##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1527845_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 2594879 Sequences flagged as poor quality 0 Sequence length 52 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.74116134124173 31.0 31.0 33.0 30.0 34.0 2 31.4954126955438 31.0 31.0 34.0 30.0 34.0 3 32.27736476344369 34.0 31.0 34.0 30.0 34.0 4 35.998656199383475 37.0 35.0 37.0 35.0 37.0 5 36.058216972737455 37.0 35.0 37.0 35.0 37.0 6 36.17295103162807 37.0 37.0 37.0 35.0 37.0 7 36.468493135903444 37.0 37.0 37.0 35.0 37.0 8 36.4013007928308 37.0 37.0 37.0 35.0 37.0 9 34.565716166341474 35.0 35.0 35.0 33.0 38.0 10 33.32714935840939 35.0 33.0 35.0 26.0 39.0 11 32.824238047323206 35.0 33.0 35.0 22.0 39.0 12 33.27715396363376 35.0 33.0 35.0 25.0 39.0 13 33.39474981299706 35.0 33.0 35.0 27.0 39.0 14 33.94662101778156 35.0 33.0 35.0 29.0 40.0 15 34.01163060011661 35.0 34.0 35.0 29.0 40.0 16 34.1007280108244 35.0 34.0 35.0 29.0 40.0 17 34.13461359855315 35.0 34.0 35.0 30.0 40.0 18 34.10591592132042 35.0 34.0 35.0 29.0 40.0 19 34.13055213749851 35.0 34.0 35.0 29.0 40.0 20 34.17293137753244 35.0 34.0 35.0 30.0 40.0 21 34.12711999287828 35.0 34.0 35.0 30.0 39.0 22 33.97279834628127 35.0 34.0 35.0 30.0 39.0 23 33.70122576043045 35.0 34.0 35.0 29.0 37.0 24 33.491554712185035 35.0 33.0 35.0 29.0 37.0 25 33.38188370247707 35.0 33.0 35.0 29.0 37.0 26 33.15570860914902 35.0 33.0 35.0 27.0 37.0 27 32.99476237620328 35.0 33.0 35.0 25.0 36.0 28 32.79544518260774 35.0 33.0 35.0 24.0 36.0 29 32.55753081357551 35.0 33.0 35.0 23.0 36.0 30 32.150541123497476 35.0 33.0 35.0 22.0 36.0 31 31.82411125913771 35.0 33.0 35.0 21.0 36.0 32 31.5965580668694 35.0 32.0 35.0 20.0 36.0 33 31.324022815707398 35.0 32.0 35.0 18.0 36.0 34 30.971147402248814 35.0 31.0 35.0 17.0 36.0 35 30.585065816171003 35.0 31.0 35.0 15.0 36.0 36 30.207495609621873 35.0 30.0 35.0 11.0 35.0 37 29.747589772008638 35.0 29.0 35.0 10.0 35.0 38 29.385469996866906 34.0 27.0 35.0 9.0 35.0 39 29.084625525891575 34.0 25.0 35.0 9.0 35.0 40 28.79834358365072 34.0 24.0 35.0 8.0 35.0 41 28.567595252032948 34.0 23.0 35.0 8.0 35.0 42 28.410110452163664 34.0 23.0 35.0 8.0 35.0 43 28.32229402604129 34.0 23.0 35.0 8.0 35.0 44 28.213998417652615 34.0 23.0 35.0 8.0 35.0 45 28.142025119475704 34.0 23.0 35.0 8.0 35.0 46 27.973694341817094 34.0 23.0 35.0 8.0 35.0 47 27.769722595928364 34.0 23.0 35.0 8.0 35.0 48 27.513244355517156 33.0 20.0 35.0 8.0 35.0 49 27.460382160401313 34.0 20.0 35.0 8.0 35.0 50 27.299273299448643 34.0 20.0 35.0 8.0 35.0 51 27.1688795508384 34.0 18.0 35.0 8.0 35.0 52 26.646218956644994 33.0 17.0 35.0 8.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 17.0 13 48.0 14 177.0 15 809.0 16 2283.0 17 4866.0 18 8271.0 19 12676.0 20 18842.0 21 28135.0 22 40044.0 23 55305.0 24 73291.0 25 95509.0 26 114925.0 27 117720.0 28 100665.0 29 90822.0 30 100705.0 31 127492.0 32 170364.0 33 285444.0 34 701571.0 35 232600.0 36 67586.0 37 50927.0 38 71980.0 39 21804.