##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1527837_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 2054751 Sequences flagged as poor quality 0 Sequence length 50 %GC 50 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.45357564006539 34.0 31.0 34.0 31.0 34.0 2 32.946397884707196 34.0 31.0 34.0 31.0 34.0 3 32.42595282834757 34.0 31.0 34.0 31.0 34.0 4 36.277424369181475 37.0 37.0 37.0 35.0 37.0 5 36.136746009613816 37.0 37.0 37.0 35.0 37.0 6 36.349525076274446 37.0 37.0 37.0 35.0 37.0 7 36.541290891207744 37.0 37.0 37.0 35.0 37.0 8 36.64352322982201 37.0 37.0 37.0 35.0 37.0 9 38.6393957224014 39.0 39.0 39.0 38.0 39.0 10 38.066865522878444 39.0 39.0 39.0 37.0 39.0 11 37.87792194772019 39.0 38.0 39.0 35.0 39.0 12 37.525234931142506 39.0 37.0 39.0 35.0 39.0 13 37.34605360941545 39.0 37.0 39.0 35.0 39.0 14 38.16597339531651 40.0 38.0 40.0 34.0 40.0 15 38.26691555327142 40.0 38.0 40.0 35.0 40.0 16 38.13817391985695 40.0 38.0 40.0 34.0 40.0 17 38.241992338731066 40.0 38.0 40.0 34.0 40.0 18 38.214691220493386 40.0 38.0 40.0 34.0 40.0 19 37.94665290344183 40.0 38.0 40.0 34.0 40.0 20 38.037276536183704 40.0 38.0 40.0 34.0 40.0 21 38.073165069636175 40.0 38.0 40.0 34.0 40.0 22 38.11855548433849 40.0 38.0 40.0 34.0 40.0 23 38.03219368186218 40.0 38.0 40.0 34.0 40.0 24 37.912766072385416 40.0 38.0 40.0 34.0 40.0 25 37.64199895753792 40.0 37.0 40.0 34.0 40.0 26 37.2718674914868 40.0 35.0 40.0 33.0 40.0 27 37.06139186694641 39.0 35.0 40.0 33.0 40.0 28 36.87400371139861 39.0 35.0 40.0 32.0 40.0 29 36.82829744333985 40.0 35.0 40.0 32.0 40.0 30 36.77179862669492 40.0 35.0 40.0 32.0 40.0 31 36.72282237604459 40.0 35.0 40.0 32.0 40.0 32 36.42391997862515 40.0 35.0 40.0 31.0 40.0 33 36.32932798183332 40.0 35.0 40.0 30.0 40.0 34 35.876901872781666 40.0 35.0 40.0 28.0 40.0 35 35.86638721674792 39.0 35.0 40.0 28.0 40.0 36 35.57286454660443 39.0 35.0 40.0 26.0 40.0 37 35.121109078423615 39.0 35.0 40.0 23.0 40.0 38 34.90948830296226 39.0 35.0 40.0 22.0 40.0 39 34.58780260965927 39.0 35.0 40.0 18.0 40.0 40 34.11264673919127 39.0 34.0 40.0 15.0 40.0 41 33.90844194746711 38.0 34.0 40.0 15.0 40.0 42 33.7683388400833 38.0 34.0 40.0 14.0 40.0 43 33.5834283570126 38.0 34.0 40.0 12.0 40.0 44 33.26491725761418 38.0 33.0 40.0 10.0 40.0 45 33.2845079525451 37.0 33.0 40.0 11.0 40.0 46 33.1905048348924 37.0 33.0 40.0 10.0 40.0 47 33.08659492074709 37.0 33.0 40.0 10.0 40.0 48 32.95935906589168 37.0 33.0 40.0 10.0 40.0 49 32.822728885397794 36.0 33.0 40.0 10.0 40.0 50 32.19227341901768 35.0 31.0 40.0 10.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 0.0 11 2.0 12 1.0 13 5.0 14 11.0 15 45.0 16 142.0 17 422.0 18 793.0 19 1611.0 20 2590.0 21 4177.0 22 6701.0 23 10035.0 24 14982.0 25 21574.0 26 29048.0 27 38153.0 28 49075.0 29 58422.0 30 60457.0 31 54459.0 32 53896.0 33 58930.0 34 93345.0 35 121122.0 36 172432.0 37 246308.0 38 560465.0 39 395547.