##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1527825_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1975121 Sequences flagged as poor quality 0 Sequence length 50 %GC 55 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.469718564077844 33.0 31.0 34.0 31.0 34.0 2 32.910246005181456 34.0 31.0 34.0 31.0 34.0 3 33.27733338868859 34.0 34.0 34.0 31.0 34.0 4 35.41682813356751 35.0 35.0 37.0 35.0 37.0 5 36.16513823710041 37.0 35.0 37.0 35.0 37.0 6 36.43973761607517 37.0 37.0 37.0 35.0 37.0 7 36.67011337533245 37.0 37.0 37.0 35.0 37.0 8 36.72710127632687 37.0 37.0 37.0 35.0 37.0 9 38.66930127318782 39.0 39.0 39.0 39.0 39.0 10 38.21610169706059 39.0 39.0 39.0 37.0 39.0 11 37.11782974308916 39.0 35.0 39.0 35.0 39.0 12 36.98758860849538 39.0 35.0 39.0 34.0 39.0 13 36.8589666152099 39.0 35.0 39.0 33.0 39.0 14 37.51587067323977 40.0 35.0 40.0 33.0 40.0 15 37.5954278244219 40.0 35.0 40.0 33.0 40.0 16 37.624373899118076 40.0 35.0 40.0 34.0 40.0 17 37.33802637914335 40.0 35.0 40.0 33.0 40.0 18 37.28308290985717 40.0 35.0 40.0 33.0 40.0 19 37.2751279541861 40.0 35.0 40.0 33.0 40.0 20 37.17451133373601 40.0 35.0 40.0 32.0 40.0 21 37.217240867774684 40.0 35.0 40.0 33.0 40.0 22 37.35835222247143 40.0 35.0 40.0 33.0 40.0 23 37.34351363789864 39.0 35.0 40.0 34.0 40.0 24 37.329219830076234 39.0 35.0 40.0 34.0 40.0 25 37.27443381949764 39.0 35.0 40.0 34.0 40.0 26 37.178941948366706 39.0 35.0 40.0 33.0 40.0 27 37.08797081292741 39.0 35.0 40.0 33.0 40.0 28 36.90069165382779 39.0 35.0 40.0 33.0 40.0 29 36.959674875615214 39.0 35.0 40.0 33.0 40.0 30 37.05400783040634 40.0 35.0 40.0 33.0 40.0 31 37.08227799714549 40.0 35.0 40.0 33.0 40.0 32 37.05566798186035 40.0 35.0 40.0 33.0 40.0 33 36.96171576323678 39.0 35.0 40.0 33.0 40.0 34 36.403561604580176 39.0 35.0 40.0 31.0 40.0 35 36.403878547187745 39.0 35.0 40.0 31.0 40.0 36 36.5240489063708 39.0 35.0 40.0 32.0 40.0 37 36.46891456270274 39.0 35.0 40.0 32.0 40.0 38 36.38972954062055 39.0 35.0 40.0 32.0 40.0 39 36.22804273763481 39.0 35.0 40.0 32.0 40.0 40 36.066987288373724 38.0 35.0 40.0 31.0 40.0 41 35.95940856281717 38.0 35.0 40.0 31.0 40.0 42 35.88983662266767 38.0 35.0 40.0 31.0 40.0 43 35.78683027520846 37.0 35.0 40.0 31.0 40.0 44 35.52250672237296 37.0 35.0 40.0 30.0 40.0 45 35.47213208709745 37.0 35.0 40.0 30.0 40.0 46 35.31743422301722 37.0 35.0 40.0 30.0 40.0 47 35.22572844904185 36.0 35.0 40.0 29.0 40.0 48 35.1616078204829 36.0 35.0 40.0 29.0 40.0 49 35.10534493836074 36.0 35.0 40.0 29.0 40.0 50 34.52986728408032 35.0 34.0 40.0 27.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 0.0 12 1.0 13 1.0 14 8.0 15 33.0 16 79.0 17 196.0 18 432.0 19 769.0 20 1328.0 21 1993.0 22 3175.0 23 4545.0 24 6458.0 25 8980.0 26 11942.0 27 15519.0 28 20673.0 29 25824.0 30 31639.0 31 39992.0 32 52740.0 33 79135.0 34 231811.0 35 178732.0 36 135365.0 37 234920.0 38 551568.0 39 337262.