##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1527822_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 807545 Sequences flagged as poor quality 0 Sequence length 50 %GC 56 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.367360332860706 33.0 31.0 34.0 31.0 34.0 2 32.75101201790612 34.0 31.0 34.0 31.0 34.0 3 31.166951686902898 31.0 31.0 33.0 30.0 34.0 4 35.96521432242166 37.0 35.0 37.0 35.0 37.0 5 36.11406299339356 37.0 37.0 37.0 35.0 37.0 6 36.335627116755106 37.0 37.0 37.0 35.0 37.0 7 36.63337275322118 37.0 37.0 37.0 35.0 37.0 8 36.695397779690296 37.0 37.0 37.0 35.0 37.0 9 38.57821297884328 39.0 39.0 39.0 38.0 39.0 10 38.09037267273031 39.0 39.0 39.0 37.0 39.0 11 37.285254691689005 39.0 37.0 39.0 35.0 39.0 12 37.12979338612709 39.0 37.0 39.0 33.0 39.0 13 37.10997901045762 39.0 37.0 39.0 33.0 39.0 14 37.95938306843581 40.0 37.0 40.0 34.0 40.0 15 38.059401024091535 40.0 37.0 40.0 34.0 40.0 16 38.0367967110192 40.0 37.0 40.0 34.0 40.0 17 37.98483552000198 40.0 37.0 40.0 34.0 40.0 18 37.90625414063613 40.0 37.0 40.0 34.0 40.0 19 37.78372598431047 40.0 36.0 40.0 34.0 40.0 20 37.623889690357814 40.0 36.0 40.0 33.0 40.0 21 37.45051235534862 39.0 35.0 40.0 33.0 40.0 22 37.25026097616851 39.0 35.0 40.0 33.0 40.0 23 37.06936084057235 39.0 35.0 40.0 33.0 40.0 24 36.88364611260054 39.0 35.0 40.0 33.0 40.0 25 36.75353695459696 38.0 35.0 40.0 33.0 40.0 26 36.52033261304324 38.0 35.0 40.0 33.0 40.0 27 36.268695862150096 37.0 35.0 40.0 32.0 40.0 28 35.98697162387236 37.0 35.0 40.0 32.0 40.0 29 35.77465652068925 37.0 35.0 40.0 31.0 40.0 30 35.7588877400021 36.0 35.0 40.0 31.0 40.0 31 35.675263917181084 36.0 35.0 40.0 32.0 40.0 32 35.504119275086836 35.0 35.0 40.0 31.0 40.0 33 35.327034406751324 35.0 35.0 40.0 31.0 40.0 34 34.92507414447492 35.0 35.0 40.0 30.0 40.0 35 34.76953977796903 35.0 35.0 39.0 30.0 40.0 36 34.580087796964875 35.0 35.0 39.0 29.0 40.0 37 34.346258103263594 35.0 34.0 39.0 29.0 40.0 38 34.17186163000204 35.0 34.0 39.0 28.0 40.0 39 33.97452773529648 35.0 34.0 38.0 27.0 40.0 40 33.71364939415141 35.0 34.0 37.0 26.0 40.0 41 33.58403927954479 35.0 34.0 37.0 25.0 40.0 42 33.48070510002538 35.0 34.0 37.0 25.0 40.0 43 33.298482437511225 35.0 34.0 37.0 23.0 40.0 44 33.02842318384734 35.0 34.0 36.0 23.0 40.0 45 33.0094409599465 35.0 34.0 36.0 23.0 39.0 46 32.85813545994341 35.0 34.0 36.0 23.0 39.0 47 32.788084874527115 35.0 33.0 36.0 23.0 39.0 48 32.6361589756608 35.0 33.0 35.0 23.0 39.0 49 32.51133992532924 35.0 33.0 35.0 23.0 39.0 50 31.97274950621947 35.0 33.0 35.0 20.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 2.0 13 2.0 14 2.0 15 11.0 16 39.0 17 106.0 18 221.0 19 511.0 20 780.0 21 1425.0 22 2312.0 23 3626.0 24 5131.0 25 6998.0 26 9260.0 27 12338.0 28 14977.0 29 15282.0 30 15182.0 31 17417.0 32 22250.0 33 33680.0 34 75720.0 35 109768.0 36 161545.0 37 127792.0 38 137295.0 39 33873.