##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1527819_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 2175778 Sequences flagged as poor quality 0 Sequence length 50 %GC 51 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.161846015540185 33.0 31.0 34.0 31.0 34.0 2 32.59978545605296 34.0 31.0 34.0 31.0 34.0 3 32.63481292668646 34.0 31.0 34.0 31.0 34.0 4 36.27636826918923 37.0 37.0 37.0 35.0 37.0 5 35.09485894241048 35.0 35.0 37.0 33.0 37.0 6 36.03344734619065 37.0 35.0 37.0 35.0 37.0 7 36.539747161704916 37.0 37.0 37.0 35.0 37.0 8 36.62941118073627 37.0 37.0 37.0 35.0 37.0 9 38.52559130573064 39.0 39.0 39.0 37.0 39.0 10 37.89021766007377 39.0 38.0 39.0 35.0 39.0 11 37.2539243433843 39.0 37.0 39.0 35.0 39.0 12 37.16331399618895 39.0 37.0 39.0 34.0 39.0 13 37.01433418299109 39.0 37.0 39.0 33.0 39.0 14 37.882373569362315 40.0 37.0 40.0 33.0 40.0 15 38.00484470382548 40.0 38.0 40.0 34.0 40.0 16 37.913724653893915 40.0 37.0 40.0 34.0 40.0 17 37.801041742310105 40.0 37.0 40.0 34.0 40.0 18 37.816070389534225 40.0 37.0 40.0 34.0 40.0 19 37.69375735943649 40.0 37.0 40.0 33.0 40.0 20 37.78398301664968 40.0 37.0 40.0 33.0 40.0 21 37.76666001770401 40.0 37.0 40.0 33.0 40.0 22 37.61621406228025 40.0 37.0 40.0 33.0 40.0 23 37.4270536791897 39.0 36.0 40.0 33.0 40.0 24 37.18889059453676 39.0 36.0 40.0 33.0 40.0 25 36.85547836222262 39.0 35.0 40.0 33.0 40.0 26 36.65029106829833 38.0 35.0 40.0 32.0 40.0 27 36.566109226217016 39.0 35.0 40.0 32.0 40.0 28 36.38767374244983 38.0 35.0 40.0 31.0 40.0 29 36.29390176755165 39.0 35.0 40.0 31.0 40.0 30 36.20984953428153 39.0 35.0 40.0 31.0 40.0 31 36.05594688428691 39.0 35.0 40.0 30.0 40.0 32 35.75724683308683 38.0 35.0 40.0 30.0 40.0 33 35.54267530970531 38.0 35.0 40.0 28.0 40.0 34 34.955308859635494 38.0 35.0 40.0 24.0 40.0 35 34.79293475713055 38.0 35.0 40.0 23.0 40.0 36 34.455745485063275 38.0 34.0 40.0 21.0 40.0 37 33.98709289274917 38.0 34.0 40.0 17.0 40.0 38 33.69294661495796 38.0 34.0 40.0 15.0 40.0 39 33.32648689342387 37.0 33.0 40.0 12.0 40.0 40 32.85954771120951 36.0 33.0 40.0 10.0 40.0 41 32.62830812702399 35.0 33.0 40.0 10.0 40.0 42 32.417224551401844 35.0 33.0 40.0 10.0 40.0 43 32.19439988822389 35.0 32.0 40.0 10.0 40.0 44 31.912247021525175 35.0 31.0 40.0 10.0 40.0 45 31.77939201517802 35.0 31.0 40.0 9.0 40.0 46 31.547393621959593 35.0 31.0 40.0 9.0 40.0 47 31.40935885922185 35.0 31.0 40.0 9.0 40.0 48 31.20241862910646 35.0 30.0 39.0 9.0 40.0 49 30.971523289600317 35.0 29.0 39.0 9.0 40.0 50 30.201060494223217 35.0 27.0 38.0 8.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 0.0 11 1.0 12 5.0 13 12.0 14 15.0 15 52.0 16 130.0 17 307.0 18 649.0 19 1399.0 20 2689.0 21 4848.0 22 8306.0 23 14145.0 24 22352.0 25 31503.0 26 41717.0 27 55851.0 28 69936.0 29 71984.0 30 62760.0 31 58279.0 32 67101.0 33 88594.0 34 166430.0 35 158744.0 36 197297.0 37 317741.0 38 491213.0 39 241717.