##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1527843_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1753852 Sequences flagged as poor quality 0 Sequence length 50 %GC 50 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 27.10649929412516 31.0 31.0 33.0 3.0 34.0 2 29.934633595081 33.0 31.0 34.0 16.0 34.0 3 29.957407466536516 31.0 30.0 31.0 25.0 33.0 4 35.18071251166005 35.0 35.0 37.0 33.0 37.0 5 36.10443982730584 37.0 35.0 37.0 35.0 37.0 6 36.14934954602783 37.0 35.0 37.0 35.0 37.0 7 36.440786337729755 37.0 36.0 37.0 35.0 37.0 8 36.673885253715824 37.0 37.0 37.0 35.0 37.0 9 38.76918805007492 39.0 39.0 39.0 39.0 39.0 10 38.32704070810992 39.0 39.0 39.0 37.0 39.0 11 38.149589018913794 39.0 38.0 39.0 37.0 39.0 12 37.73385895731225 39.0 37.0 39.0 35.0 39.0 13 37.63560950410867 39.0 37.0 39.0 35.0 39.0 14 38.392924830601444 40.0 38.0 40.0 35.0 40.0 15 38.39121088894616 40.0 38.0 40.0 35.0 40.0 16 38.43169321014544 40.0 38.0 40.0 35.0 40.0 17 38.31898130515003 40.0 38.0 40.0 35.0 40.0 18 38.23255554060434 40.0 38.0 40.0 34.0 40.0 19 38.21007986990921 40.0 38.0 40.0 34.0 40.0 20 38.13231276071185 40.0 38.0 40.0 34.0 40.0 21 38.102123212220874 40.0 38.0 40.0 34.0 40.0 22 38.144467720195316 40.0 38.0 40.0 34.0 40.0 23 38.12127477118936 40.0 38.0 40.0 34.0 40.0 24 38.079180569398105 40.0 38.0 40.0 34.0 40.0 25 38.081363193701634 40.0 38.0 40.0 34.0 40.0 26 37.99209625441599 40.0 38.0 40.0 34.0 40.0 27 37.90916565365835 40.0 37.0 40.0 34.0 40.0 28 37.76376341903422 40.0 37.0 40.0 34.0 40.0 29 37.828531711911836 40.0 37.0 40.0 34.0 40.0 30 38.012323160677184 40.0 38.0 40.0 34.0 40.0 31 38.06107470869834 40.0 38.0 40.0 34.0 40.0 32 38.05224557146213 40.0 38.0 40.0 35.0 40.0 33 37.9535844529641 40.0 37.0 40.0 34.0 40.0 34 37.60803135042181 40.0 37.0 40.0 33.0 40.0 35 37.5699870912711 40.0 37.0 40.0 33.0 40.0 36 37.64689209807897 40.0 37.0 40.0 33.0 40.0 37 37.616230445898516 40.0 36.0 40.0 34.0 40.0 38 37.55539064869784 40.0 36.0 40.0 34.0 40.0 39 37.50035578828772 40.0 36.0 40.0 34.0 40.0 40 37.32352159703327 40.0 35.0 40.0 33.0 40.0 41 37.27411320909632 40.0 35.0 40.0 33.0 40.0 42 37.181140141813565 40.0 35.0 40.0 33.0 40.0 43 37.06287417638433 40.0 35.0 40.0 33.0 40.0 44 36.76968695192069 40.0 35.0 40.0 32.0 40.0 45 36.773148475469995 39.0 35.0 40.0 32.0 40.0 46 36.603453427085064 39.0 35.0 40.0 32.0 40.0 47 36.60984792331394 39.0 35.0 40.0 32.0 40.0 48 36.60328351537074 39.0 35.0 40.0 32.0 40.0 49 36.53192686726132 39.0 35.0 40.0 32.0 40.0 50 36.012064872064464 38.0 35.0 40.0 31.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 1.0 13 2.0 14 1.0 15 13.0 16 25.0 17 52.0 18 111.0 19 267.0 20 473.0 21 735.0 22 1154.0 23 1793.0 24 2630.0 25 3786.0 26 5089.0 27 7516.0 28 10415.0 29 14194.0 30 19574.0 31 27134.0 32 37276.0 33 61468.0 34 116049.0 35 114082.0 36 149342.0 37 333676.0 38 620873.0 39 226121.