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 0.0 0.0 100.0 0.0 2 100.0 0.0 0.0 0.0 3 0.0 0.0 100.0 0.0 4 100.0 0.0 0.0 0.0 5 0.0 0.0 0.0 100.0 6 100.0 0.0 0.0 0.0 7 99.07497415004737 0.7005182373737686 0.1758415939668997 0.04866601861196589 8 98.1158944702772 1.4636955216117986 0.2534843259508758 0.1669256821601273 9 91.52740714139769 4.795646063067693 2.4269854930684978 1.2499613024661165 10 47.71758849352049 35.167328136512516 7.591775071358252 9.523308298608747 11 31.072447975035445 27.69319356816029 22.386616225721166 18.847742231083096 12 29.003461107430546 22.611495334625314 26.12114495167452 22.26389860626962 13 22.321728200905213 20.974806357540444 28.429375452761146 28.274089988793193 14 22.407048523611685 23.683509897281265 28.36015330415023 25.549288274956815 15 25.454680544118286 23.86665758564538 26.80296454067575 23.875697329560584 16 27.740249769362695 23.39671473416342 25.491087183995937 23.37194831247794 17 29.82471565052102 24.185277600629068 22.11220427344606 23.877802475403847 18 27.97255880477249 24.247317486951193 22.540415704387993 25.239708003888328 19 27.051867078614816 23.6244419815614 23.328111746094645 25.99557919372914 20 27.733315171290762 24.990433969623986 23.315480871035053 23.960769988050203 21 29.97517166226031 23.006395928400273 24.54104724814097 22.477385161198445 22 28.282634404274688 22.742138209016215 24.876384597762353 24.098842788946744 23 29.58596734547301 24.461051706096875 22.70585540124699 23.247125547183128 24 27.192911850113617 24.864001386919615 23.294677076819248 24.64840968614752 25 28.851395278281704 24.67899621692909 21.420106619445356 25.04950188534385 26 28.52150654143113 24.344278027849843 21.157582549579278 25.97663288113975 27 29.208774743203165 23.971667213591815 21.418001473602093 25.401556569602935 28 30.840510435950936 25.078850095041144 20.461646100217326 23.618993368790594 29 30.0393166944257 25.44403098279353 21.027558835730517 23.48909348705026 30 28.159545288497856 24.23220996972305 22.03196106718511 25.576283674593984 31 28.71567528744528 25.388430366109628 21.048981790488455 24.846912555956635 32 29.46770768192485 25.365645258158985 21.871598486771635 23.29504857314453 33 30.141602015986724 25.127763777869966 21.579850039316696 23.150784166826615 34 28.372784179209827 25.801534279823418 23.686853364208808 22.13882817675795 35 28.34504578692209 26.011429703607845 23.29405791627711 22.34946659319295 36 28.60323573299321 26.27692574407618 21.68027787925131 23.4395606436793 37 29.17719755555418 26.79256264356785 22.135113213505132 21.89512658737284 38 30.743549895052286 24.837872812041432 21.693032586419335 22.725544706486943 39 28.220099189518848 25.00380783733414 21.90936727984199 24.866725693305018 40 27.809967246407318 25.025726120525793 22.94571819527085 24.218588437796036 41 28.332910240296204 24.668718151929614 22.625364530769183 24.373007077004996 42 27.666322000631542 23.741091827700004 22.89630918400832 25.696276987660134 43 27.01694642403829 23.485997684339573 24.057978193165706 