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 0.0 0.0 100.0 0.0 2 0.0 100.0 0.0 0.0 3 0.0 100.0 0.0 0.0 4 100.0 0.0 0.0 0.0 5 100.0 0.0 0.0 0.0 6 100.0 0.0 0.0 0.0 7 98.01054307349206 1.4863506159632107 0.2978944297595379 0.20521188078519267 8 94.26385584838445 4.1900604999308255 0.9358817887076815 0.6102018629770406 9 79.74105921701937 14.467996388270898 3.6268743166829744 2.1640700780267594 10 34.54504044311893 45.282381182321025 8.38443719341056 11.788141181149488 11 23.150366548883397 47.65490028629466 15.3572478716734 13.837485293148543 12 30.848991417326204 36.311558265337226 17.78572334201325 15.05372697532332 13 21.909884815438406 36.88653690595978 22.9647316888379 18.238846589763916 14 25.91959008493267 39.19905321211509 18.237228017183075 16.644128685769164 15 22.774819172685895 38.894453267377784 18.618209172759116 19.712518387177205 16 26.25710100548041 40.480307559620314 18.067008134097968 15.19558330080131 17 27.615276088017975 37.94296381449771 16.982525967492126 17.459234129992186 18 24.20613832090051 39.98695122200303 18.989401817965305 16.81750863913115 19 26.46308363511362 37.99560596081744 18.673548940046917 16.86776146402202 20 23.71794600056496 35.38673672259863 21.332015866635786 19.56330141020063 21 23.93845724598334 35.27875480899109 24.115690943585424 16.667097001440144 22 21.48947985628617 37.921190159541155 21.57884818521403 19.010481798958644 23 21.953971649545124 41.95078074931432 20.87607938558985 15.219168215550704 24 23.796909220044558 42.415966216536496 19.356008507525786 14.431116055893165 25 28.41531339226222 39.90752555321462 16.398799327444554 15.278361727078604 26 29.687935352669626 38.662573476451115 15.714374350403236 15.935116820476022 27 31.579314488267084 35.87724128947824 14.902929963208303 17.640514259046373 28 32.52413696361179 36.470332528029246 14.817685140617346 16.18784536774162 29 32.01625201020934 36.868270158261716 14.845817473570058 16.269660357958887 30 28.439322218878026 39.23824579103689 16.024831986385493 16.297600003699593 31 26.649489244007142 41.60775897450325 15.64254055776782 16.1002112237218 32 24.506653296743316 43.169642977572366 16.589405517559776 15.734298208124542 33 23.320316669871698 44.00139659691261 17.133361517049543 15.544925216166149 34 21.463120245683903 45.23112638392773 17.54829415938084 15.757459211007527 35 22.012587099437006 44.971615246799566 17.514458284952784 15.501339368810646 36 23.628423521867497 43.50642168671449 16.86460139374514 16.000553397672878 37 24.54600002543471 41.723255689378966 16.66374424395126 17.067000041235065 38 24.946827963847255 40.32403823068436 17.614424410540916 17.11470939492747 39 24.94031513608149 38.83645441656432 18.2382685281279 17.98496191922629 40 25.344071920116505 38.33943702191894 18.562985017798518 17.753506040166034 41 24.65375071438784 38.978079517387904 18.20354629252462 18.16462347569964 42 24.13133714520022 39.040163337095876 18.168014770630926 