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 0.0 100.0 0.0 0.0 2 100.0 0.0 0.0 0.0 3 0.0 0.0 100.0 0.0 4 0.0 0.0 100.0 0.0 5 0.0 0.0 100.0 0.0 6 0.0 100.0 0.0 0.0 7 99.58964610468843 0.31809981686025957 0.07400852523474045 0.018245553216576997 8 99.08623988797231 0.7973876929182167 0.08934619340742549 0.02702622570205468 9 97.8054020521686 1.0829306007576467 0.3862355546534143 0.7254317924203411 10 48.25350143569697 39.576771586199975 4.283713791129468 7.886013186973587 11 33.790536487685394 23.19916389752385 25.03734636674018 17.972953248050576 12 31.003813320622264 18.506236558158843 26.317043855467848 24.172906265751042 13 26.979984628121418 18.27064085224979 28.4119754688537 26.337399050775094 14 25.25709124829233 20.379484699963278 29.740080690959097 24.623343360785288 15 26.99247142860401 19.363378437861346 28.639018571692482 25.005131561842163 16 31.060830674424068 21.742769629364396 25.48031418842639 21.71608550778515 17 29.33713905164176 22.42794717000066 24.409813370797536 23.825100407560047 18 28.510615490930817 22.210939121430997 25.373406650048008 23.90503873759017 19 27.654328871535338 24.856943459311275 24.421216841557897 23.067510827595488 20 28.663593051181056 24.452519368795087 23.660776393903248 23.223111186120608 21 27.751543459767415 24.618781972481145 26.211960872411126 21.41771369534031 22 27.092593901879976 22.0971324832426 27.69196032504453 23.11831328983289 23 27.83456072690284 22.377429794532265 27.025484476455254 22.762525002109644 24 28.199984947418592 22.33563607419554 25.6198926705332 23.84448630785266 25 28.213498060269625 23.056563495665543 24.41374756820986 24.316190875854975 26 25.8948303505655 23.121905383122407 25.063460314781405 25.91980395153069 27 23.84830647055738 21.772247601279926 24.86561009708915 29.51383583107355 28 25.376713656568512 24.86555307973535 24.060354009346284 25.697379254349855 29 28.161498233602376 23.525759300100578 23.741855071009415 24.57088739528763 30 26.831169334698707 22.44379799435756 25.214556302356183 25.510476368587543 31 29.589269790153335 22.837616857066617 24.215498229040993 23.357615123739063 32 30.584450683410005 23.727771784620366 23.42044824762865 22.26732928434098 33 30.60680148610031 22.281697657499038 24.751974510962157 22.3595263454385 34 28.039823200589332 23.713916567646528 26.856428022432908 21.38983220933123 35 25.461156357548987 26.929239183237808 26.676481253834417 20.93312320537879 36 25.221683471581414 27.98212163854191 24.592154868255705 22.20404002162098 37 28.00430138917081 27.374487699076088 22.57311335278005 22.048097558973048 38 27.63910523807026 27.85166593304338 23.514926002878237 20.994302826008123 39 28.303357409861263 24.79097438096259 23.039059168048386 23.866609041127756 40 26.548249225134164 24.408045832829682 23.626565981622168 25.417138960413993 41 24.52065510658824 26.268351035321107 23.451750774865836 25.75924308322481 42 24.129230972738863 24.280498012375045 23.924253585821383 27.66601742906471 43 23.952477175953273 23.889473000002283 24.908430129794304 27.249619694250143 44 24.69364575802291 23.08632655435008 25.665734622989856 26.554293064637154 45 26.322118399956214 23.649258888435284 24.831285650100465 