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 100.0 0.0 0.0 0.0 2 100.0 0.0 0.0 0.0 3 0.0 100.0 0.0 0.0 4 0.0 0.0 0.0 100.0 5 0.0 100.0 0.0 0.0 6 0.0 0.0 100.0 0.0 7 99.27660334512551 0.3360991185793315 0.2580361318719397 0.12926140442321235 8 98.21803225792323 1.2327041086730217 0.35921627486736835 0.19004735853638713 9 95.3205522226294 2.530379593439789 1.0923951369290001 1.056673047001802 10 48.00435673227559 35.38263273749471 7.274166066837296 9.338844463392402 11 30.253787441884683 34.43083857849443 20.035761024085158 15.279612955535733 12 30.600982795482274 27.683110994957538 22.224736719923726 19.491169489636455 13 21.421330370443915 28.103307894727873 23.973951101617665 26.501410633210543 14 21.766871022328253 34.48948315391986 23.706716774927962 20.03692904882392 15 26.50905146170996 30.221910100055922 22.738375598795184 20.53066283943894 16 24.953923857440635 30.667365534802027 25.977502870177453 18.401207737579885 17 30.34956547046333 31.066099979997574 18.129641985817262 20.45469256372183 18 28.58127335136958 30.65884868774854 19.783954357486625 20.975923603395252 19 24.00602311423623 31.417675426365534 24.237292012511492 20.339009446886752 20 24.10953930670918 35.53909938479164 20.17704334977815 20.174317958721034 21 24.629066976971906 30.661817417292898 25.92951652049324 18.77959908524196 22 24.7151601337583 30.269020431186068 20.138498533398938 24.877320901656695 23 23.67075134651352 35.499532546766005 20.522097324688005 20.30761878203247 24 23.605439296537632 36.09493315735094 19.901778853009443 20.397848693101984 25 23.65683238504325 31.257996711037006 19.29659603523736 25.788574868682385 26 27.733676732606533 31.037970050872342 19.680584168106012 21.547769048415113 27 23.47101911618488 30.345185377692967 20.27681212954757 25.906983376574583 28 24.624248874924504 35.502160602428226 19.103239273274475 20.770351249372794 29 29.187332187695738 30.924866322002032 19.74618822426659 20.14161326603564 30 24.77025196727 34.266828438092986 19.831843371775946 21.13107622286107 31 29.60120228679777 30.496298578270554 19.72448243120456 20.17801670372712 32 27.264812135387693 30.864518377165894 22.458487670768868 19.412181816677542 33 29.668753050856285 30.744795841442592 19.959985419157846 19.62646568854328 34 24.9533885127687 31.908586490528535 21.145773867490515 21.99225112921225 35 25.10678909512637 35.88215798410611 20.494162066352565 18.516890854414964 36 28.1284204266113 32.31729781370103 20.04150381238408 19.51277794730359 37 25.792419616780816 31.74535503328627 22.744459060976244 19.717766288956668 38 29.04697454825427 30.917858173569453 20.16268637903084 19.872480899145444 39 26.710730399936537 28.978012420969744 20.090317512924923 24.220939666168796 40 26.00164204811191 29.65074600280034 22.59383253737314 21.753779411714607 41 27.649384280625732 29.275810061657104 20.96502203916679 22.109783618550374 42 27.233567473625758 28.117178188500695 22.135918172080217 22.513336165793323 43 25.284426190813384 30.083645171604733 22.345383941898554 22.28654469568332 44 25.20490317318254 28.043397959168775 21.73319297569389 25.01850589195479 45 24.629066976971906 31.255611993862033 21.801960432188622 