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 100.0 0.0 0.0 0.0 2 0.0 0.0 0.0 100.0 3 0.0 0.0 100.0 0.0 4 100.0 0.0 0.0 0.0 5 0.0 0.0 100.0 0.0 6 100.0 0.0 0.0 0.0 7 98.964784091024 0.6309467234249082 0.29120618004226534 0.1130630055088341 8 98.27252596542479 0.9705034245221709 0.44926458489790777 0.3077060251551399 9 92.19276966675828 4.358211177794794 1.96072393415137 1.4882952212955551 10 42.32706645622853 43.77831745701997 6.544969201821142 7.349646884930356 11 25.81044573481302 37.146988341641475 19.512146919400784 17.530419004144722 12 30.956145342033974 27.403944703917404 25.52912107760994 16.11078887643868 13 26.417355079424464 26.529039267792946 23.826879396703156 23.226726256079434 14 22.86616557387748 30.944930962625783 22.04333346508697 24.145569998409762 15 25.0792130447132 29.239793765724258 25.05673832532547 20.624254864237066 16 29.221087813186823 31.63489105965774 22.777185907753456 16.366835219401977 17 30.33756201230089 28.99381278788553 24.49059600749709 16.178029192316494 18 33.10296362956147 28.26331546692723 21.5105585220551 17.123162381456197 19 30.701615697925067 28.961088861087852 22.35793357594387 17.979361865043217 20 29.78061180874152 31.769417651984718 18.830735488639007 19.61923505063476 21 28.597724584033852 29.004429679866234 24.871563183376246 17.526282552723668 22 27.015945560622452 31.211364394713065 19.774214097210287 21.9984759474542 23 23.099783158024394 35.00311153068006 21.533998413441076 20.36310689785447 24 24.657157118051565 34.4451501945511 23.116007239709198 17.781685447688137 25 26.352918358398696 32.1455130073013 20.2708180705936 21.23075056370641 26 26.879948230012435 32.41755362909267 22.767442266628304 17.935055874266585 27 27.379493679961836 31.018008271064417 19.590831417543516 22.01166663143023 28 27.730770326752086 35.508356091476244 18.328708167836975 18.432165413934694 29 31.225014684402545 32.561272335688656 18.212703685762058 18.001009294146737 30 26.023289140711963 36.12156203436196 18.7777889104495 19.07735991447657 31 27.81322359174511 35.68291434144476 18.613709670747657 17.89015239606247 32 25.311957378004557 36.308253875165576 20.843119104982218 17.536669641847652 33 27.28417145499219 36.789047412006184 18.88823216339167 17.038548969609952 34 23.537097994372587 36.895262292384615 20.44303233142352 19.124607381819285 35 22.808347175125405 39.867670322983315 20.485821623345764 16.838160878545512 36 25.695774109307106 37.13237287995375 19.32678793516618 17.845065075572965 37 25.133998045756506 36.08654007899703 20.698251384102605 18.081210491143857 38 27.610399590399386 35.45945404356511 19.27324386954919 17.656902496486314 39 26.70401116290357 33.33253668343002 19.096755275584183 20.86669687808223 40 26.247898452875244 32.89434859622627 20.591117292297284 20.2666356586012 41 26.869515180317112 32.991003677764915 19.9320426992092 20.20743844270877 42 24.66690075917672 32.509566692925475 19.735561256709094 23.087971291188715 43 24.1833495880554 32.36934098975171 22.223085259617477 21.224224162575407 44 26.29339941850685 32.170975163826455 20.063122248685296 21.472503168981394 45 24.714883595660954 32.404179102831264 21.764904323878632 21.11603297762915 46 26.653408573852666 32.83119877119817 20.357223944722303 20.15816871022687 47 25.730428380101277 32.94862803098478 20.812187640467 