##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1527818_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 3190379 Sequences flagged as poor quality 0 Sequence length 52 %GC 51 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.84992441336907 31.0 31.0 34.0 30.0 34.0 2 32.334426097965164 34.0 31.0 34.0 31.0 34.0 3 32.31221400341464 34.0 31.0 34.0 30.0 34.0 4 36.15111997665481 37.0 35.0 37.0 35.0 37.0 5 34.84622892766032 35.0 35.0 37.0 33.0 37.0 6 35.827533656659604 37.0 35.0 37.0 35.0 37.0 7 36.495709443925 37.0 37.0 37.0 35.0 37.0 8 36.57408508518894 37.0 37.0 37.0 35.0 37.0 9 38.448447034035766 39.0 39.0 39.0 37.0 39.0 10 37.58028152768057 39.0 37.0 39.0 35.0 39.0 11 36.894365528358854 39.0 35.0 39.0 33.0 39.0 12 36.802951937685144 39.0 35.0 39.0 33.0 39.0 13 36.64311951652139 39.0 35.0 39.0 33.0 39.0 14 37.55866654087179 40.0 36.0 40.0 33.0 40.0 15 37.700762824730226 40.0 37.0 40.0 33.0 40.0 16 37.61323184486859 40.0 36.0 40.0 33.0 40.0 17 37.54056712384328 40.0 36.0 40.0 33.0 40.0 18 37.59972310499787 40.0 36.0 40.0 33.0 40.0 19 37.439589152260595 40.0 36.0 40.0 33.0 40.0 20 37.616990019054164 40.0 37.0 40.0 33.0 40.0 21 37.59153160173133 40.0 36.0 40.0 33.0 40.0 22 37.46813027543123 40.0 36.0 40.0 33.0 40.0 23 37.28583469236727 39.0 36.0 40.0 33.0 40.0 24 37.012846122670695 39.0 35.0 40.0 33.0 40.0 25 36.66838642054753 38.0 35.0 40.0 32.0 40.0 26 36.36917244001418 38.0 35.0 40.0 31.0 40.0 27 36.31063111937485 38.0 35.0 40.0 31.0 40.0 28 36.186139013578014 38.0 35.0 40.0 31.0 40.0 29 36.00840777851158 38.0 35.0 40.0 30.0 40.0 30 35.647436871920235 38.0 35.0 40.0 30.0 40.0 31 35.38127633111928 38.0 35.0 40.0 28.0 40.0 32 34.911694817449586 37.0 34.0 40.0 26.0 40.0 33 34.75546917779988 37.0 34.0 40.0 25.0 40.0 34 34.319165842051994 37.0 33.0 40.0 22.0 40.0 35 34.0898507669465 37.0 33.0 40.0 21.0 40.0 36 33.810626261017894 37.0 33.0 40.0 20.0 40.0 37 33.2975235857558 37.0 33.0 40.0 15.0 40.0 38 33.04363243363876 36.0 33.0 40.0 15.0 40.0 39 32.668768820256155 36.0 32.0 40.0 11.0 40.0 40 32.2012055620978 35.0 31.0 40.0 10.0 40.0 41 31.952006642471005 35.0 31.0 39.0 10.0 40.0 42 31.71672895289243 35.0 31.0 39.0 10.0 40.0 43 31.491851281618892 35.0 30.0 39.0 10.0 40.0 44 31.358589998241587 35.0 30.0 39.0 10.0 40.0 45 31.151209934619054 35.0 30.0 39.0 9.0 40.0 46 30.93305748313915 35.0 29.0 39.0 9.0 40.0 47 30.74547318672797 35.0 28.0 38.0 9.0 40.0 48 30.516313265602612 35.0 28.0 38.0 9.0 40.0 49 30.569635143661614 35.0 28.0 39.0 9.0 40.0 50 30.311868589907345 35.0 27.0 39.0 8.0 40.0 51 30.217393920910336 35.0 27.0 38.0 8.0 40.0 52 29.692648114847795 35.0 25.0 38.0 8.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 7.0 13 14.0 14 27.0 15 57.0 16 215.0 17 568.0 18 1400.0 19 3272.0 20 6514.0 21 11692.0 22 19930.0 23 32253.0 24 45642.0 25 61613.0 26 81858.0 27 101486.0 28 105094.0 29 96270.0 30 88620.0 31 95527.0 32 118654.0 33 160017.0 34 270334.0 35 245758.0 36 319079.0 37 458001.0 38 642082.0 39 224394.