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 0.0 0.0 100.0 0.0 2 100.0 0.0 0.0 0.0 3 100.0 0.0 0.0 0.0 4 0.0 100.0 0.0 0.0 5 0.0 0.0 100.0 0.0 6 100.0 0.0 0.0 0.0 7 98.74549457982575 1.0548720812547687 0.1397889040722062 0.05984443484728277 8 98.59861750242138 1.1864083263759535 0.12196721112276158 0.0930069600799141 9 93.23833830939978 3.59051420140842 1.9678288064376814 1.2033186827541198 10 52.42605389745742 33.04830438236442 6.017200971484785 8.508440748693372 11 38.03513810039993 22.05930674627023 21.611384821486887 18.29417033184296 12 35.82383054000236 16.773655892474434 25.19683604194376 22.205677525579446 13 25.857048758025456 17.28835853600868 27.591119733930224 29.263472972035636 14 23.718951902187257 19.14839647798793 32.63901300224138 24.49363861758343 15 29.317039310503002 19.150117891511456 28.685331177178515 22.84751162080703 16 35.14696061659007 20.72607197229942 23.907851721489468 20.21911568962104 17 32.03702456710247 21.34355312915006 25.072641119202316 21.54678118454515 18 32.27680734496773 21.33038937867604 23.60802198953887 22.784781286817367 19 29.055485714546098 25.735284066140757 22.855511130710475 22.353719088602674 20 31.8070133424737 24.522041940721607 22.527784373716848 21.143160343087843 21 30.459906000695653 25.246301365840374 23.665486823338924 20.62830581012505 22 28.73763177040799 22.072622386172796 27.57127284860016 21.61847299481905 23 31.475084311290296 21.445875974180822 25.447301709616777 21.631738004912105 24 33.881974825846115 20.950311398643425 23.156910386756053 22.01080338875441 25 29.704711761962937 21.879368403252254 20.799637085525394 27.616282749259412 26 26.501161194681238 21.441015512467338 25.67989505453084 26.377928238320592 27 25.04327582968335 20.866265914847748 23.8657277199726 30.22473053549631 28 25.668503347389855 26.216165996918672 21.460963657416432 26.65436699827504 29 31.746206941245624 24.429743797974908 20.482441328910987 23.341607931868477 30 29.233145716135873 21.075316398337115 25.51975296703341 24.171784918493604 31 32.68549116737658 21.515441332455072 22.864877645470834 22.93418985469751 32 35.85901825761561 21.138198621755325 22.317721294037177 20.68506182659189 33 35.808337818290624 20.743994924867895 21.916935721912733 21.530731534928744 34 28.726037544028948 22.602007674466527 28.337706905045312 20.334247876459212 35 25.694780218528386 28.64528299785178 26.480402972779892 19.179533810839942 36 26.442228096405234 30.552153513632835 22.36389568031528 20.641722709646647 37 31.11196731744536 27.731009897621462 20.570081529182264 20.58694125575091 38 29.80419933766083 28.486457285401755 20.55985430766014 21.149489069277276 39 31.1412313473453 24.84425004847804 21.131819265756377 22.882699338420277 40 28.478255256260248 23.197515493987456 20.450443289297212 27.873785960455084 41 23.90648471663255 27.16694318980964 21.778969490983084 27.14760260257473 42 23.515217548697017 24.050678414132605 22.01049960989732 30.423604427273066 43 24.711043019642847 21.764337476033113 22.91449485879599 30.610124645528046 44 25.5661805023591 21.29991023334773 