##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1527846_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1792157 Sequences flagged as poor quality 0 Sequence length 50 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.072147696881466 33.0 31.0 34.0 30.0 34.0 2 31.872796300770524 33.0 31.0 34.0 30.0 34.0 3 32.6263541642836 34.0 31.0 34.0 31.0 34.0 4 36.159639473550584 37.0 35.0 37.0 35.0 37.0 5 36.29716537111425 37.0 37.0 37.0 35.0 37.0 6 36.385423821685265 37.0 37.0 37.0 35.0 37.0 7 36.531774838923155 37.0 37.0 37.0 35.0 37.0 8 36.49626957906032 37.0 37.0 37.0 35.0 37.0 9 34.75814172530643 35.0 35.0 35.0 33.0 39.0 10 33.78308987438042 35.0 33.0 35.0 27.0 39.0 11 33.44197857665372 35.0 33.0 35.0 25.0 39.0 12 33.862485820159726 35.0 33.0 35.0 27.0 39.0 13 33.91769917479328 35.0 33.0 35.0 30.0 39.0 14 34.404939968987094 35.0 34.0 35.0 30.0 40.0 15 34.47492323496211 35.0 34.0 35.0 31.0 40.0 16 34.56610107261808 35.0 34.0 35.0 31.0 40.0 17 34.59657384927771 35.0 34.0 35.0 31.0 40.0 18 34.51324744428083 35.0 34.0 35.0 31.0 40.0 19 34.52128357058003 35.0 34.0 35.0 31.0 40.0 20 34.51145519058877 35.0 34.0 35.0 31.0 40.0 21 34.47629811450671 35.0 34.0 36.0 31.0 40.0 22 34.27977738557504 35.0 34.0 35.0 31.0 39.0 23 33.96388597650764 35.0 34.0 35.0 31.0 38.0 24 33.770785148845775 35.0 34.0 35.0 30.0 37.0 25 33.66161167799473 35.0 34.0 35.0 30.0 37.0 26 33.488691001960206 35.0 34.0 35.0 29.0 37.0 27 33.336825958886415 35.0 34.0 35.0 29.0 37.0 28 33.104749751277375 35.0 33.0 35.0 27.0 36.0 29 32.79240044259515 35.0 33.0 35.0 24.0 36.0 30 32.619456889100675 35.0 33.0 35.0 23.0 36.0 31 32.443841136686125 35.0 33.0 35.0 23.0 36.0 32 32.30316205555652 35.0 33.0 35.0 22.0 36.0 33 32.03594327952295 35.0 33.0 35.0 21.0 36.0 34 31.554441379856787 35.0 33.0 35.0 18.0 36.0 35 31.22097003778129 35.0 33.0 35.0 15.0 36.0 36 30.792916022424375 35.0 32.0 35.0 12.0 36.0 37 30.335097315692767 35.0 31.0 35.0 10.0 36.0 38 29.946100704346772 35.0 31.0 35.0 9.0 36.0 39 29.643901734055667 35.0 30.0 35.0 9.0 36.0 40 29.37003566093819 35.0 29.0 35.0 8.0 35.0 41 29.147182975598678 35.0 27.0 35.0 8.0 35.0 42 29.011562603053193 35.0 26.0 35.0 8.0 35.0 43 28.92863404266479 35.0 25.0 35.0 8.0 35.0 44 28.670226994621565 35.0 23.0 35.0 8.0 35.0 45 28.63628856177221 35.0 23.0 35.0 8.0 35.0 46 28.473018825917595 35.0 23.0 35.0 8.0 35.0 47 28.334553836522137 35.0 23.0 35.0 8.0 35.0 48 28.11803262772179 35.0 23.0 35.0 8.0 35.0 49 27.919657150573304 34.0 22.0 35.0 8.0 35.0 50 27.285731105031534 34.0 18.0 35.0 8.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 6.0 11 20.0 12 22.0 13 39.0 14 120.0 15 366.0 16 1001.0 17 2240.0 18 3923.0 19 5889.0 20 8696.0 21 12919.0 22 19236.0 23 27265.0 24 37762.0 25 50923.0 26 65620.0 27 79955.0 28 78346.0 29 64953.0 30 61076.0 31 71545.0 32 94836.0 33 169091.0 34 526982.0 35 234735.0 36 50182.0 37 40966.0 38 60510.0 39 22932.