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 100.0 0.0 0.0 0.0 2 0.0 0.0 0.0 100.0 3 0.0 0.0 100.0 0.0 4 100.0 0.0 0.0 0.0 5 0.0 0.0 100.0 0.0 6 100.0 0.0 0.0 0.0 7 99.0190507146643 0.6096140928710978 0.2676171075599482 0.10371808490464614 8 98.29653467503391 0.954463403877721 0.4430194657123809 0.3059824553759914 9 92.29991170328039 4.278770641356403 1.9541565437836694 1.4671611115795333 10 42.333810497122755 43.84670285254511 6.489511120779068 7.329975529553072 11 25.95776238497056 36.874678525654794 19.592186382871756 17.575372706502897 12 31.263307588220712 26.753498565530933 25.578998608002372 16.40419523824599 13 26.331009575978275 25.943814198877313 23.8208689312461 23.90430729389831 14 22.78961214325947 30.772174716546214 22.22109034694624 24.217122793248073 15 25.594702071446683 28.55137273659337 25.151964703880008 20.701960488079944 16 29.22890979410283 30.821761301713686 23.354059188579164 16.59526971560432 17 30.715849120120208 28.335536310889708 24.490287831006913 16.458326737983167 18 33.50272804579017 27.56741440437014 21.577279689967867 17.352577859871822 19 30.548188788855494 28.40170399817702 22.88242243319681 18.167684779770678 20 29.694089636372357 31.62260659313517 18.976804950132884 19.706498820359588 21 28.623401796463682 28.526892886393746 25.212803870637313 17.63690144650526 22 26.97795465679783 30.603762123559612 19.93380723732196 22.484475982320596 23 23.19555137493069 34.79621073232992 21.601602818975426 20.40663507376396 24 24.71490064346587 34.16484373800103 23.049330502739643 18.07092511579345 25 26.319725650150026 31.441029420015614 20.25295427283091 21.986290657003448 26 27.22353676475428 31.733032345059943 22.846658657168945 18.19677223301683 27 27.27472190608075 30.2573456006324 19.738783385923742 22.729149107363106 28 27.55086464648871 35.24289747393648 18.50661002971747 18.699627849857336 29 31.41570327537888 31.926865115398517 18.403800927726767 18.253630681495835 30 26.017880634244396 35.751457742167936 18.92605862814418 19.30460299544349 31 28.34531571327419 34.81962487842353 18.72125537436148 18.113804033940795 32 25.768599906155348 35.468137171163676 21.05505333378887 17.708209588892103 33 27.947337918159565 35.894356125087334 18.92433469503153 17.23397126172157 34 23.633210975874654 36.079193099001714 20.635134571785983 19.652461353337642 35 22.866875690944553 39.49267469476197 20.65159029695218 16.988859317341294 36 26.12159871914904 36.505600118355844 19.36961094590956 18.00319021658555 37 25.23051336533998 35.5383169209677 20.987067680673675 18.244102033018645 38 27.806476910736937 34.993804811277904 19.349707354518067 17.850010923467085 39 26.62972016804273 32.869919216494345 19.17054368775622 21.32981692770671 40 26.21453438604003 32.43993895396127 20.835549632191032 20.50997702780767 41 27.034499662892713 32.44683468641186 20.095104688189082 20.423560962506336 42 24.736810266115718 31.891477470231592 19.820121684602363 23.551590579050327 43 24.27131698146208 31.76190038863721 22.5179516289444 21.44883100095631 44 26.618686996121777 31.41730183153788 20.22596688355835 21.738044288781992 45 24.962802225064795 31.625584295784293 22.07546501528502 21.336148463865893 46 26.990931171500314 32.213132044813484 20.421492242771155 20.374444540915047 47 26.271894342333624 32.254945258854825 20.86817898437772 20.604981414433833 48 27.077002450179116 30.964032799864842 20.935192966102147 21.023771783853892 49 