##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1527835_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 3086989 Sequences flagged as poor quality 0 Sequence length 52 %GC 51 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.032390785973 33.0 31.0 34.0 30.0 34.0 2 32.6181622286312 34.0 31.0 34.0 31.0 34.0 3 32.03669789558693 33.0 31.0 34.0 30.0 34.0 4 36.10774447204056 37.0 35.0 37.0 35.0 37.0 5 35.860933096943334 37.0 35.0 37.0 35.0 37.0 6 36.07064618629998 37.0 35.0 37.0 35.0 37.0 7 36.40316470191504 37.0 36.0 37.0 35.0 37.0 8 36.53142787356871 37.0 37.0 37.0 35.0 37.0 9 38.514302124173426 39.0 39.0 39.0 37.0 39.0 10 37.71938643124417 39.0 38.0 39.0 35.0 39.0 11 37.50113460073878 39.0 37.0 39.0 35.0 39.0 12 37.14132023146179 39.0 37.0 39.0 34.0 39.0 13 36.82076450547767 39.0 37.0 39.0 33.0 39.0 14 37.771485418315386 40.0 38.0 40.0 33.0 40.0 15 37.90635373174313 40.0 38.0 40.0 33.0 40.0 16 37.76680610134989 40.0 37.0 40.0 33.0 40.0 17 37.91911794956185 40.0 38.0 40.0 33.0 40.0 18 37.9352226392773 40.0 38.0 40.0 33.0 40.0 19 37.56998032710839 40.0 37.0 40.0 33.0 40.0 20 37.78760889656555 40.0 37.0 40.0 33.0 40.0 21 37.87130015688427 40.0 38.0 40.0 33.0 40.0 22 37.81018040556672 40.0 37.0 40.0 33.0 40.0 23 37.77444526041395 40.0 37.0 40.0 33.0 40.0 24 37.68540023952142 40.0 37.0 40.0 33.0 40.0 25 37.426149558679995 40.0 37.0 40.0 33.0 40.0 26 36.94884594664899 39.0 35.0 40.0 32.0 40.0 27 36.757153005728235 39.0 35.0 40.0 31.0 40.0 28 36.63526497826847 39.0 35.0 40.0 31.0 40.0 29 36.49554047649668 39.0 35.0 40.0 31.0 40.0 30 36.16537344318363 39.0 35.0 40.0 30.0 40.0 31 36.07053313115142 39.0 35.0 40.0 30.0 40.0 32 35.556231006977995 38.0 35.0 40.0 27.0 40.0 33 35.38134149490005 38.0 35.0 40.0 26.0 40.0 34 35.159332605331606 38.0 35.0 40.0 25.0 40.0 35 35.15226617263618 38.0 34.0 40.0 25.0 40.0 36 34.76502410601398 38.0 34.0 40.0 24.0 40.0 37 34.33096878544109 38.0 34.0 40.0 21.0 40.0 38 33.944978747899654 38.0 33.0 40.0 18.0 40.0 39 33.78591890026171 38.0 33.0 40.0 18.0 40.0 40 33.37771757528129 38.0 33.0 40.0 15.0 40.0 41 32.988293771050046 37.0 32.0 40.0 12.0 40.0 42 33.02897969510096 37.0 32.0 40.0 13.0 40.0 43 32.861866368814404 37.0 32.0 40.0 11.0 40.0 44 32.65964180630381 37.0 32.0 40.0 10.0 40.0 45 32.64362134105434 36.0 32.0 40.0 10.0 40.0 46 32.34966920840988 36.0 31.0 40.0 10.0 40.0 47 32.126816778420654 35.0 31.0 40.0 10.0 40.0 48 32.14368305167268 35.0 31.0 40.0 10.0 40.0 49 32.063461515411944 35.0 31.0 39.0 10.0 40.0 50 31.613018705282073 35.0 30.0 39.0 10.0 40.0 51 31.818897637795274 35.0 31.0 39.0 10.0 40.0 52 31.517937057760815 35.0 30.0 39.0 9.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 4.0 13 6.0 14 15.0 15 74.0 16 243.0 17 734.0 18 1555.0 19 3100.0 20 5531.0 21 9319.0 22 14988.0 23 23556.0 24 33971.0 25 45506.0 26 59943.0 27 73956.0 28 87532.0 29 90192.0 30 84137.0 31 85799.0 32 97556.0 33 118647.0 34 174997.0 35 205457.0 36 312412.0 37 434082.0 38 794584.0 39 329092.