18.660484747072985 43 24.01711216592373 38.69625520110957 18.646534192923834 18.64009844004287 44 24.6837713820182 38.467188643478174 18.278925529860928 18.570114444642698 45 24.882932884346438 38.75602677427349 17.871700376009827 18.489339965370256 46 23.97052039806095 39.640807914357474 18.225859471674788 18.162812215906794 47 23.401515061010553 39.04077993617429 18.265707187117393 19.291997815697766 48 23.313148705585114 38.206020396326764 19.522798558237206 18.958032339850913 49 22.9529392314632 38.07256523329219 19.52106437332916 19.45343116191545 50 21.364387318252604 37.86920314974224 20.23951791201054 20.52689161999461 51 20.992809298622404 37.21738084897215 20.885906433402095 20.903903419003353 52 21.61642219155498 35.577188762944246 21.750532491110373 21.0558565543904 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 577.0 6 1154.0 7 4284.0 8 7414.0 9 14877.0 10 22340.0 11 24057.0 12 25774.0 13 17966.0 14 10303.5 15 10449.0 16 11394.5 17 12340.0 18 14324.5 19 16309.0 20 17783.0 21 19257.0 22 23288.0 23 27319.0 24 33120.0 25 38921.0 26 46138.0 27 53355.0 28 61625.0 29 69895.0 30 78939.0 31 87983.0 32 100243.5 33 112504.0 34 130337.5 35 148171.0 36 147270.5 37 146370.0 38 128645.5 39 108087.0 40 105253.0 41 102948.5 42 100644.0 43 102134.5 44 103625.0 45 104165.5 46 104706.0 47 101247.5 48 97789.0 49 95868.5 50 93948.0 51 98330.0 52 102712.0 53 111922.0 54 121132.0 55 129395.0 56 137658.0 57 137830.0 58 138002.0 59 134632.0 60 131262.0 61 118017.5 62 104773.0 63 97660.5 64 80429.0 65 70310.0 66 61634.0 67 52958.0 68 43850.5 69 34743.0 70 29563.5 71 24384.0 72 22613.0 73 20842.0 74 21949.5 75 23057.0 76 17139.5 77 11222.0 78 7024.5 79 2827.0 80 2108.0 81 1389.0 82 862.5 83 336.0 84 203.5 85 71.0 86 53.5 87 36.0 88 23.0 89 7.0 90 4.0 91 2.5 92 1.0 93 2.0 94 3.0 95 1.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 52 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 52 2594879.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 28.143322434068185 #Duplication Level Percentage of deduplicated Percentage of total 1 80.82722019114085 22.747465192887038 2 8.467336409040898 4.765979574347262 3 3.385104276497228 2.8580424337921375 4 1.6851183019053053 1.8969931084028189 5 0.942281010495683 1.32594591509398 6 0.5660874766975543 0.9558949429552401 7 0.40899232452671674 0.805728200355011 8 0.2877193453150561 0.6477902644576504 9 0.22956163172485633 0.5814564318111104 >10 1.9509814916610988 12.721206200297983 >50 0.8118144110110637 16.20061576011649 >100 0.4095083174682755 19.9040416145812 >500 0.01861999848588629 3.5814056813413138 >1k 0.007310073479644247 4.146813155051728 >5k 0.001517185061812957 2.8754809033035835 >10k+ 8.275554882616129E-4 3.9851406212055194 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source TAAGGGGGGGAGTGCAGTGCTTAAGGGGGGAAAAAAAAAAAAAAAAAAAAAA 20283 0.7816549442189791 No Hit TAAGGGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 18633 