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 0.0 0.0 100.0 0.0 2 0.0 100.0 0.0 0.0 3 0.0 100.0 0.0 0.0 4 100.0 0.0 0.0 0.0 5 100.0 0.0 0.0 0.0 6 100.0 0.0 0.0 0.0 7 97.97088089938549 1.515157433193632 0.3045492108113296 0.20941245660954927 8 94.10777069196504 4.3338836943415115 0.9371388778996483 0.6212067357937948 9 79.32809458099932 14.919675006151806 3.59505333517097 2.1571770776779045 10 34.19254005089955 45.652975715855256 8.483296943292357 11.671187289952833 11 22.910102184127844 48.38995690667726 15.123898185259439 13.576042723935458 12 30.758465915653595 36.99508469403071 17.468447239834457 14.778002150481237 13 21.947909697643677 37.53571813183778 22.76111970100834 17.755252469510204 14 25.908556002627 39.972111818328415 17.859372811645407 16.259959367399173 15 22.592607678903132 39.745066977948916 18.208058780564425 19.454266562583523 16 26.0458765610379 41.281985897440904 17.773275444059866 14.898862097461327 17 27.559192637698594 38.65040841845887 16.75706983260953 17.033329111233 18 24.087510190234447 40.68901329515215 18.730278653042117 16.49319786157128 19 26.336810893242053 38.56888654286427 18.44710033774943 16.647202226144252 20 23.511332991473402 35.939373615146444 21.145245645331297 19.404047748048857 21 23.552233425977747 35.9765913365849 24.014413915745106 16.45676132169224 22 21.250035571660295 38.62741936113856 21.497446931267742 18.625098135933406 23 21.80127075920246 42.69893764887786 20.655500606252687 14.84429098566699 24 23.682858142450687 43.15358531646502 19.135265492922773 14.028291048161517 25 28.42931729753587 40.62166428499289 16.05830292770109 14.890715489770148 26 29.78020340851834 39.18155608018717 15.46560931882642 15.57263119246807 27 31.741303914779788 36.41885169658685 14.62980084892116 17.210043539712203 28 32.60841544574499 36.936775070487684 14.521551404257552 15.933258079509773 29 32.17943517225332 37.31263499793824 14.52093761874657 15.986992211061866 30 28.420612703016534 39.819502420825856 15.766085225792159 15.993799650365453 31 26.42798594096388 42.33088953702159 15.42359291066575 15.817531611348782 32 24.145987209825925 43.835780012577025 16.476569854092023 15.54166292350503 33 22.932923845399706 44.70361692641884 17.02233677071819 15.34112245746327 34 21.503194195597818 45.60303589473467 17.44852711006904 15.445242799598471 35 21.918615389165126 45.37180615314395 17.319074165935238 15.390504291755688 36 23.620754208476153 43.81541349334908 16.746468082874436 15.817364215300334 37 24.568550634793716 41.9768468945522 16.542189105083985 16.912413365570092 38 25.037984953327193 40.5778623189821 17.465434110962377 16.918718616728334 39 24.917627194492447 39.20086242444161 18.192825740155577 