20.508755948446947 48 26.473381015894088 31.649736324202195 20.943221229371748 20.933661430531973 49 26.297995475641358 31.48827683706702 21.442674758178455 20.771052929113175 50 24.111467254471734 32.114259818786664 22.299517689764308 21.474755236977302 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 48.0 8 96.0 9 166.0 10 236.0 11 1759.5 12 3283.0 13 10525.0 14 17767.0 15 12961.5 16 8156.0 17 8311.0 18 8466.0 19 8665.5 20 8865.0 21 9952.0 22 11039.0 23 13607.5 24 16176.0 25 18476.5 26 20777.0 27 25952.0 28 31127.0 29 37512.5 30 43898.0 31 53621.0 32 63344.0 33 62844.0 34 62344.0 35 61448.5 36 60553.0 37 66587.5 38 72622.0 39 83781.0 40 94940.0 41 100540.0 42 106140.0 43 92445.0 44 78750.0 45 75107.0 46 71464.0 47 75802.5 48 80141.0 49 86669.0 50 93197.0 51 90850.5 52 88504.0 53 94440.0 54 100376.0 55 103591.0 56 106806.0 57 112725.5 58 118645.0 59 135280.0 60 151915.0 61 146725.0 62 141535.0 63 136370.5 64 131206.0 65 129119.5 66 127033.0 67 110478.5 68 93924.0 69 77819.5 70 61715.0 71 47848.5 72 33982.0 73 30227.0 74 26472.0 75 21291.5 76 16111.0 77 15421.0 78 14731.0 79 10259.5 80 5788.0 81 4156.0 82 2524.0 83 1621.5 84 719.0 85 511.5 86 304.0 87 182.5 88 61.0 89 40.5 90 20.0 91 16.5 92 13.0 93 8.5 94 4.0 95 6.5 96 9.0 97 4.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 2175778.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 20.805497673858845 #Duplication Level Percentage of deduplicated Percentage of total 1 75.5857766761996 15.725997008134849 2 9.780277280317055 4.0696707241066195 3 3.6493388482819875 2.2777893275716083 4 1.7903565534263284 1.4899703643075763 5 1.0335133079622272 1.075137936235514 6 0.6910481311855723 0.8626560171543556 7 0.5217882300799027 0.7599244665022037 8 0.4035748091234583 0.671725980195691 9 0.32781971649196906 0.6138407114026856 >10 4.3029025444015545 23.11811990981498 >50 1.3241185672531424 18.80646408162526 >100 0.5552207971814936 19.138913339270967 >500 0.02051363793885583 2.97899229529795 >1k 0.012172928007672692 4.6668080884066825 >5k 6.762737782040384E-4 1.0452760880599747 >10k+ 9.01698370938718E-4 2.6987136619131786 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GCTGTGGGGGAGTGCAGTGCTGCTGTGGGGAAAAAAAAAAAAAAAAAAAA 20232 0.9298742794531427 No Hit GCTGTGGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 13590 0.6246041645792907 No Hit GCTGTGGGGAAGCAGTGGTATCAACGCAGAGTGCAGTGCTGCTGTGGGGA 13055 0.6000152589096865 No Hit GCTGTGGGGAGTGCAGTGCTGCTGTGGGGAAAAAAAAAAAAAAAAAAAAA 10664 0.4901235328236613 No Hit GCTGTGGGGGCTGCTGTGGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 8442 0.3879991432949501 No Hit GCTGTGGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTG 7823 0.3595495496323614 No Hit GCTGTGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGC 6022 0.27677456063991823 No Hit GCTGTGGGGAGAGTGCAGTGCTGCTGTGGGGAAAAAAAAAAAAAAAAAAA 4215 0.19372380821940474 No Hit GCTGTGGGGGAGTGCAGTGCTGCTGTGGGAAAAAAAAAAAAAAAAAAAAA 3986 0.18319883738138726 No Hit GCTGTGGGGATCGGAAGAGCTCGTATGCCGTCTTCTGCTTGAAAAAAAAA 3826 0.17584514596617853 Illumina Single End Adapter 2 (97% over 