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 100.0 0.0 0.0 0.0 2 100.0 0.0 0.0 0.0 3 0.0 100.0 0.0 0.0 4 0.0 0.0 0.0 100.0 5 0.0 100.0 0.0 0.0 6 0.0 0.0 100.0 0.0 7 99.30903543873983 0.32539798489725746 0.24301997836726985 0.12254659799565207 8 98.28499550856839 1.1883424268761567 0.3444780658434481 0.18218399871201355 9 95.24688944469838 2.5572167571701745 1.0843576054206867 1.1115361927107612 10 47.601271011979634 35.94424858656769 7.210229774061391 9.244250627391287 11 30.09712700628347 34.53028177295092 19.91876226316323 15.453828957602376 12 31.0376227450114 26.86572579299764 22.311061037146555 19.785590424844404 13 21.81264656271856 27.163718432427196 24.002223525901776 27.021411478952466 14 21.813035291023063 34.0487121917182 23.77154567120259 20.36670684605614 15 27.11354008712049 29.30240438174545 22.91307160472551 20.67098392640855 16 25.172133752339253 29.649506363644313 26.627240978182947 18.551118905833484 17 31.018315905887583 30.10574381703336 18.26326559634647 20.612674680732585 18 29.340888483891586 29.558576334415186 20.032173746002982 21.068361435690246 19 24.223701477394314 30.321034509679173 24.938929163660774 20.516334849265743 20 24.249681485745494 35.00410918211889 20.340273321349702 20.405936010785915 21 24.608218558601926 29.756989739840346 26.4899874926668 19.14480420889093 22 24.95315014080063 29.416139804838952 20.1300037026371 25.500706351723313 23 23.989330703802313 35.000578233352954 20.661395294897392 20.34869576794734 24 23.72748979669186 35.58765515523379 20.091292842313337 20.593562205761017 25 23.93646365438944 30.14691662328567 19.32886706107472 26.587752661250168 26 28.4591231131695 29.94824406565751 19.728836092386466 21.86379672878653 27 23.61637828965377 29.324918229381446 20.464925530994766 26.593777949970022 28 24.900671819692263 34.98574176973096 19.144059146307292 20.969527264269487 29 29.94568493765284 30.039983945521026 19.76913425995363 20.245196856872504 30 24.886871964882285 33.97229468585732 19.83544482989735 21.305388519363042 31 30.26502523980487 29.547594759812878 19.745583803505617 20.441796196876634 32 27.72063651668341 30.08705246439168 22.738467807951373 19.453843210973538 33 30.319123262182018 29.785917604500696 20.162883638393268 19.73207549492402 34 25.17838579923673 31.058678861505502 21.188057359452852 22.574877979804917 35 25.472264397443595 35.490278714954925 20.454332684696965 18.583124202904514 36 29.00052445927083 31.435874892978237 20.01630067356897 19.54729997418196 37 26.136374311667453 31.120000751541387 22.960528851900673 19.783096084890488 38 29.584783100943994 30.22226512630916 20.10658282229059 20.086368950456254 39 26.722025896431767 28.48701436901784 20.05569180842562 24.735267926124777 40 25.979943563128995 29.22200241076337 22.848445524101315 21.949608502006324 41 28.204344103590913 28.8113433510777 20.975487764938585 22.008824780392803 42 27.792421676915595 27.679042588101222 22.03010765506453 22.498428079918654 43 25.440453464524815 29.796478056773125 22.336879075370856 22.426189403331207 44 25.154219856306582 27.68267071894328 21.73833466850708 25.424774756243057 45 24.609870653896078 31.02913551036301 21.892206289040875 22.468787546700035 46 24.964520443707443 