17.688684640910367 40 25.461162163805962 38.721551739049644 18.40011784681811 17.41716825032628 41 24.67758126101675 39.39013155655447 17.99847892790643 17.933808254522344 42 23.9404248623307 39.63648274118841 18.019012843182825 18.404079553298065 43 23.859963161709604 39.28723878544123 18.437391366939394 18.415406685909772 44 24.506502499501998 39.09942041908159 18.141100361184872 18.252976720231544 45 24.432904036867306 39.49905058541188 17.698951598548565 18.36909377917225 46 23.78764806877969 40.141349223310236 18.119227277520885 17.95177543038919 47 23.136477440313545 39.68686895177152 18.153264474038828 19.023389133876105 48 22.900728005414706 38.90730555414509 19.405610111167714 18.78635632927249 49 22.77479037829833 38.653812138110666 19.35198757698126 19.219409906609744 50 21.43751914592304 38.13739532864587 20.352792751974295 20.07229277345679 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 461.0 6 922.0 7 3233.0 8 5544.0 9 11198.0 10 16852.0 11 18059.5 12 19267.0 13 13450.0 14 7633.0 15 7910.0 16 8187.0 17 9255.0 18 10323.0 19 12311.5 20 14300.0 21 16642.0 22 18984.0 23 23380.0 24 27776.0 25 32758.5 26 37741.0 27 43336.0 28 48931.0 29 53079.0 30 57227.0 31 61171.5 32 65116.0 33 71948.0 34 78780.0 35 90575.0 36 102370.0 37 101570.5 38 100771.0 39 90471.5 40 80172.0 41 78014.0 42 75856.0 43 74221.0 44 72586.0 45 73232.5 46 73879.0 47 73592.5 48 73306.0 49 71588.5 50 69871.0 51 71739.0 52 73607.0 53 79157.0 54 84707.0 55 91823.5 56 98940.0 57 98643.5 58 98347.0 59 94308.0 60 90269.0 61 79761.5 62 69254.0 63 66312.0 64 63370.0 65 54808.5 66 46247.0 67 38413.5 68 30580.0 69 26462.0 70 22344.0 71 18023.5 72 13703.0 73 12792.0 74 11881.0 75 13369.5 76 14858.0 77 10165.5 78 5473.0 79 3448.5 80 1424.0 81 941.5 82 459.0 83 328.5 84 198.0 85 130.5 86 63.0 87 45.0 88 27.0 89 16.5 90 6.0 91 5.0 92 4.0 93 3.0 94 2.0 95 1.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1792157.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 27.28609702658777 #Duplication Level Percentage of deduplicated Percentage of total 1 78.79958491486971 21.501331196419766 2 9.451493759073298 5.157887515125255 3 3.4619231077060815 2.833871094463632 4 1.6369160896741266 1.7866020498892343 5 0.8997724478816033 1.2275639157373905 6 0.6146620249349513 1.0063036590560392 7 0.42595426392611735 0.8135840562063767 8 0.3412873495779508 0.7449919787624754 9 0.2630780088851185 0.6460534868400776 >10 2.9910460393410325 20.256031408078513 >50 0.7793176795695426 14.457678621449624 >100 0.30743300176659316 14.461480432864713 >500 0.017728496874859164 3.3581333948607037 >1k 0.007091398749943665 4.79672366305412 >5k 0.0014599938602825192 2.578000655071348 >10k+ 0.001251423308813588 4.37376287212076 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source