34bp) GCTGTGGGGGAATCCGCAGCGGCTTCTGAGCAGATCAGACTCTCCTCGTT 3493 0.1605402757082754 No Hit GCTGTGGGGAGATCGGAAGAGCTCGTATGCCGTCTTCTGCTTGAAAAAAA 3460 0.1590235768538886 Illumina Single End Adapter 2 (100% over 34bp) GCTGTGGGGGATCGGAAGAGCTCGTATGCCGTCTTCTGCTTGAAAAAAAA 3212 0.14762535516031505 Illumina Single End Adapter 2 (97% over 34bp) GCTGTGGGGGTGCTGCTGTGGGGAAAAAAAAAAAAAAAAAAAAAAAAAAA 2757 0.12671329519831526 No Hit GCTGTGGGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACT 2754 0.12657541348428009 No Hit GCTGTGGGGGAGTCCCGCCCGGGAGCCGGCAGGGAGCGGAGCTGTGGAGC 2716 0.12482891177316804 No Hit GCTGTGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 2553 0.11733733864392414 No Hit GCTGTGGGGGGTCTCTTGCTGCAGCAACGAGAGTGGGAGCACCTGGAGCG 2420 0.1112245826550319 No Hit GCTGTGGGGGAGTGCAGTGCTGCTGTGGGGTAAAAAAAAAAAAAAAAAAA 2407 0.1106270952275462 No Hit GCTGTGGGATCGGAAGAGCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAA 2384 0.10957000208660994 Illumina Single End Adapter 2 (97% over 34bp) GCTGTGGGGGGGCTGGTGAGATGGCTCAGCGGGTAAGAGCACCCGACTGC 2347 0.10786946094684291 No Hit GCTGTGGGGAAGCAGTGGTATCAACGCAGAGTGCAGTGCTGCTGTGGGGG 2274 0.10451433923865394 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.08300479184916844 0.0 0.0 0.0 0.0 8 0.10561739295093525 0.0 0.0 0.0 0.0 9 0.19399957164747506 0.0 0.0 0.0 0.0 10 0.4139668661049059 0.0 0.0 0.0 0.0 11 0.5316718893195905 0.0 0.0 0.0 0.0 12 0.6236849531523896 0.0 0.0 0.0 0.0 13 0.6832958141869253 0.0 0.0 0.0 0.0 14 0.7822029637214826 0.0 0.0 0.0 0.0 15 0.8738483429835213 0.0 0.0 0.0 0.0 16 0.9765702199397182 0.0 0.0 0.0 0.0 17 1.065090280350293 0.0 0.0 0.0 0.0 18 1.1491062047690528 0.0 0.0 0.0 0.0 19 1.2508629097270034 0.0 0.0 0.0 0.0 20 1.3630526643802814 0.0 0.0 0.0 0.0 21 1.4851239418727462 0.0 0.0 0.0 0.0 22 1.6294860964675624 0.0 0.0 0.0 0.0 23 1.775778595058871 0.0 0.0 0.0 0.0 24 1.9291490216373177 0.0 0.0 0.0 0.0 25 2.059998768256688 0.0 0.0 0.0 0.0 26 2.20932466455677 0.0 0.0 0.0 0.0 27 2.3250993437749625 0.0 0.0 0.0 0.0 28 2.510136604010152 0.0 0.0 0.0 0.0 29 2.605045183837689 0.0 0.0 0.0 0.0 30 2.7383768013096925 0.0 0.0 0.0 0.0 31 2.846889710255366 0.0 0.0 0.0 0.0 32 2.9604582820489957 0.0 0.0 0.0 0.0 33 3.0638695675753684 0.0 0.0 0.0 0.0 34 3.163649967965482 0.0 0.0 0.0 0.0 35 3.329016103664988 0.0 0.0 0.0 0.0 36 3.4189609417872595 0.0 0.0 0.0 0.0 37 3.5142831667569028 0.0 0.0 0.0 0.0 38 3.604090123165139 0.0 0.0 0.0 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TACGGTA 20 7.858032E-4 44.000004 38 ATACTCG 40 8.3182385E-9 44.000004 44 TACGTTC 20 7.858032E-4 44.000004 14 TACCGTA 20 7.858032E-4 44.000004 19 CGACGTA 30 2.5287627E-6 44.0 28 CGCGATT 25 4.444155E-5 44.0 13 TACGCTT 35 1.4468787E-7 44.0 23 CATACGC 35 1.4468787E-7 44.0 20 ATAACCG 25 4.444155E-5 44.0 29 TAATCGA 25 4.444155E-5 44.0 42 TGGGGAT 19520 0.0 39.345287 5 AAGCAGT 8465 0.0 38.880096 10 TGGGGGT 17040 0.0 38.758217 5 TGGGGAC 9180 0.0 38.607845 5 GTGGGGG 97795 0.0 38.510967 4 CGTCTAT 40 4.1267958E-7 38.500004 34 TGGGGGG 25520 0.0 38.474136 5 TGGGGAG 26380 0.0 37.80364 5 ACGTACG 35 7.293207E-6 37.714287 30 TATCCGA 35 7.293207E-6 37.714287 11 >>END_MODULE