22.289874898803667 30.84403436548951 45 29.29228133364994 22.241574060525913 21.861040412207657 26.60510419361649 46 26.980220452316594 27.15985501647747 21.176373498129987 24.683551033075947 47 24.279474523333 24.11072536821795 23.66108202991108 27.948718078537972 48 25.381533587056186 22.370781334409383 26.917540748136442 25.330144330397985 49 29.238664365373058 21.733959590323835 24.60598616489825 24.421389879404856 50 25.480312345420863 21.8127395739299 24.49900537739207 28.207942703257167 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 6.0 6 12.0 7 38.5 8 65.0 9 374.5 10 684.0 11 1525.0 12 2366.0 13 2674.0 14 2982.0 15 3671.0 16 4360.0 17 4255.0 18 4150.0 19 4301.0 20 4452.0 21 4990.5 22 5529.0 23 5760.0 24 5991.0 25 7120.0 26 8249.0 27 9959.0 28 11669.0 29 14022.0 30 16375.0 31 18309.5 32 20244.0 33 23819.0 34 27394.0 35 31543.0 36 35692.0 37 36536.0 38 37380.0 39 42059.5 40 46739.0 41 49687.5 42 52636.0 43 57309.5 44 61983.0 45 65496.0 46 69009.0 47 72481.5 48 75954.0 49 78241.0 50 80528.0 51 87860.5 52 95193.0 53 99688.5 54 104184.0 55 113126.5 56 122069.0 57 132989.5 58 143910.0 59 152270.0 60 160630.0 61 179214.0 62 197798.0 63 213848.5 64 229899.0 65 173473.0 66 117047.0 67 98233.0 68 79419.0 69 63984.5 70 48550.0 71 43241.5 72 37933.0 73 31439.5 74 24946.0 75 23063.0 76 21180.0 77 15965.0 78 10750.0 79 7648.0 80 4546.0 81 3208.0 82 1870.0 83 1153.0 84 436.0 85 313.5 86 191.0 87 149.5 88 108.0 89 57.5 90 7.0 91 8.0 92 9.0 93 6.0 94 3.0 95 1.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1975121.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 9.162525075898843 #Duplication Level Percentage of deduplicated Percentage of total 1 66.90408380502907 6.130103455436166 2 9.56107368726129 1.7520715482409637 3 3.841023326516045 1.0558041763894699 4 1.8298528291551468 0.670642897293539 5 0.9759647619720196 0.44711508023811375 6 0.7107893404699145 0.3907575093442315 7 0.545228626702281 0.34969696749802776 8 0.4394206184330859 0.32209619482081014 9 0.36377934270327134 0.29998236146514506 >10 9.303039167262611 24.32791310507717 >50 3.733186698676689 23.393041340343096 >100 1.6932828490539003 26.833471079624587 >500 0.0729138027085151 4.567728449622278 >1k 0.022995891623454758 3.993081559624457 >5k 0.0016826262163503482 1.0860836499028748 >10k+ 0.0016826262163503482 4.380410625079078 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source TGGATGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGC 45837 2.320718578760491 No Hit TGGATGGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTG 26428 1.3380446058747795 No Hit TGGATGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGT 12973 0.6568205188441619 No Hit TGGATGGGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACT 7813 0.3955707017443489 No Hit TGGATGGGGGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGC 7179 0.36347140251154236 No Hit TGGATGGGGGGGCTGGTGAGATGGCTCAGTGGGTTAGAGCACCCGACTGC 6142 0.3109682900440024 No Hit