCGCC 5547 0.12146858076215349 No Hit TATTGTGGGAAGAACGAAAGTCGGAGGTTCGAAGACGATCAGATACCGTCGT 5263 0.11524952957476362 No Hit TATTGTGGGGAGTGCAGTGCTTATTGGGGAAAAAAAAAAAAAAAAAAAAAAA 5218 0.11426411653450819 No Hit TATTGTGGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 5214 0.11417652426426324 No Hit TATTGTGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCT 5173 0.11327870349425274 No Hit TATTGTGGGGCAGAGTGCAGTGCTTATTGTGGGAAAAAAAAAAAAAAAAAAA 4966 0.10874580350907774 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.01377388449601488 0.0 0.0 0.0 0.0 8 0.15661497919793071 0.0 0.0 0.0 0.0 9 0.21766679155864532 0.0 0.0 0.0 0.0 10 0.6218175264687417 0.0 0.0 0.0 0.0 11 1.0355158188355351 0.0 0.0 0.0 0.0 12 1.1555391271386475 0.0 0.0 0.0 0.0 13 1.269080607443635 0.0 0.0 0.0 0.0 14 1.3722643017921599 0.0 0.0 0.0 0.0 15 1.5000395260119481 0.0 0.0 0.0 0.0 16 1.6669465969636577 0.0 0.0 0.0 0.0 17 1.7837946854703912 0.0 0.0 0.0 0.0 18 1.898584355626369 0.0 0.0 0.0 0.0 19 2.0123886127420914 0.0 0.0 0.0 0.0 20 2.1412806384075025 0.0 0.0 0.0 2.1898067561231924E-5 21 2.2686835954787496 0.0 0.0 0.0 2.1898067561231924E-5 22 2.4161451824360856 0.0 0.0 0.0 2.1898067561231924E-5 23 2.571862340864006 0.0 0.0 0.0 2.1898067561231924E-5 24 2.725236406062874 0.0 0.0 0.0 2.1898067561231924E-5 25 2.866873107048922 0.0 0.0 0.0 2.1898067561231924E-5 26 3.00886017711595 0.0 0.0 0.0 2.1898067561231924E-5 27 3.1372485472274527 0.0 0.0 0.0 2.1898067561231924E-5 28 3.2746808192417443 0.0 0.0 0.0 2.1898067561231924E-5 29 3.397463284057572 0.0 0.0 0.0 2.1898067561231924E-5 30 3.5376328145170173 2.1898067561231924E-5 0.0 0.0 6.569420268369577E-5 31 3.6840651922989753 2.1898067561231924E-5 0.0 0.0 8.75922702449277E-5 32 3.829468360905555 2.1898067561231924E-5 0.0 0.0 8.75922702449277E-5 33 3.9527106851401683 2.1898067561231924E-5 0.0 0.0 8.75922702449277E-5 34 4.072142745619128 2.1898067561231924E-5 0.0 0.0 8.75922702449277E-5 35 4.213582363997125 2.1898067561231924E-5 0.0 0.0 8.75922702449277E-5 36 4.3254376930998975 2.1898067561231924E-5 0.0 0.0 8.75922702449277E-5 37 4.446139841497407 2.1898067561231924E-5 0.0 0.0 1.0949033780615962E-4 38 4.5686595295025 2.1898067561231924E-5 0.0 0.0 1.0949033780615962E-4 39 4.702018760950402 2.1898067561231924E-5 0.0 0.0 1.0949033780615962E-4 40 4.8511664991099535 2.1898067561231924E-5 0.0 0.0 1.0949033780615962E-4 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTACGA 20 6.313435E-4 46.0 41 CCGATAG 85 0.0 45.999996 21 GTGGGGG 51080 0.0 40.556187 5 TGGGGCT 16615 0.0 40.393616 6 GTGGGGC 35740 0.0 40.317574 5 TGGGATT 7300 0.0 40.265755 6 CGAATAG 80 0.0 40.25 24 CCGAATA 80 0.0 40.25 23 GTGGGGT 50195 0.0 39.40632 5 TGTGGGG 234345 0.0 39.352577 4 GTGGGAT 22555 0.0 39.05564 5 TGGGGAG 64295 0.0 38.3697 6 CGATAGG 30 1.00203324E-4 38.333332 44 TGGGGCC 6600 0.0 38.298485 6 TGGGGTG 32755 0.0 38.21279 6 GTGGGAG 55460 0.0 38.06239 5 TGGGGAC 7670 0.0 37.933506 6 TGGGGTC 6640 0.0 37.894577 6 CGAAAGT 730 0.0 37.808216 15 TGGGGGC 12600 0.0 37.803967 6 >>END_MODULE