26.71030620499947 30.8568668487349 21.567813729967504 20.865013216298127 50 23.96624350900003 31.864552769435857 22.318257486022823 21.850946235541294 51 22.840797284585936 31.53898016505249 23.181227057976496 22.438995492385075 52 25.423562529718257 30.058936571485706 22.578351976363937 21.9391489224321 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 58.0 8 116.0 9 222.0 10 328.0 11 2270.0 12 4212.0 13 14134.5 14 17343.5 15 10630.0 16 11004.5 17 11379.0 18 11320.5 19 11262.0 20 11916.0 21 12570.0 22 14936.5 23 17303.0 24 18646.0 25 19989.0 26 25762.5 27 31536.0 28 40724.0 29 49912.0 30 59487.5 31 69063.0 32 73198.0 33 77333.0 34 81419.5 35 85506.0 36 94714.5 37 103923.0 38 118790.5 39 140205.0 40 146752.0 41 127428.5 42 108105.0 43 105210.5 44 102316.0 45 106761.5 46 111207.0 47 120128.5 48 129050.0 49 122171.0 50 115292.0 51 121861.5 52 128431.0 53 136481.0 54 144531.0 55 149583.5 56 154636.0 57 162106.0 58 169576.0 59 187645.5 60 205715.0 61 209114.5 62 212514.0 63 200563.0 64 186591.0 65 184570.0 66 167740.5 67 150911.0 68 125198.0 69 99485.0 70 80638.5 71 61792.0 72 51361.5 73 40931.0 74 34601.0 75 28271.0 76 27116.5 77 25962.0 78 18966.5 79 11971.0 80 8245.5 81 4520.0 82 2999.5 83 1479.0 84 1092.0 85 705.0 86 456.5 87 208.0 88 119.5 89 24.0 90 17.0 91 10.5 92 4.0 93 4.5 94 5.0 95 4.0 96 3.0 97 1.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 52 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 52 3190379.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 21.45430080382738 #Duplication Level Percentage of deduplicated Percentage of total 1 78.61791310377347 16.866923562975185 2 8.799065576792536 3.7755559935421985 3 3.4854431110118362 2.2433323481482756 4 1.787113464369929 1.5336507934065 5 0.9967468837282077 1.0692253734391262 6 0.6489046993029174 0.8353077967117168 7 0.440027938179665 0.6608344223456144 8 0.32058003910509847 0.5502256472530821 9 0.25110762717273866 0.4848604710749347 >10 2.601103657650433 13.561362348882215 >50 1.2710491631769547 19.434071278457548 >100 0.7462760663624443 27.454706900310683 >500 0.020713060939367783 3.0269500396165885 >1k 0.012486597020186252 4.793172535479413 >5k 7.345057070697796E-4 0.9583571609035663 >10k+ 7.345057070697796E-4 2.751463327453405 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GCTGTGGGGGAGTGCAGTGCTGCTGTGGGGAAAAAAAAAAAAAAAAAAAAAA 26580 0.8331298569856433 No Hit GCTGTGGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 18206 0.5706532045252304 No Hit GCTGTGGGGAAGCAGTGGTATCAACGCAGAGTGCAGTGCTGCTGTGGGGAAG 17390 0.5450763059812016 No Hit GCTGTGGGGAGTGCAGTGCTGCTGTGGGGAAAAAAAAAAAAAAAAAAAAAAA 13326 0.4176933210756465 No Hit GCTGTGGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCT 11800 0.36986201325923973 No Hit GCTGTGGGGGCTGCTGTGGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 7785 0.24401489603586282 No Hit GCTGTGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTC 6697 0.20991236464382446 No Hit GCTGTGGGGGAATCCGCAGCGGCTTCTGAGCAGATCAGACTCTCCTCGTTCG 5398 0.16919619894689628 No Hit GCTGTGGGGAGAGTGCAGTGCTGCTGTGGGGAAAAAAAAAAAAAAAAAAAAA 5279 0.16546623457589207 No Hit GCTGTGGGGGAGTGCAGTGCTGCTGTGGGAAAAAAAAAAAAAAAAAAAAAAA 5249 0.1645259074235381 No