22.313360596977443 46 24.824127108345486 29.26072307544807 23.930880189375745 21.984269626830695 47 26.787187352628127 29.595021489221807 21.901291202681005 21.716499955469057 48 28.205120717790138 28.926668000161577 21.254594838985355 21.61361644306293 49 27.340636408012454 28.772099393065144 21.930491821150106 21.956772377772293 50 23.61429681747326 30.81794339070768 22.603128067585804 22.964631724233254 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 168.5 6 337.0 7 373.5 8 410.0 9 807.0 10 1204.0 11 11608.5 12 22013.0 13 21730.5 14 21448.0 15 20873.0 16 20298.0 17 16858.0 18 13418.0 19 13665.5 20 13913.0 21 14203.0 22 14493.0 23 16526.0 24 18559.0 25 21794.5 26 25030.0 27 28929.0 28 32828.0 29 34474.5 30 36121.0 31 38501.5 32 40882.0 33 41654.5 34 42427.0 35 45182.5 36 47938.0 37 51060.0 38 54182.0 39 58313.5 40 62445.0 41 64766.0 42 67087.0 43 68444.5 44 69802.0 45 72241.0 46 74680.0 47 80639.0 48 86598.0 49 88871.5 50 91145.0 51 94475.5 52 97806.0 53 107036.0 54 116266.0 55 132714.5 56 149163.0 57 152555.0 58 155947.0 59 154986.0 60 154025.0 61 144957.0 62 135889.0 63 126733.0 64 117577.0 65 103727.5 66 89878.0 67 75372.5 68 60867.0 69 49614.5 70 38362.0 71 34238.5 72 30115.0 73 24292.5 74 18470.0 75 19039.0 76 19608.0 77 13802.0 78 7996.0 79 5606.5 80 3217.0 81 2428.5 82 1640.0 83 1077.0 84 514.0 85 310.0 86 106.0 87 69.0 88 32.0 89 21.0 90 10.0 91 6.0 92 2.0 93 2.5 94 3.0 95 1.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 2054751.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 18.669801443155194 #Duplication Level Percentage of deduplicated Percentage of total 1 76.98868704123343 14.373635004290438 2 9.059517615693622 3.382787901115335 3 3.3682012905344734 1.8865094794457309 4 1.6578436047344405 1.2380644369678668 5 0.931978631003327 0.8699927995047858 6 0.5919857264591779 0.6631353582104902 7 0.4279447416934152 0.559275034924088 8 0.30942806799305084 0.46215684722955075 9 0.26076604331370684 0.4381605226605703 >10 4.036979937417102 20.16374073690586 >50 1.543669813876842 19.94723662019915 >100 0.7829612037217333 25.092994671232006 >500 0.027574658025701616 3.544539692833488 >1k 0.011135919587302574 4.1802352271588505 >5k 5.302818851096465E-4 0.7410837754543698 >10k+ 7.954228276644697E-4 2.456451891867453 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GGACATGGGAAGCAGTGGTATCAACGCAGAGTGCAGTGCTGGACATGGGA 23207 1.1294312546873075 No Hit GGACATGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 15539 0.7562473506522202 No Hit GGACATGGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 10878 0.5294072128447681 No Hit GGACATGGGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 8019 0.39026626583951046 No Hit GGACATGGGGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGC 6952 0.33833783266196243 No Hit GGACATGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGC 4750 0.23117156288036847 No Hit GGACATGGGGAGTCCCGCCCGGGAGCCGGCAGGGAGCGGAGCTGTGGAGC 4172 0.20304163375513626 No Hit GGACATGGGAGATCGGAAGAGCTCGTATGCCGTCTTCTGCTTGAAAAAAA 4164 