0.7180681642573701 No Hit TAAGGGGGGGAGTGCAGTGCTTAAGGGGGAAAAAAAAAAAAAAAAAAAAAAA 17688 0.6816502811884484 No Hit TAAGGGGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 16540 0.637409297312129 No Hit TAAGGGGGGCAGAGTGCAGTGCTTAAGGGGGGAAAAAAAAAAAAAAAAAAAA 15195 0.5855764372828174 No Hit TAAGGGGGGCAGAGTGCAGTGCTTAAGGGGGAAAAAAAAAAAAAAAAAAAAA 14326 0.55208739983637 No Hit TAAGGGGGGAGTGCAGTGCTTAAGGGGGGAAAAAAAAAAAAAAAAAAAAAAA 9877 0.3806343185944316 No Hit TAAGGGGGGAGAGTGCAGTGCTTAAGGGGGGAAAAAAAAAAAAAAAAAAAAA 8530 0.32872438368031803 No Hit TAAGGGGGGAGTGCAGTGCTTAAGGGGGAAAAAAAAAAAAAAAAAAAAAAAA 8273 0.31882026098326743 No Hit TAAGGGGGGAGAGTGCAGTGCTTAAGGGGGAAAAAAAAAAAAAAAAAAAAAA 7860 0.3029042972716647 No Hit TAAGGGGGGATCGGAAGAGCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAAA 6650 0.25627399196648476 Illumina Single End Adapter 2 (97% over 34bp) TAAGGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 6182 0.23823846892282838 No Hit TAAGGGGGGGTGCAGTGCTTAAGGGGGGAAAAAAAAAAAAAAAAAAAAAAAA 5958 0.22960608182500997 No Hit TAAGGGGGGGCAGAGTGCAGTGCTTAAGGGGGAAAAAAAAAAAAAAAAAAAA 5415 0.20868025060128045 No Hit TAAGGGGGGGCAGAGTGCAGTGCTTAAGGGGGGAAAAAAAAAAAAAAAAAAA 5172 0.19931565209784347 No Hit TAAGGGGGGCAGTGCTTAAGGGGGGAAAAAAAAAAAAAAAAAAAAAAAAAAA 5115 0.1971190178809879 No Hit TAAGGGGGGGAGTCCCGCCCGGGAGCCGGCAGGGAGCGGAGCTGTGGAGCCT 5046 0.1944599343553206 No Hit TAAGGGGGGAGTCCCGCCCGGGAGCCGGCAGGGAGCGGAGCTGTGGAGCCTC 4701 0.1811645167269842 No Hit TAAGGGGGATCGGAAGAGCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAAAA 4666 0.17981570624295004 Illumina Single End Adapter 2 (97% over 34bp) TAAGGGAGATCGGAAGAGCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAAAA 4347 0.16752226211703897 Illumina Single End Adapter 2 (100% over 34bp) TAAGGGGAGATCGGAAGAGCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAAA 4227 0.16289776902892197 Illumina Single End Adapter 2 (100% over 34bp) TAAGGGGGGGTGCAGTGCTTAAGGGGGAAAAAAAAAAAAAAAAAAAAAAAAA 4154 0.16008453573365078 No Hit TAAGGGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTC 4133 0.1592752494432303 No Hit TAAGGGGGGCAGTGCTTAAGGGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAA 4044 0.15584541706954352 No Hit TAAGGGGGGGATCGGAAGAGCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAA 3953 0.1523385098110548 Illumina Single End Adapter 2 (97% over 34bp) TAAGGGGGGAGATCGGAAGAGCTCGTATGCCGTCTTCTGCTTGAAAAAAAAA 3706 0.14281976153801393 Illumina Single End Adapter 2 (100% over 34bp) TAAGGGGGGAAGCAGTGGTATCAACGCAGAGTGCAGTGCTTAAGGGGGGAAG 3229 0.12443740151274878 No Hit TAAGGGGGGGAGTGCAGTGCTTAAGGGGAAAAAAAAAAAAAAAAAAAAAAAA 3204 0.12347396545272439 No Hit TAAGGGGATCGGAAGAGCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAAAAA 2667 0.10277935888340073 Illumina Single End Adapter 2 (97% over 34bp) >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.40329433472620496 0.0 0.0 0.0 0.0 8 0.7184920761237807 1.1561232720292546E-4 0.0 0.0 0.0 9 0.8819293693463164 