28.785007008447387 24.25583635056685 21.994636197278318 47 27.549984791005087 28.90661417970715 21.9194496643817 21.623951364906063 48 28.89806215700801 28.250894318055554 21.244260993479408 21.60678253145703 49 28.03388674206484 28.104440929332757 21.872024811231917 21.989647517370486 50 23.896942943431284 30.328614711617046 22.566779473461033 23.207662871490633 51 22.935812210539137 31.40374001980571 22.955637354068966 22.70481041558619 52 25.794779314082426 28.83026146189701 22.707920242022244 22.667038981998317 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 235.0 6 470.0 7 509.5 8 549.0 9 1092.0 10 1635.0 11 14937.0 12 28239.0 13 28328.5 14 27438.0 15 26458.0 16 21782.0 17 17106.0 18 17206.5 19 17307.0 20 16763.5 21 16220.0 22 17775.0 23 19330.0 24 23142.5 25 26955.0 26 31368.5 27 35782.0 28 40412.5 29 45043.0 30 48518.5 31 51994.0 32 55352.5 33 58711.0 34 62815.0 35 66919.0 36 70329.0 37 73739.0 38 80867.5 39 90405.0 40 92814.0 41 97243.0 42 101672.0 43 102031.5 44 102391.0 45 110118.5 46 117846.0 47 120468.5 48 123091.0 49 124199.0 50 125307.0 51 133682.0 52 142057.0 53 154813.0 54 167569.0 55 191097.0 56 214625.0 57 221613.0 58 228601.0 59 232881.5 60 237162.0 61 217696.0 62 198230.0 63 188635.0 64 159847.5 65 140655.0 66 121664.0 67 102673.0 68 85008.5 69 67344.0 70 56947.5 71 46551.0 72 42430.0 73 38309.0 74 34832.0 75 31355.0 76 23826.5 77 16298.0 78 11068.0 79 5838.0 80 4391.5 81 2945.0 82 2098.5 83 1252.0 84 831.0 85 410.0 86 230.0 87 50.0 88 34.5 89 14.0 90 9.0 91 6.0 92 3.0 93 2.5 94 2.0 95 1.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 52 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 52 3086989.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 19.397471822915655 #Duplication Level Percentage of deduplicated Percentage of total 1 78.9116419196185 15.306863506358098 2 8.656976089771858 3.358468995460083 3 3.4856375506987716 2.0283766852372853 4 1.7029475772452098 1.3213151058206576 5 0.9794817208469265 0.9499734540594598 6 0.5942038639202392 0.6915631624476268 7 0.4074734050454589 0.553276772506975 8 0.29176558692264665 0.45276118009827904 9 0.23925032040010102 0.41767662137260525 >10 2.4186344985204573 11.929020805613883 >50 1.3387111812795771 18.631093773835296 >100 0.9241087130253465 31.761589182325455 >500 0.03387871617480483 4.390478746363191 >1k 0.013898960481971211 4.853187802984492 >5k 5.212110180739204E-4 0.5840985702374658 >10k+ 8.686850301232007E-4 2.7702556352792618 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GGACATGGGAAGCAGTGGTATCAACGCAGAGTGCAGTGCTGGACATGGGAAG 28374 0.9191480760054539 No Hit GGACATGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 19536 0.6328496797364681 No Hit GGACATGGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 13877 0.44953189013631084 No Hit GGACATGGGGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAA 10293 0.3334317031903904 No Hit GGACATGGGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 10122 0.32789232485117376 No Hit GGACATGGGGAGTCCCGCCCGGGAGCCGGCAGGGAGCGGAGCTGTGGAGCCT 6109 0.19789510101914845 No Hit