##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1527831_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 5299231 Sequences flagged as poor quality 0 Sequence length 50 %GC 56 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.661486921404254 34.0 31.0 34.0 31.0 34.0 2 33.00194160247025 34.0 31.0 34.0 31.0 34.0 3 33.20586251099452 34.0 34.0 34.0 31.0 34.0 4 36.52089123874766 37.0 37.0 37.0 35.0 37.0 5 36.59359046623935 37.0 37.0 37.0 35.0 37.0 6 36.411360818201736 37.0 37.0 37.0 35.0 37.0 7 36.65740274390756 37.0 37.0 37.0 35.0 37.0 8 36.720839872804184 37.0 37.0 37.0 35.0 37.0 9 38.67200278681945 39.0 39.0 39.0 39.0 39.0 10 38.20602310033286 39.0 39.0 39.0 37.0 39.0 11 37.171173326846855 39.0 35.0 39.0 35.0 39.0 12 36.96142968668473 39.0 35.0 39.0 34.0 39.0 13 36.88307246843929 39.0 35.0 39.0 33.0 39.0 14 37.57917384616749 40.0 35.0 40.0 33.0 40.0 15 37.658765394450626 40.0 35.0 40.0 34.0 40.0 16 37.71275907768504 40.0 35.0 40.0 34.0 40.0 17 37.51516399266233 40.0 35.0 40.0 33.0 40.0 18 37.479576187563815 40.0 35.0 40.0 33.0 40.0 19 37.46699266365252 40.0 35.0 40.0 33.0 40.0 20 37.35517058984596 40.0 35.0 40.0 33.0 40.0 21 37.35714842398831 40.0 35.0 40.0 33.0 40.0 22 37.416755751919474 40.0 35.0 40.0 33.0 40.0 23 37.41678292567356 40.0 35.0 40.0 33.0 40.0 24 37.40863117686321 40.0 35.0 40.0 34.0 40.0 25 37.380840352119016 40.0 35.0 40.0 34.0 40.0 26 37.304932168459914 39.0 35.0 40.0 34.0 40.0 27 37.22641398346288 39.0 35.0 40.0 33.0 40.0 28 37.072916617524314 39.0 35.0 40.0 33.0 40.0 29 37.16617901729515 40.0 35.0 40.0 33.0 40.0 30 37.279207869972076 40.0 35.0 40.0 33.0 40.0 31 37.31167465619068 40.0 35.0 40.0 34.0 40.0 32 37.31647818334396 40.0 35.0 40.0 34.0 40.0 33 37.24793050161429 40.0 35.0 40.0 33.0 40.0 34 36.83237850925917 40.0 35.0 40.0 32.0 40.0 35 36.84946098783012 40.0 35.0 40.0 32.0 40.0 36 36.9274358864522 39.0 35.0 40.0 33.0 40.0 37 36.914155091559515 39.0 35.0 40.0 33.0 40.0 38 36.86107059684698 39.0 35.0 40.0 33.0 40.0 39 36.764400344125406 39.0 35.0 40.0 33.0 40.0 40 36.62483820765692 39.0 35.0 40.0 33.0 40.0 41 36.5123124468437 39.0 35.0 40.0 33.0 40.0 42 36.45564196012591 39.0 35.0 40.0 32.0 40.0 43 36.38897889146557 38.0 35.0 40.0 32.0 40.0 44 36.12200468332103 38.0 35.0 40.0 31.0 40.0 45 36.09512550028485 38.0 35.0 40.0 31.0 40.0 46 35.96303859937414 37.0 35.0 40.0 31.0 40.0 47 35.8823516091297 37.0 35.0 40.0 31.0 40.0 48 35.820131071847975 37.0 35.0 40.0 31.0 40.0 49 35.78141035935214 37.0 35.0 40.0 31.0 40.0 50 35.31086585959359 36.0 34.0 40.0 30.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 3.0 13 6.0 14 26.0 15 57.0 16 204.0 17 466.0 18 1007.0 19 1856.0 20 2946.0 21 4421.0 22 6523.0 23 9463.0 24 13420.0 25 18698.0 26 24726.0 27 32125.0 28 41769.0 29 55492.0 30 73940.0 31 96216.0 32 126728.0 33 189935.0 34 542176.0 35 502351.0 36 334280.0 37 599800.0 38 1500851.0 39 1119746.