TAAGGGGGGGAGTGCAGTGCTTAAGGGGGGAAAAAAAAAAAAAAAAAAAA 15624 0.8717986203217686 No Hit TAAGGGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 14005 0.7814605528421895 No Hit TAAGGGGGGGAGTGCAGTGCTTAAGGGGGAAAAAAAAAAAAAAAAAAAAA 13587 0.7581367034249789 No Hit TAAGGGGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 12409 0.6924058550673853 No Hit TAAGGGGGGCAGAGTGCAGTGCTTAAGGGGGGAAAAAAAAAAAAAAAAAA 10869 0.6064758835302934 No Hit TAAGGGGGGCAGAGTGCAGTGCTTAAGGGGGAAAAAAAAAAAAAAAAAAA 10359 0.5780185552939837 No Hit TAAGGGGGGAGTGCAGTGCTTAAGGGGGGAAAAAAAAAAAAAAAAAAAAA 7759 0.43294197997162076 No Hit TAAGGGGGGATCGGAAGAGCTCGTATGCCGTCTTCTGCTTGAAAAAAAAA 7334 0.40922753977469606 Illumina Single End Adapter 2 (97% over 34bp) TAAGGGGGGAGAGTGCAGTGCTTAAGGGGGGAAAAAAAAAAAAAAAAAAA 6543 0.365090781667008 No Hit TAAGGGGGGAGTGCAGTGCTTAAGGGGGAAAAAAAAAAAAAAAAAAAAAA 6409 0.35761375816962465 No Hit TAAGGGGGGAGAGTGCAGTGCTTAAGGGGGAAAAAAAAAAAAAAAAAAAA 6175 0.34455686639061195 No Hit TAAGGGGGATCGGAAGAGCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAA 5852 0.3265338918409492 Illumina Single End Adapter 2 (97% over 34bp) TAAGGGAGATCGGAAGAGCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAA 5227 0.2916597150807658 Illumina Single End Adapter 2 (100% over 34bp) TAAGGGGAGATCGGAAGAGCTCGTATGCCGTCTTCTGCTTGAAAAAAAAA 4795 0.267554684104127 Illumina Single End Adapter 2 (100% over 34bp) TAAGGGGGGGTGCAGTGCTTAAGGGGGGAAAAAAAAAAAAAAAAAAAAAA 4791 0.26733148937286183 No Hit TAAGGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 4699 0.2621980105537629 No Hit TAAGGGGGGCAGTGCTTAAGGGGGGAAAAAAAAAAAAAAAAAAAAAAAAA 4531 0.25282383184062557 No Hit TAAGGGGGGGCAGAGTGCAGTGCTTAAGGGGGAAAAAAAAAAAAAAAAAA 3860 0.21538291567089266 No Hit TAAGGGGGGGATCGGAAGAGCTCGTATGCCGTCTTCTGCTTGAAAAAAAA 3786 0.21125381314248695 Illumina Single End Adapter 2 (97% over 34bp) TAAGGGGGGCAGTGCTTAAGGGGGAAAAAAAAAAAAAAAAAAAAAAAAAA 3775 0.21064002763150771 No Hit TAAGGGGGGGCAGAGTGCAGTGCTTAAGGGGGGAAAAAAAAAAAAAAAAA 3775 0.21064002763150771 No Hit TAAGGGGGGGAGTCCCGCCCGGGAGCCGGCAGGGAGCGGAGCTGTGGAGC 3578 0.19964768711669795 No Hit TAAGGGGATCGGAAGAGCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAAA 3519 0.1963555648305366 Illumina Single End Adapter 2 (97% over 34bp) TAAGGGGGGGTGCAGTGCTTAAGGGGGAAAAAAAAAAAAAAAAAAAAAAA 3430 0.19138948205988648 No Hit TAAGGGGGGAGATCGGAAGAGCTCGTATGCCGTCTTCTGCTTGAAAAAAA 3074 0.17152515097728604 Illumina Single End Adapter 2 (100% over 34bp) TAAGGGGGGAGTCCCGCCCGGGAGCCGGCAGGGAGCGGAGCTGTGGAGCC 3055 0.17046497600377647 No Hit TAAGGGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGC 2694 0.15032165150709453 No Hit TAAGGGGGGAAGCAGTGGTATCAACGCAGAGTGCAGTGCTTAAGGGGGGA 2539 0.14167285567056903 No Hit TAAGGGGGGGAGTGCAGTGCTTAAGGGGAAAAAAAAAAAAAAAAAAAAAA 2475 0.13810173997032626 No Hit TAAGGGGGAGATCGGAAGAGCTCGTATGCCGTCTTCTGCTTGAAAAAAAA 