GGACATGGGGAATCCGCAGCGGCTTCTGAGCAGATCAGACTCTCCTCGTTCG 5707 0.18487270281818302 No Hit GGACATGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTC 5516 0.1786854439714557 No Hit GGACATGGGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 4998 0.16190533882692812 No Hit GGACATGGGAGTCCCGCCCGGGAGCCGGCAGGGAGCGGAGCTGTGGAGCCTC 4994 0.16177576272542596 No Hit GGACATGGGAATCCGCAGCGGCTTCTGAGCAGATCAGACTCTCCTCGTTCGC 4853 0.1572082051474754 No Hit GGACATGGGAGATCGGAAGAGCTCGTATGCCGTCTTCTGCTTGAAAAAAAAA 4724 0.15302937587403131 Illumina Single End Adapter 2 (100% over 34bp) GGACATGGGAAGCAGTGGTATCAACGCAGAGTGCAGTGCTGGACATGGGGAG 3895 0.12617472883771208 No Hit GGACATGGGGCAAGCTCCGTTGGGCGCCTTGGATCCATTTCCATCTGGTTCT 3442 0.11150023534259436 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.029672927243990826 0.0 0.0 0.0 0.0 8 0.1000651443850302 0.0 0.0 0.0 0.0 9 0.18007838706260373 0.0 0.0 0.0 0.0 10 0.41866038395342514 0.0 0.0 0.0 0.0 11 0.600261290208679 0.0 0.0 0.0 0.0 12 0.6851012426672074 0.0 0.0 0.0 0.0 13 0.7582793459905429 0.0 0.0 0.0 0.0 14 0.8536797507214959 0.0 0.0 0.0 0.0 15 0.935539452845475 0.0 0.0 0.0 0.0 16 1.0287370638508917 0.0 0.0 0.0 0.0 17 1.1138037744870488 0.0 0.0 0.0 0.0 18 1.1918409816167146 0.0 0.0 0.0 0.0 19 1.2748344746288374 0.0 0.0 0.0 0.0 20 1.3615856745845223 0.0 0.0 3.2394025375535835E-5 0.0 21 1.4460045047131687 0.0 0.0 3.2394025375535835E-5 0.0 22 1.5369669279676734 0.0 0.0 3.2394025375535835E-5 0.0 23 1.6435108774278107 0.0 0.0 3.2394025375535835E-5 0.0 24 1.7560153275570467 0.0 0.0 3.2394025375535835E-5 0.0 25 1.8530678275821522 0.0 0.0 3.2394025375535835E-5 0.0 26 1.9896086445400356 0.0 0.0 3.2394025375535835E-5 0.0 27 2.096055411924046 0.0 0.0 3.2394025375535835E-5 0.0 28 2.2733803068297296 0.0 0.0 3.2394025375535835E-5 0.0 29 2.344873920833537 0.0 0.0 3.2394025375535835E-5 0.0 30 2.4408898120466254 0.0 0.0 3.2394025375535835E-5 0.0 31 2.4897076082875578 0.0 0.0 3.2394025375535835E-5 0.0 32 2.5529731398459794 0.0 0.0 3.2394025375535835E-5 0.0 33 2.6026007867213004 0.0 0.0 3.2394025375535835E-5 0.0 34 2.6568283851999475 0.0 0.0 3.2394025375535835E-5 0.0 35 2.773511664602627 0.0 0.0 3.2394025375535835E-5 0.0 36 2.816109807971457 0.0 0.0 3.2394025375535835E-5 0.0 37 2.8651219683646425 0.0 0.0 3.2394025375535835E-5 0.0 38 2.9071046252513373 0.0 0.0 3.2394025375535835E-5 0.0 39 2.9445521185854564 0.0 0.0 3.2394025375535835E-5 0.0 40 2.9803799106507993 0.0 0.0 3.2394025375535835E-5 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCGTTAG 60 0.0 46.0 14 TACGACG 20 6.3131173E-4 46.0 21 CGTACCG 45 3.110472E-10 46.0 32 CGATAAC 20 6.3131173E-4 46.0 40 ACGGTAC 20 6.3131173E-4 46.0 32 CGAACGT 90 0.0 43.444447 38 ATGGGAT 23795 0.0 43.158226 5 ATGGGAC 14125 0.0 42.66195 5 ATGGGAG 28210 0.0 42.396313 5 ATGGGGC 27930 0.0 42.33548 5 TGGGATT 8400 0.0 42.30357 6 ATGGGGT 27645 0.0 42.214508 5 GGACATG 338760 0.0 41.62623 1 TAACGGG 105 0.0 41.619045 29 ACATGGG 320910 0.0 41.610855 3 ATGGGCT 9135 0.0 41.59387 5 CATGGGG 155790 0.0 41.537003 4 GACATGG 334890 0.0 41.52074 2 ATGGGGG 55375 0.0 41.211014 5 CATGGGA 116435 0.0 41.057674 4 >>END_MODULE