25.43907769845643 44 27.084806419456502 23.408602616572452 24.00658786816834 25.500003095802708 45 27.096446637648675 23.180503872849194 23.38334086645326 26.339708623048868 46 27.61183587292349 24.279018506708606 23.68858701372679 24.420558606641116 47 27.536545950999635 23.76969704474673 23.87247769474147 24.821279309512164 48 28.975475050925954 23.425939111752285 23.397333894705557 24.2012519426162 49 26.7032796933917 23.60103771306862 24.30390876050251 25.391773833037167 50 25.064609402571993 24.52383458506956 24.56866180832028 25.842894204038164 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 8.0 8 16.0 9 44.0 10 72.0 11 598.0 12 1124.0 13 1725.5 14 2327.0 15 1880.5 16 1434.0 17 1723.5 18 2013.0 19 2191.5 20 2370.0 21 2344.0 22 2318.0 23 2598.5 24 2879.0 25 3824.5 26 4770.0 27 5620.0 28 6470.0 29 7342.0 30 8214.0 31 8660.0 32 9106.0 33 12150.0 34 15194.0 35 14180.0 36 13166.0 37 13274.5 38 13383.0 39 15944.0 40 18505.0 41 18576.0 42 18647.0 43 19783.0 44 20919.0 45 22474.5 46 24030.0 47 25023.5 48 26017.0 49 27969.0 50 29921.0 51 32027.0 52 34133.0 53 36131.0 54 38129.0 55 41045.5 56 43962.0 57 44503.5 58 45045.0 59 55386.5 60 65728.0 61 65196.0 62 64664.0 63 67754.5 64 70845.0 65 65979.5 66 61114.0 67 56502.0 68 51890.0 69 43245.5 70 34601.0 71 29638.0 72 24675.0 73 20678.0 74 16681.0 75 14963.5 76 13246.0 77 12780.5 78 12315.0 79 8569.5 80 4824.0 81 3147.5 82 1471.0 83 1130.0 84 789.0 85 592.0 86 395.0 87 227.0 88 59.0 89 61.0 90 63.0 91 40.0 92 17.0 93 8.5 94 0.0 95 2.0 96 4.0 97 2.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 807545.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 14.006004965314775 #Duplication Level Percentage of deduplicated Percentage of total 1 74.89550993589864 10.489868840419787 2 8.429507229733451 2.3612744022960706 3 3.119680904814329 1.3108279872908155 4 1.5294682180742094 0.8568695782655407 5 0.8551039877666361 0.5988295349259986 6 0.5528530579735932 0.4645957605040561 7 0.37330606273776995 0.3659968597801121 8 0.31464330317491873 0.35255165332567634 9 0.2426486064964721 0.305868382867467 >10 5.762237615741426 22.779413307956112 >50 2.680689286686379 25.99955869604032 >100 1.2043547690517387 28.54559857351956 >500 0.028442326649192353 2.6618142313837816 >1k 0.011554695201234392 2.906932191424688 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source TGTGCGGGGGAATCCGCAGCGGCTTCTGAGCAGATCAGACTCTCCTCGTT 3963 0.49074664569776294 No Hit TGTGCGGGGGAGTCCCGCCCGGGAGCCGGCAGGGAGCGGAGCTGTGGAGC 2353 0.2913769511296584 No Hit TGTGCGGGGAATCCGCAGCGGCTTCTGAGCAGATCAGACTCTCCTCGTTC 2235 0.2767647623352259 No Hit TGTGCGGGGAGGCATTCAGGCAGCGAGAGCAGAGCAGCGTAGAGCAGCAC 1939 0.24011045824071722 No Hit TGTGCGGGGAGTCCCGCCCGGGAGCCGGCAGGGAGCGGAGCTGTGGAGCC 1819 0.22525060522942997 No Hit TGTGCGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGC 1623 0.2009795119776607 No Hit TGTGCGGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1581 0.19577856342371014 