25.19733706150804 46 26.35889459315837 25.406476715253056 23.24090060050677 24.993728091081802 47 23.055195079174297 25.946944211940348 24.986771973917982 26.011088734967373 48 25.565270045591078 23.945521058789453 25.26353420927193 25.22567468634754 49 26.733099486159606 24.06183646054513 25.006214891564397 24.198849161730866 50 24.106880170048555 24.465063186631482 25.236108862093264 26.191947781226695 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 3.5 2 7.0 3 9.0 4 11.0 5 36.5 6 62.0 7 704.0 8 1346.0 9 2505.0 10 3664.0 11 4467.5 12 5271.0 13 4870.5 14 4470.0 15 4552.5 16 4635.0 17 4913.0 18 5191.0 19 5475.0 20 5759.0 21 7027.5 22 8296.0 23 10340.5 24 12385.0 25 14425.0 26 16465.0 27 18829.0 28 21193.0 29 23169.5 30 25146.0 31 27001.0 32 28856.0 33 33717.5 34 38579.0 35 44241.5 36 49904.0 37 53612.5 38 57321.0 39 60021.5 40 62722.0 41 67766.0 42 72810.0 43 78943.0 44 85076.0 45 89396.0 46 93716.0 47 104948.5 48 116181.0 49 113498.0 50 110815.0 51 118294.5 52 125774.0 53 129379.5 54 132985.0 55 138313.5 56 143642.0 57 139421.0 58 135200.0 59 131163.5 60 127127.0 61 109182.5 62 91238.0 63 73607.0 64 55976.0 65 45305.5 66 34635.0 67 30485.0 68 26335.0 69 21931.5 70 17528.0 71 18660.5 72 19793.0 73 14621.0 74 9449.0 75 6171.5 76 2894.0 77 1932.5 78 971.0 79 663.5 80 356.0 81 204.0 82 52.0 83 30.5 84 9.0 85 6.0 86 3.0 87 1.5 88 0.0 89 2.0 90 4.0 91 2.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1753852.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 7.785103929013629 #Duplication Level Percentage of deduplicated Percentage of total 1 64.7716564554142 5.04254077159766 2 9.5227219625646 1.4827076033133204 3 3.9555319818296324 0.9238268271924279 4 1.9836276313312886 0.6177098906550885 5 1.073986739017875 0.4180549190818296 6 0.646913372214619 0.3021772701455691 7 0.4849489848359352 0.26427647730521864 8 0.4176516459218755 0.26011691757003214 9 0.32526326089615754 0.22789874613298144 >10 9.359961641819478 21.456159643942552 >50 5.109007071681418 27.557953622566156 >100 2.2281671045322895 29.97586279199688 >500 0.0833516084527777 4.323128663058304 >1k 0.03423369632881941 4.93674560920262 >5k 0.002232632369270831 1.2838389113031743 >10k+ 7.442107897569438E-4 0.9270013349361789 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source AGTTTAGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGC 16000 0.9122776608288499 No Hit AGTTTAGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTG 9753 0.5560902516289857 No Hit AGTTTAGGGAAGAACGAAAGTCGGAGGTTCGAAGACGATCAGATACCGTC 6500 0.3706127997117203 No Hit AGTTTAGGGGATGCCGACTGGCGATGCGGCGGCGTTATTCCCATGACCCG 5906 0.3367444915534492 No Hit AGTTTAGGGGAGTCCCGCCCGGGAGCCGGCAGGGAGCGGAGCTGTGGAGC 4565 0.2602842201052312 No Hit AGTTTAGGGGCCGGTAGTGGTGGCGCACGCCGGTAGGATTTGCTGAAGGA 4386 0.25007811377470845 No Hit AGTTTAGGGAGAGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGA 3667 0.20908263639121202 No Hit AGTTTAGGGCGCGACCTCAGATCAGACGTGGCGACCCGCTGAATTTAAGC 3512 0.20024494655193256 No Hit AGTTTAGGGGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGC 3501 0.19961775566011272 No Hit AGTTTAGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCT 3374 0.1923765517272837 No Hit AGTTTAGGGAGTCCCGCCCGGGAGCCGGCAGGGAGCGGAGCTGTGGAGCC 2934 0.16728891605449034 No Hit AGTTTAGGGGGGGGCTGGTGAGATGGCTCAGCGGTTAGGAGCGCCGACTG 2650 0.15109598757477827 No Hit AGTTTAGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCTGACTG 2574 0.14676266868584123 No Hit AGTTTAGGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACT 2355 0.13427586820324633 No Hit AGTTTAGGGGGGGGCTGGAGAGATGGCTCAGCGGTTAAGAGCACTGACTG 2347 0.13381972937283193 No Hit AGTTTAGGGGGGGCTGGTGAGATGGCTCAGTGGGTTAGAGCACCCGATTG 2343 0.1335916599576247 No Hit AGTTTAGGGGGGGCTGGCAAGATGGCTCAGCGGGTAAGGGCACTGACTGC 2199 0.12538116101016505 No Hit AGTTTAGGGGGAGGTTCGAAGACGATCAGATACCGTCGTAGTTCCGACCA 2051 0.1169425926474982 No Hit AGTTTAGGGTACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAG 2031 0.11580224557146213 No Hit AGTTTAGGGGAGCTGGAGAGATGGCTCAGCGGTTAAGAGCACCAACTGCT 1770 0.10092071622919152 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.02286395887452305 0.0 0.0 0.0 0.0 7 0.02417535801196452 0.0 0.0 0.0 0.0 8 0.033184099912649416 0.0 0.0 0.0 0.0 9 0.05433753817311837 0.0 0.0 0.0 0.0 10 0.09419266848057875 0.0 0.0 0.0 0.0 11 0.11996451239899376 0.0 0.0 0.0 0.0 12 0.131767104635967 0.0 0.0 0.0 0.0 13 0.14203022832029155 0.0 0.0 0.0 0.0 14 0.15417492468007563 0.0 0.0 0.0 0.0 15 0.1701397837445805 0.0 0.0 0.0 0.0 16 0.1846221916102385 0.0 0.0 0.0 0.0 17 0.19864846064548206 0.0 0.0 0.0 0.0 18 0.21318788586494186 0.0 0.0 0.0 0.0 19 0.23759131329211358 0.0 0.0 0.0 0.0 20 0.2523588079267806 0.0 0.0 0.0 0.0 21 0.26632805960822237 0.0 0.0 0.0 0.0 22 0.2800692418744569 0.0 0.0 0.0 0.0 23 0.2943805976787095 0.0 0.0 0.0 0.0 24 0.3097752832051963 0.0 0.0 0.0 0.0 25 0.3238585695942417 0.0 0.0 0.0 0.0 26 0.33862606422890873 0.0 0.0 0.0 0.0 27 0.3505426911734856 0.0 0.0 0.0 0.0 28 0.3698715741122968 0.0 0.0 0.0 0.0 29 0.3844109993317566 0.0 0.0 0.0 0.0 30 0.39946358073543264 0.0 0.0 0.0 0.0 31 0.413261780355469 0.0 0.0 0.0 0.0 32 0.42745910145211796 0.0 0.0 0.0 0.0 33 0.43983186722710926 0.0 0.0 0.0 0.0 34 0.45516953539979427 0.0 0.0 0.0 0.0 35 0.4714194812333082 0.0 0.0 0.0 0.0 36 0.4865860973445878 0.0 0.0 0.0 0.0 37 0.5019807828710746 0.0 0.0 0.0 0.0 38 0.5156079304297055 0.0 0.0 0.0 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGACGAA 35 1.4466605E-7 44.0 32 CCGTATA 40 8.3164196E-9 44.0 31 ACGATAA 20 7.8576163E-4 44.0 29 AACGACG 20 7.8576163E-4 44.0 13 TCGTATC 20 7.8576163E-4 44.0 34 TCCGTAT 30 2.5284826E-6 44.0 43 CGATGTA 40 8.3164196E-9 44.0 21 TTATTCG 20 7.8576163E-4 44.0 34 CAATACG 20 7.8576163E-4 44.0 19 CGATAGG 30 2.5284826E-6 44.0 27 TCGGTAC 25 4.443801E-5 44.0 11 TCGAACG 30 2.5284826E-6 44.0 26 TAGGGTA 2255 0.0 42.73171 5 TAGGGAT 23350 0.0 42.690365 5 TAGGGAC 11840 0.0 42.58784 5 TTAGGGA 69775 0.0 42.58431 4 GTTTAGG 179040 0.0 42.556187 2 TTTAGGG 175515 0.0 42.54975 3 AGTTTAG 180595 0.0 42.544254 1 TAGGGGG 32195 0.0 42.469326 5 >>END_MODULE