TGGATGGGGGGGGCTGGTGAGATGGCTCAGTGGGTTAGAGCACCCGACTG 4954 0.2508200763396268 No Hit TGGATGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCT 4544 0.23006185443828503 No Hit TGGATGGGGGATGCCGACTGGCGATGCGGCGGCGTTATTCCCATGACCCG 4146 0.20991119025112892 No Hit TGGATGGGGAGTCCCGCCCGGGAGCCGGCAGGGAGCGGAGCTGTGGAGCC 3446 0.17447032359030157 No Hit TGGATGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCTGACTGC 3347 0.16945797244827027 No Hit TGGATGGGGGAGTCCCGCCCGGGAGCCGGCAGGGAGCGGAGCTGTGGAGC 3162 0.16009145768790875 No Hit TGGATGGGGGAATCCGCAGCGGCTTCTGAGCAGATCAGACTCTCCTCGTT 2727 0.1380674905486803 No Hit TGGATGGGGGCTCTTGAGTCACCCCCGCGCAGCCTAGGCTTGCCGTGCGA 2084 0.1055125230302346 No Hit TGGATGGGGATGCCACAACTAGATACATCAACATGATTTATCACAATTAT 2045 0.10353796045913136 No Hit TGGATGGGGGGTCTCTTGCTGCAGCAACGAGAGTGGGAGCACCTGGAGCG 2026 0.10257599407833748 No Hit TGGATGGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCTGACTG 2011 0.10181654693560546 No Hit TGGATGGGGGGGGCTGGAGAGATGGCTCAGAGGTTAGGAGCACTGACTGC 1995 0.10100646998335797 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.013973827426269073 0.0 0.0 0.0 0.0 8 0.02485923647209462 0.0 0.0 0.0 0.0 9 0.04136455437413708 0.0 0.0 0.0 0.0 10 0.0815646231294184 0.0 0.0 0.0 0.0 11 0.10920849912486374 0.0 0.0 0.0 0.0 12 0.12647326416963822 0.0 0.0 0.0 0.0 13 0.13756119245352563 0.0 0.0 0.0 0.0 14 0.15431965940314543 0.0 0.0 0.0 0.0 15 0.1726982802572602 0.0 0.0 0.0 0.0 16 0.19234264634926165 0.0 0.0 0.0 0.0 17 0.2114807143461084 0.0 0.0 0.0 0.0 18 0.22793540243863541 0.0 0.0 0.0 0.0 19 0.25228834081557533 0.0 0.0 0.0 0.0 20 0.27421104833577287 0.0 0.0 0.0 0.0 21 0.2955768279513002 0.0 0.0 0.0 0.0 22 0.3160819008050646 0.0 0.0 0.0 0.0 23 0.3412955459437675 0.0 0.0 0.0 0.0 24 0.3655472247016765 0.0 0.0 0.0 0.0 25 0.38671048507914196 0.0 0.0 0.0 0.0 26 0.4095445291706179 0.0 0.0 0.0 0.0 27 0.4272143326915161 0.0 0.0 0.0 0.0 28 0.45121286240184777 0.0 0.0 0.0 0.0 29 0.4694902236369316 0.0 0.0 0.0 0.0 30 0.4886282916337784 0.0 0.0 0.0 0.0 31 0.5040197537264806 0.0 0.0 0.0 0.0 32 0.5193099562001517 0.0 0.0 0.0 0.0 33 0.5341951201976993 0.0 0.0 0.0 0.0 34 0.5489790245762158 0.0 0.0 0.0 0.0 35 0.5728256648580011 0.0 0.0 0.0 0.0 36 0.5914574347596933 0.0 0.0 0.0 0.0 37 0.6087728296139832 0.0 0.0 0.0 0.0 38 0.6259869648492421 0.0 0.0 0.0 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTCTAG 20 7.857858E-4 44.0 24 CGCGATA 25 4.444005E-5 44.0 29 ATATGCG 20 7.857858E-4 44.0 38 ATCGTTC 35 1.4467878E-7 44.0 36 AATAGCG 25 4.444005E-5 44.0 36 CGTCATA 30 2.5286445E-6 44.0 33 CGATAAC 25 4.444005E-5 44.0 41 AATCGAT 35 1.4467878E-7 44.0 26 TGGATGG 203250 0.0 42.23892 1 GGATGGG 201170 0.0 42.145252 2 ATGGGGG 100745 0.0 42.13946 4 GATGGGG 188360 0.0 42.139416 3 ATGGGGA 61775 0.0 41.941563 4 ATGGGGT 10230 0.0 41.720432 4 TGGGGGG 45990 0.0 41.67993 5 TGGGGGA 22170 0.0 41.380245 5 TGGGGAC 10630 0.0 41.185326 5 CGATTAG 70 0.0 40.857143 32 TGGGGGT 14205 0.0 40.840553 5 ATGGGGC 16525 0.0 40.804844 4 >>END_MODULE