0.20265229217554828 Illumina Single End Adapter 2 (100% over 34bp) GGACATGGGGAATCCGCAGCGGCTTCTGAGCAGATCAGACTCTCCTCGTT 3907 0.19014469393128414 No Hit GGACATGGGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 3853 0.1875166382690652 No Hit GGACATGGGAGTCCCGCCCGGGAGCCGGCAGGGAGCGGAGCTGTGGAGCC 3466 0.16868223935649623 No Hit GGACATGGGAATCCGCAGCGGCTTCTGAGCAGATCAGACTCTCCTCGTTC 3396 0.16527550053510134 No Hit GGACATGGGGATCGGAAGAGCTCGTATGCCGTCTTCTGCTTGAAAAAAAA 2727 0.13271681094205576 Illumina Single End Adapter 2 (97% over 34bp) GGACATGATCGGAAGAGCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAAA 2703 0.1315487862032918 Illumina Single End Adapter 2 (97% over 34bp) GGACATGGGGCAAGCTCCGTTGGGCGCCTTGGATCCATTTCCATCTGGTT 2302 0.11203303952644382 No Hit GGACATGGGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 2206 0.10736094057138797 No Hit GGACATGGGAAGCAGTGGTATCAACGCAGATCGGAAGAGCTCGTATGCCG 2170 0.10560890346324203 Illumina Single End Adapter 2 (100% over 23bp) GGACATGGGATCGGAAGAGCTCGTATGCCGTCTTCTGCTTGAAAAAAAAA 2111 0.10273750931378059 Illumina Single End Adapter 2 (97% over 34bp) >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.03241268650070008 0.0 0.0 0.0 0.0 8 0.1134444027524503 0.0 0.0 0.0 0.0 9 0.20328497224237876 0.0 0.0 0.0 0.0 10 0.461564442601561 0.0 0.0 0.0 0.0 11 0.6695215137989956 0.0 0.0 0.0 0.0 12 0.7686576135015873 0.0 0.0 0.0 0.0 13 0.8504680129125135 0.0 0.0 0.0 0.0 14 0.9529135160416031 0.0 0.0 0.0 0.0 15 1.0400286944744157 0.0 0.0 0.0 0.0 16 1.138726784899971 0.0 0.0 0.0 0.0 17 1.2322660993959853 0.0 0.0 0.0 0.0 18 1.315877203612506 0.0 0.0 0.0 0.0 19 1.4065451239590587 0.0 0.0 0.0 0.0 20 1.5100126487345669 0.0 0.0 0.0 0.0 21 1.609976099293783 0.0 0.0 0.0 0.0 22 1.7133949563718427 0.0 0.0 0.0 0.0 23 1.8424130223078126 0.0 0.0 0.0 0.0 24 1.9786825751636086 0.0 0.0 0.0 0.0 25 2.1017631820108615 0.0 0.0 0.0 0.0 26 2.2664060024791324 0.0 0.0 0.0 0.0 27 2.4051089402073536 0.0 0.0 0.0 0.0 28 2.6237729048434577 0.0 0.0 0.0 0.0 29 2.7201349457914854 0.0 0.0 0.0 0.0 30 2.8477416485014486 0.0 0.0 0.0 0.0 31 2.913978384728855 0.0 0.0 0.0 0.0 32 2.990386669722998 0.0 0.0 0.0 0.0 33 3.053362670221355 0.0 0.0 0.0 0.0 34 3.1183827140125495 0.0 0.0 0.0 0.0 35 3.257231654833116 0.0 0.0 0.0 0.0 36 3.3097927680774943 0.0 0.0 0.0 0.0 37 3.3662959648152015 0.0 0.0 0.0 0.0 38 3.411605591139754 0.0 0.0 0.0 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCGTTAG 35 1.4468242E-7 44.0 14 TATATCG 20 7.8579324E-4 44.0 19 TACGGTT 20 7.8579324E-4 44.0 42 TAACGCG 30 2.5286936E-6 44.0 37 CGTTCGA 40 8.3182385E-9 44.0 21 ATGTACG 25 4.4440676E-5 44.0 32 CCGTATA 20 7.8579324E-4 44.0 12 TTACGGT 20 7.8579324E-4 44.0 41 CGTCATA 25 4.4440676E-5 44.0 26 CGATATT 25 4.4440676E-5 44.0 10 ATGGGAT 15675 0.0 41.445614 5 ATGGGGT 18515 0.0 41.029438 5 ATGGGAC 8820 0.0 40.8322 5 ATGGGAG 18535 0.0 40.545994 5 ATGGGGC 18340 0.0 40.485275 5 CATGGGG 103750 0.0 40.204338 4 GGACATG 224750 0.0 39.937706 1 ATGGGCG 2865 0.0 39.93019 5 ACATGGG 212915 0.0 39.911324 3 TGGGGTC 3775 0.0 39.862255 6 >>END_MODULE