Hit GCTGTGGGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGC 4260 0.1335264556342679 No Hit GCTGTGGGGGAGTCCCGCCCGGGAGCCGGCAGGGAGCGGAGCTGTGGAGCCT 4194 0.1314577358990891 No Hit GCTGTGGGGAGATCGGAAGAGCTCGTATGCCGTCTTCTGCTTGAAAAAAAAA 3881 0.12164698927619572 Illumina Single End Adapter 2 (100% over 34bp) GCTGTGGGGGGTCTCTTGCTGCAGCAACGAGAGTGGGAGCACCTGGAGCGCG 3759 0.11782299218995611 No Hit GCTGTGGGGGGGCTGGTGAGATGGCTCAGCGGGTAAGAGCACCCGACTGCTC 3583 0.11230640622947932 No Hit GCTGTGGGGATCGGAAGAGCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAAA 3425 0.10735401656041493 Illumina Single End Adapter 2 (97% over 34bp) GCTGTGGGGGATCGGAAGAGCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAA 3332 0.10443900238811753 Illumina Single End Adapter 2 (97% over 34bp) GCTGTGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 3291 0.10315388861323373 No Hit GCTGTGGGGAAGCAGTGGTATCAACGCAGAGTGCAGTGCTGCTGTGGGGGAG 3202 0.10036425139458352 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.07171561748619835 0.0 0.0 0.0 0.0 8 0.09353120742081113 0.0 0.0 0.0 0.0 9 0.17740838941078788 0.0 0.0 0.0 0.0 10 0.3790145308754853 0.0 0.0 0.0 0.0 11 0.49097615048243487 0.0 0.0 0.0 0.0 12 0.574163759227352 0.0 0.0 0.0 0.0 13 0.631210273136828 0.0 0.0 0.0 0.0 14 0.7211368931402821 0.0 0.0 0.0 0.0 15 0.8033528304944334 0.0 0.0 0.0 0.0 16 0.8955989241403608 0.0 0.0 0.0 0.0 17 0.9748685030838029 0.0 0.0 0.0 0.0 18 1.0491856923581806 0.0 0.0 0.0 0.0 19 1.1427482440174035 0.0 0.0 0.0 0.0 20 1.2370003689216862 0.0 0.0 0.0 0.0 21 1.340436355680626 0.0 0.0 0.0 0.0 22 1.4608922638971733 0.0 0.0 0.0 0.0 23 1.581943712643545 0.0 0.0 0.0 0.0 24 1.7078221741053337 0.0 0.0 0.0 0.0 25 1.8156776984803373 0.0 0.0 0.0 0.0 26 1.9400202922599479 0.0 0.0 0.0 0.0 27 2.028317011865988 0.0 0.0 0.0 0.0 28 2.177734996375039 0.0 0.0 0.0 3.1344238411799976E-5 29 2.2451877974372323 0.0 0.0 0.0 3.1344238411799976E-5 30 2.3521970273751176 0.0 0.0 0.0 3.1344238411799976E-5 31 2.4393340101599215 0.0 0.0 0.0 3.1344238411799976E-5 32 2.5342757083092637 0.0 0.0 0.0 3.1344238411799976E-5 33 2.6198141349350657 0.0 0.0 0.0 3.1344238411799976E-5 34 2.7081108545411063 0.0 0.0 0.0 3.1344238411799976E-5 35 2.857152708189215 0.0 0.0 0.0 3.1344238411799976E-5 36 2.935231206073009 0.0 0.0 0.0 3.1344238411799976E-5 37 3.0174157991887482 0.0 0.0 0.0 3.1344238411799976E-5 38 3.0937390197214816 0.0 0.0 0.0 3.1344238411799976E-5 39 3.1678994878038003 0.0 0.0 0.0 3.1344238411799976E-5 40 3.2469183128399477 0.0 0.0 0.0 3.1344238411799976E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TAATACG 30 1.8624505E-6 46.0 46 ATTCGCG 25 3.4185297E-5 46.0 10 TAACGAA 25 3.4185297E-5 46.0 14 GTCCGAT 20 6.313149E-4 46.0 44 TACGTTC 70 0.0 42.714287 14 TGGGGAT 29085 0.0 41.53206 5 AAGCAGT 13745 0.0 40.896328 10 CGCATAC 45 1.5899786E-8 40.88889 38 CACGACG 135 0.0 40.88889 34 TATCTCG 40 2.9127477E-7 40.25 35 GTGGGGG 144305 0.0 39.997578 4 TGGGGAC 14170 0.0 39.89697 5 TGGGGGG 38735 0.0 39.818768 5 GGAAGCA 14795 0.0 39.812775 8 TGGGGGT 24550 0.0 39.797966 5 ACGCGTA 35 5.3761123E-6 39.428574 23 GAAGCAG 14525 0.0 39.333565 9 TGGGGAG 38910 0.0 38.995377 5 CGTGTAT 95 0.0 38.736843 26 TGGGGGC 41855 0.0 38.510094 5 >>END_MODULE