2206 0.12309189429274334 Illumina Single End Adapter 2 (100% over 34bp) TAAGGGGGGGAGTGCAGTGCTTAAGGGGGGTAAAAAAAAAAAAAAAAAAA 1958 0.10925382095430256 No Hit TAAGGGGGGCAGAGTGCAGTGCTTAAGGGGAAAAAAAAAAAAAAAAAAAA 1873 0.1045109329149176 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.42574394988831893 0.0 0.0 0.0 0.0 8 0.780009787088966 5.579868281629344E-5 0.0 0.0 0.0 9 0.9514791393834358 5.579868281629344E-5 0.0 0.0 0.0 10 1.2574233172651725 5.579868281629344E-5 0.0 0.0 0.0 11 1.5858543643218759 5.579868281629344E-5 0.0 0.0 0.0 12 1.783437500174371 5.579868281629344E-5 0.0 0.0 0.0 13 1.9162941639599655 5.579868281629344E-5 0.0 0.0 0.0 14 2.0834112189947644 5.579868281629344E-5 0.0 0.0 0.0 15 2.259846654059884 5.579868281629344E-5 0.0 0.0 0.0 16 2.4378444522438603 5.579868281629344E-5 0.0 0.0 0.0 17 2.5907328431605046 5.579868281629344E-5 0.0 0.0 0.0 18 2.7624811888690557 5.579868281629344E-5 0.0 0.0 0.0 19 2.9388608252513593 5.579868281629344E-5 0.0 0.0 0.0 20 3.116468032655621 5.579868281629344E-5 0.0 0.0 0.0 21 3.2994319136102472 5.579868281629344E-5 0.0 0.0 0.0 22 3.5063892281758795 5.579868281629344E-5 0.0 0.0 0.0 23 3.736726190841539 5.579868281629344E-5 0.0 0.0 0.0 24 3.9613716878599363 5.579868281629344E-5 0.0 0.0 0.0 25 4.173239286513403 5.579868281629344E-5 0.0 0.0 0.0 26 4.378634237960179 5.579868281629344E-5 0.0 0.0 0.0 27 4.584196585455404 5.579868281629344E-5 0.0 0.0 0.0 28 4.776255651709086 5.579868281629344E-5 0.0 0.0 0.0 29 4.947669205320739 5.579868281629344E-5 0.0 0.0 0.0 30 5.112554313042886 5.579868281629344E-5 0.0 0.0 0.0 31 5.264159334254756 5.579868281629344E-5 0.0 0.0 0.0 32 5.413978797616504 5.579868281629344E-5 0.0 0.0 0.0 33 5.554200887533849 5.579868281629344E-5 0.0 0.0 0.0 34 5.691577244627563 5.579868281629344E-5 0.0 0.0 0.0 35 5.834031281857561 5.579868281629344E-5 0.0 0.0 0.0 36 5.957011578784671 5.579868281629344E-5 0.0 0.0 0.0 37 6.0885290741826745 5.579868281629344E-5 0.0 0.0 0.0 38 6.215526876272559 5.579868281629344E-5 0.0 0.0 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGGAATT 20 7.85766E-4 44.000004 13 TATACTA 20 7.85766E-4 44.000004 30 CGTTTCG 20 7.85766E-4 44.000004 44 TGCGATG 50 2.7284841E-11 44.0 15 TCGCGAC 25 4.4438406E-5 44.0 23 TAATCGC 25 4.4438406E-5 44.0 28 CCGATAA 40 4.12625E-7 38.500004 23 ACATTCG 35 7.2924868E-6 37.714287 28 TTCGTAC 35 7.2924868E-6 37.714287 18 CAATTAG 35 7.2924868E-6 37.714287 38 ATATACG 35 7.2924868E-6 37.714287 37 CATTTCG 35 7.2924868E-6 37.714287 36 AGGGGGG 162290 0.0 37.161007 3 ACCGACC 30 1.3013858E-4 36.666664 38 GTTACGC 30 1.3013858E-4 36.666664 23 CTTATAC 30 1.3013858E-4 36.666664 20 TCGTACT 30 1.3013858E-4 36.666664 27 TCGTACA 30 1.3013858E-4 36.666664 19 TTACGCG 30 1.3013858E-4 36.666664 24 GTCCGAC 85 0.0 36.235294 10 >>END_MODULE