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 0.0 0.0 0.0 100.0 2 100.0 0.0 0.0 0.0 3 0.0 0.0 0.0 100.0 4 0.0 0.0 100.0 0.0 5 0.0 0.0 100.0 0.0 6 100.0 0.0 0.0 0.0 7 99.42619976370156 0.4465931000177195 0.09501378596252928 0.03219335031818767 8 99.22217016016097 0.602596867356792 0.08355929379187281 0.09167367869036093 9 93.17142430665884 3.5399664592843756 2.008725416952007 1.2798838171047837 10 48.499169030374404 38.083884246601066 6.178972005560807 7.237974717463723 11 38.131174126962954 21.260367777890792 24.43811186943917 16.17034622570709 12 34.226362277847485 16.655643054624342 24.53210663962375 24.585888027904428 13 26.779451584578972 17.03920814170962 27.538184313912716 28.643155959798694 14 25.647362796601996 19.018174523812984 29.53668183176012 25.797780847824903 15 28.458147984113168 20.39888429094712 26.875559868969667 24.267407855970045 16 34.3674582217684 21.09628736697834 23.356011466569395 21.18024294468386 17 31.143575360273974 21.193320313834217 24.71590689290578 22.94719743298603 18 30.558301761142324 20.80086714468571 24.704810943323665 23.936020150848304 19 29.015398649351198 25.031179052205875 23.078820304304532 22.874601994138395 20 30.925958879694054 23.902713431439395 23.342669908143275 21.82865778072328 21 29.703347523442552 24.031052807473387 24.596059315021368 21.669540354062693 22 27.056680488168944 21.55544832825744 27.706397399924633 23.681473783648986 23 28.377324936391712 21.743456739289154 26.884429080370342 22.99478924394879 24 30.126880673818523 21.982114008617476 24.002369400390357 23.88863591717364 25 27.888688000202293 23.143716512829883 22.745941816840972 26.221653670126855 26 25.068241033463156 23.630164452162965 25.827955037249744 25.47363947712413 27 24.692092116761845 21.092135821216324 25.19046631482945 29.025305747192377 28 25.29980293367094 24.919804401808488 23.498956735420666 26.2814359290999 29 29.39807681529641 24.056641425897457 22.297405038580127 24.24787672022601 30 28.140516991993742 21.63349738858336 25.929026305892304 24.296959313530586 31 30.539449969250253 21.946203137776028 24.345192727020205 23.16915416595351 32 32.43357385250803 22.13713650150371 23.19734693581012 22.23194271017814 33 32.498073777119735 21.918123591894748 23.3948095487817 22.188993082203815 34 27.437377234545917 23.106748884885373 28.102417124295958 21.35345675627275 35 25.23996406271023 27.74015701523485 25.99630021789954 21.023578704155376 36 25.730299358529567 29.244847035352866 23.318270141460147 21.70658346465742 37 28.95820167114814 26.796906947441997 21.563204170567392 22.68168721084248 38 28.04744688427434 27.890197653206663 21.944070752907354 22.11828470961164 39 29.776339246203836 24.851681309986297 22.085940393993013 23.28603904981685 40 27.509991544056113 23.854027122048464 21.992926898261274 26.64305443563415 41 