1.1561232720292546E-4 0.0 0.0 0.0 10 1.1751993060177373 1.1561232720292546E-4 0.0 0.0 0.0 11 1.4840383694191521 1.1561232720292546E-4 0.0 0.0 0.0 12 1.6606554679428212 1.1561232720292546E-4 0.0 0.0 0.0 13 1.7860177680731935 1.1561232720292546E-4 0.0 0.0 0.0 14 1.9409382865251135 1.1561232720292546E-4 0.0 0.0 0.0 15 2.10125404691317 1.1561232720292546E-4 0.0 0.0 3.8537442400975154E-5 16 2.2670421241221654 1.1561232720292546E-4 0.0 0.0 3.8537442400975154E-5 17 2.4137541673426774 1.1561232720292546E-4 0.0 0.0 3.8537442400975154E-5 18 2.571064007223458 1.1561232720292546E-4 0.0 0.0 3.8537442400975154E-5 19 2.727757248025823 1.1561232720292546E-4 0.0 0.0 3.8537442400975154E-5 20 2.8866085856026427 1.1561232720292546E-4 0.0 0.0 3.8537442400975154E-5 21 3.036442161657634 1.1561232720292546E-4 0.0 0.0 3.8537442400975154E-5 22 3.211903136909274 1.1561232720292546E-4 0.0 0.0 3.8537442400975154E-5 23 3.3974609220699694 1.1561232720292546E-4 0.0 0.0 3.8537442400975154E-5 24 3.585947552853139 1.1561232720292546E-4 0.0 0.0 3.8537442400975154E-5 25 3.760483629487155 1.1561232720292546E-4 0.0 0.0 3.8537442400975154E-5 26 3.931320111650678 1.1561232720292546E-4 0.0 0.0 3.8537442400975154E-5 27 4.096029140472446 1.1561232720292546E-4 0.0 0.0 3.8537442400975154E-5 28 4.246594927933056 1.1561232720292546E-4 0.0 0.0 3.8537442400975154E-5 29 4.378739817925999 1.1561232720292546E-4 0.0 0.0 3.8537442400975154E-5 30 4.513620866329413 1.1561232720292546E-4 0.0 0.0 3.8537442400975154E-5 31 4.634589898026074 1.1561232720292546E-4 0.0 0.0 3.8537442400975154E-5 32 4.758718999999615 1.1561232720292546E-4 0.0 0.0 3.8537442400975154E-5 33 4.88500619874761 1.1561232720292546E-4 0.0 0.0 3.8537442400975154E-5 34 5.009019688393948 1.1561232720292546E-4 0.0 0.0 3.8537442400975154E-5 35 5.140201142326868 1.1561232720292546E-4 0.0 0.0 3.8537442400975154E-5 36 5.254734421142566 1.1561232720292546E-4 0.0 0.0 3.8537442400975154E-5 37 5.371194572078313 1.1561232720292546E-4 0.0 0.0 3.8537442400975154E-5 38 5.49042941886693 1.1561232720292546E-4 0.0 0.0 3.8537442400975154E-5 39 5.623576282362299 1.1561232720292546E-4 0.0 0.0 3.8537442400975154E-5 40 5.7628891366418245 1.1561232720292546E-4 0.0 0.0 3.8537442400975154E-5 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GATACGA 20 6.3129293E-4 46.0 9 CGTATTA 30 1.8623141E-6 46.0 44 TTACGTA 30 1.8623141E-6 46.0 41 TACGTAC 20 6.3129293E-4 46.0 35 ACGCGTA 20 6.3129293E-4 46.0 15 CCGATAA 45 1.5897967E-8 40.88889 23 TAATCGC 40 2.9124567E-7 40.25 28 CGTCGCA 35 5.3757267E-6 39.42857 39 TACGTAT 35 5.3757267E-6 39.42857 42 GTTATAG 65 7.2759576E-12 38.923077 37 AGGGGGG 238400 0.0 38.662 3 GATCGCG 30 1.0019134E-4 38.333332 44 TATTCGA 30 1.0019134E-4 38.333332 43 TAAGGGG 315245 0.0 37.085854 1 ACACGAA 50 4.0239684E-8 36.8 36 CACGCAT 25 0.0018920499 36.8 28 ATAGACG 25 0.0018920499 36.8 24 CGATTAG 25 0.0018920499 36.8 33 CGACACG 25 0.0018920499 36.8 45 TAACGCC 25 0.0018920499 36.8 10 >>END_MODULE