No Hit TGTGCGGGGGAGGCATTCAGGCAGCGAGAGCAGAGCAGCGTAGAGCAGCA 1430 0.1770799150511736 No Hit TGTGCGGGGATATTATTTGATCTTATCTTGGATCCTTTTGAAAAGTTAAG 1360 0.16841166746125602 No Hit TGTGCGGGGATTATTTGATCTTATCTTGGATCCTTTTGAAAAGTTAAGAA 1346 0.1666780179432725 No Hit TGTGCGGGGGGCTTTGCAGACGCCACTGTCGCTTTTCGCCGCTTGCTGCA 1314 0.1627153904735959 No Hit TGTGCGGGGGATGCCGACTGGCGATGCGGCGGCGTTATTCCCATGACCCG 1287 0.15937192354605625 No Hit TGTGCGGGGAAGCAGTGGTATCAACGCAGAGTGCAGTGCTTGTGCGGGGA 1101 0.13633915137856092 No Hit TGTGCGGGGTATCCGCAGCGGCTTCTGAGCAGATCAGACTCTCCTCGTTC 987 0.12222229101783802 No Hit TGTGCGGGGGGTCTCTTGCTGCAGCAACGAGAGTGGGAGCACCTGGAGCG 890 0.11021057650038078 No Hit TGTGCGGGGGCTTTGCAGACGCCACTGTCGCTTTTCGCCGCTTGCTGCAG 862 0.10674327746441375 No Hit TGTGCGGGATCGGAAGAGCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAA 844 0.10451429951272065 Illumina Single End Adapter 2 (97% over 34bp) TGTGCGGGGGGACAATCCGCAGCGGCTTCTGAGCAGATCAGACTCTCCTC 828 0.10253298577788234 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.019317808914673485 0.0 0.0 0.0 0.0 8 0.027366895962454105 0.0 0.0 0.0 0.0 9 0.03504448668495254 0.0 0.0 0.0 0.0 10 0.07727123565869394 0.0 0.0 0.0 0.0 11 0.1056287884885672 0.0 0.0 0.0 0.0 12 0.14215926047464847 0.0 0.0 0.0 0.0 13 0.16754484270226427 0.0 0.0 0.0 0.0 14 0.2090285990254413 0.0 0.0 0.0 0.0 15 0.2534843259508758 0.0 0.0 0.0 0.0 16 0.2937297611897789 0.0 0.0 0.0 0.0 17 0.3290219120915862 0.0 0.0 0.0 0.0 18 0.36864818678835237 0.0 0.0 0.0 0.0 19 0.41545672377390735 0.0 0.0 0.0 0.0 20 0.46251292497631713 0.0 0.0 0.0 0.0 21 0.5145224105158226 0.0 0.0 0.0 0.0 22 0.5709898519587143 0.0 0.0 0.0 0.0 23 0.6291909429195897 0.0 0.0 0.0 0.0 24 0.6898686760490127 0.0 0.0 0.0 0.0 25 0.7375440377935595 0.0 0.0 0.0 0.0 26 0.7910395086341938 0.0 0.0 0.0 0.0 27 0.8356190676680556 0.0 0.0 0.0 0.0 28 0.8834182615210298 0.0 0.0 0.0 0.0 29 0.9231683683262233 0.0 0.0 0.0 0.0 30 0.9569745339269019 0.0 0.0 0.0 0.0 31 0.9859512472989121 0.0 0.0 0.0 0.0 32 1.0165377780804785 0.0 0.0 0.0 0.0 33 1.038084564946845 0.0 0.0 0.0 0.0 34 1.062850986632324 0.0 0.0 0.0 0.0 35 1.101858100786953 0.0 0.0 0.0 0.0 36 1.126005361930295 0.0 0.0 0.0 0.0 37 1.152753097350612 0.0 0.0 0.0 0.0 38 1.177519519036091 0.0 0.0 0.0 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ATTTACG 30 2.5267782E-6 44.0 20 CTATGCG 20 7.8550895E-4 44.0 27 TCGTTTA 25 4.4416593E-5 44.0 32 CTCGTCT 30 2.5267782E-6 44.0 37 CTACTAT 30 2.5267782E-6 44.0 39 CGTATAA 20 7.8550895E-4 44.0 35 AGTCACG 30 2.5267782E-6 44.0 38 TTTACGA 20 7.8550895E-4 44.0 25 CGAAACG 25 4.4416593E-5 44.0 39 TCCGATA 30 2.5267782E-6 44.0 20 ACGTTAC 25 4.4416593E-5 44.0 33 CCGATAC 20 7.8550895E-4 44.0 21 CAACCGT 20 7.8550895E-4 44.0 12 ATTCGAG 35 1.445369E-7 44.0 17 TACGGGT 20 7.8550895E-4 44.0 23 TAACGGC 35 1.445369E-7 44.0 32 TTATCGG 35 1.445369E-7 44.0 21 GCCATAC 30 2.5267782E-6 44.0 25 CTAACGG 20 7.8550895E-4 44.0 12 TACGCGG 20 7.8550895E-4 44.0 43 >>END_MODULE