24.258916057820464 26.822325729903074 22.440010635505416 26.478747576771045 42 23.42734257102587 24.249650562506144 23.332555233014 28.990451633453983 43 23.717252559852554 22.870563672351704 24.284561288232197 29.12762247956354 44 24.995777689253405 22.661344636608593 23.766316282494575 28.57656139164343 45 27.4813836196233 23.725178238125494 22.847050826808648 25.94638731544256 46 25.871225466487495 26.71472521201661 22.277760678860766 25.13628864263513 47 23.948965425360775 25.09118775912958 24.52684172477101 26.433005090738636 48 25.17025583523345 23.505184054063694 26.63478908543523 24.68977102526763 49 28.403423062704757 22.905134726151775 24.517783806744788 24.173658404398676 50 24.77000908244989 23.59472534788538 24.34889137688091 27.286374192783818 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 3.5 8 7.0 9 75.5 10 144.0 11 334.0 12 524.0 13 2348.0 14 4172.0 15 8667.5 16 13163.0 17 15676.5 18 18190.0 19 15636.0 20 13082.0 21 13195.0 22 13308.0 23 14467.5 24 15627.0 25 15926.0 26 16225.0 27 19117.5 28 22010.0 29 25545.5 30 29081.0 31 34620.0 32 40159.0 33 48432.5 34 56706.0 35 62902.5 36 69099.0 37 79811.0 38 90523.0 39 99069.5 40 107616.0 41 119884.5 42 132153.0 43 141133.0 44 150113.0 45 159693.5 46 169274.0 47 179599.5 48 189925.0 49 208454.0 50 226983.0 51 241555.5 52 256128.0 53 273718.5 54 291309.0 55 304357.0 56 317405.0 57 336677.5 58 355950.0 59 382931.0 60 409912.0 61 442436.5 62 474961.0 63 477473.5 64 479986.0 65 505189.5 66 530393.0 67 415944.0 68 301495.0 69 242777.5 70 184060.0 71 151894.0 72 119728.0 73 100803.5 74 81879.0 75 66036.5 76 50194.0 77 44967.5 78 39741.0 79 29104.5 80 18468.0 81 11876.5 82 5285.0 83 4266.0 84 3247.0 85 1975.5 86 704.0 87 443.0 88 182.0 89 133.5 90 85.0 91 53.0 92 21.0 93 15.0 94 9.0 95 7.0 96 5.0 97 2.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 5299231.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 7.046758154808779 #Duplication Level Percentage of deduplicated Percentage of total 1 60.923148347929924 4.293106924374001 2 10.330250555293404 1.455895546834634 3 4.078782686956044 0.8622658548300111 4 1.914438070041833 0.5396232832777466 5 1.0298829166715748 0.3628667920776834 6 0.7355299809767439 0.310986113493253 7 0.5308762145190943 0.26186694056995097 8 0.45719746022260366 0.25774079449451953 9 0.3728110508611852 0.23643983815729983 >10 11.924301090137691 24.73170665644511 >50 5.186508802869059 25.07071691184241 >100 2.4051281720939377 28.71287898466649 >500 0.06772450504645107 3.157084695161033 >1k 0.03932390615600384 4.963893156687668 >5k 0.0021846614531113246 0.9515514080599949 >10k+ 0.0019115787714724089 3.8313760990281707 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGCTTGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGC 82599 1.5586978563493459 No Hit CGCTTGGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTG 44708 0.8436695814921071 No Hit CGCTTGGGGGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGC 20855 0.3935476675766729 No Hit CGCTTGGGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACT 15565 0.29372186266271466 No Hit CGCTTGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGT 14448 0.2726433325892002 No Hit CGCTTGGGGGGGCTGGTGAGATGGCTCAGTGGGTTAGAGCACCCGACTGC 10820 0.20418056884102617 No Hit CGCTTGGGGGAGCCACCCCTGAGCATTGCCTTCTGAGCTGTTCTGTGGGA 10105 0.19068804511447038 No Hit CGCTTGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCT 9071 0.1711757800329897 No Hit CGCTTGGGGGGCTTTGCAGACGCCACTGTCGCTTTTCGCCGCTTGCTGCA 7198 0.1358310290681799 No Hit CGCTTGGGGGGTCTCTTGCTGCAGCAACGAGAGTGGGAGCACCTGGAGCG 6378 0.12035708577338862 No Hit CGCTTGGGGGGGGCTGGAGAGATGGCTCAACGGTTAAGAGCACTGACTGC 5635 0.10633618349530337 No Hit CGCTTGGGGAGCCACCCCTGAGCATTGCCTTCTGAGCTGTTCTGTGGGAC 5605 0.10577006361866467 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0013020757162690209 0.0 0.0 0.0 0.0 8 0.004547829675664261 0.0 0.0 0.0 0.0 9 0.013964290290421384 0.0 0.0 0.0 0.0 10 0.04087385509331448 0.0 0.0 0.0 0.0 11 0.053517199004912225 0.0 0.0 0.0 0.0 12 0.064103640698056 0.0 0.0 0.0 0.0 13 0.0706140192794011 0.0 0.0 0.0 0.0 14 0.08408767234340228 0.0 0.0 0.0 0.0 15 0.0972027828188656 0.0 0.0 0.0 0.0 16 0.1103745052819928 0.0 0.0 0.0 0.0 17 0.1229046252182628 0.0 0.0 0.0 0.0 18 0.13558571045496978 0.0 0.0 0.0 0.0 19 0.15228624681581157 0.0 0.0 0.0 0.0 20 0.1664581143943338 0.0 0.0 0.0 0.0 21 0.17849759710418361 0.0 0.0 0.0 0.0 22 0.1887821081964534 0.0 0.0 0.0 0.0 23 0.20133109879527802 0.0 0.0 0.0 0.0 24 0.2134460641553463 0.0 0.0 0.0 0.0 25 0.2253345815647591 0.0 0.0 0.0 0.0 26 0.23807227878912998 0.0 0.0 0.0 0.0 27 0.24943241764701332 0.0 0.0 0.0 0.0 28 0.26383073317619105 0.0 0.0 0.0 0.0 29 0.2749832947459735 0.0 0.0 0.0 0.0 30 0.2875134146822435 0.0 0.0 0.0 0.0 31 0.29979821600530343 0.0 0.0 0.0 0.0 32 0.3113093201636237 0.0 0.0 0.0 0.0 33 0.3218768911942129 0.0 0.0 0.0 0.0 34 0.3342560458300459 0.0 0.0 0.0 0.0 35 0.3492582225609716 0.0 0.0 0.0 0.0 36 0.3652228030821831 0.0 0.0 0.0 0.0 37 0.37920596403515905 0.0 0.0 0.0 0.0 38 0.39186817860931145 0.0 0.0 0.0 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGCTTGG 547970 0.0 42.312172 1 GCTTGGG 545600 0.0 42.18871 2 CTTGGGG 509280 0.0 42.103596 3 TTGGGGG 253315 0.0 41.83574 4 TGGGGGG 116790 0.0 41.679253 5 TTGGGGA 201815 0.0 41.240936 4 TGGGGGA 60170 0.0 40.84461 5 TGGGGAG 66115 0.0 40.719048 5 TTGGGGC 36070 0.0 40.669807 4 TGGGGGT 43860 0.0 40.589146 5 TGGGGAC 37220 0.0 40.435787 5 TGGGGGC 37100 0.0 40.21671 5 TTGGGGT 26235 0.0 40.209644 4 CTTGGGA 20830 0.0 39.91263 3 TGGGGAA 33295 0.0 39.665413 5 TGGGGAT 71695 0.0 39.127136 5 TTGGGTA 4830 0.0 38.9441 4 TGGGGTA 7390 0.0 37.45061 5 TGGGGCA 13985 0.0 37.298534 5 TTGGGAT 6555 0.0 37.287567 4 >>END_MODULE