SRR1527829_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1527829_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	7998891
Sequences flagged as poor quality	0
Sequence length	52
%GC	56

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGCTTGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTC	117320	1.4667033217479772	No Hit
CGCTTGGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCT	55684	0.6961465033090212	No Hit
CGCTTGGGGGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAA	30028	0.3754020401078099	No Hit
CGCTTGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGTTC	20846	0.2606111272175105	No Hit
CGCTTGGGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGC	20313	0.25394770350039775	No Hit
CGCTTGGGGGGGCTGGTGAGATGGCTCAGTGGGTTAGAGCACCCGACTGCTC	15483	0.19356433285564212	No Hit
CGCTTGGGGGAGCCACCCCTGAGCATTGCCTTCTGAGCTGTTCTGTGGGACC	14153	0.176937027895492	No Hit
CGCTTGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTCT	13390	0.167398205576248	No Hit
CGCTTGGGGGGCTTTGCAGACGCCACTGTCGCTTTTCGCCGCTTGCTGCAGC	10135	0.12670506448956487	No Hit
CGCTTGGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGTT	9556	0.11946656105202584	No Hit
CGCTTGGGGGGTCTCTTGCTGCAGCAACGAGAGTGGGAGCACCTGGAGCGCG	9020	0.11276563213575481	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGCTTGG	826180	44.290127	1
GCTTGGG	822050	44.17382	2
CTTGGGG	768020	44.088776	3
TTGGGGG	381205	43.78269	4
TGGGGGG	175640	43.501476	5
TTGGGGA	304035	43.220646	4
TGGGGGA	91260	42.675762	5
TGGGGAG	100570	42.592422	5
TGGGGAC	56215	42.43227	5
TGGGGGT	67070	42.316986	5
TTGGGGC	54575	42.135406	4
TGGGGGC	55055	42.081375	5
TTGGGGT	41295	41.911854	4
TGGGGAT	106195	41.025093	5
TGGGGAA	51590	40.99787	5
CTTGGGA	31760	40.53243	3
TTGGGTA	7420	40.296497	4
TGGGGTA	11640	39.281788	5
TGGGGCA	20370	39.08984	5
CTTGGGT	18710	38.956173	3