SRR1527817_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1527817_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3224759
Sequences flagged as poor quality	0
Sequence length	52
%GC	51

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTGGGGGAGTGCAGTGCTGCTGTGGGGAAAAAAAAAAAAAAAAAAAAAA	25593	0.7936407030726946	No Hit
GCTGTGGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	16967	0.5261478454669016	No Hit
GCTGTGGGGAAGCAGTGGTATCAACGCAGAGTGCAGTGCTGCTGTGGGGAAG	15894	0.4928740411298953	No Hit
GCTGTGGGGAGTGCAGTGCTGCTGTGGGGAAAAAAAAAAAAAAAAAAAAAAA	12988	0.4027587798033899	No Hit
GCTGTGGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCT	11265	0.34932843043464645	No Hit
GCTGTGGGGGCTGCTGTGGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	7431	0.2304358248166762	No Hit
GCTGTGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTC	6297	0.1952704062536146	No Hit
GCTGTGGGGAGAGTGCAGTGCTGCTGTGGGGAAAAAAAAAAAAAAAAAAAAA	5180	0.16063215886830612	No Hit
GCTGTGGGGGAGTGCAGTGCTGCTGTGGGAAAAAAAAAAAAAAAAAAAAAAA	5130	0.15908165540432634	No Hit
GCTGTGGGGGAATCCGCAGCGGCTTCTGAGCAGATCAGACTCTCCTCGTTCG	5094	0.15796529291026087	No Hit
GCTGTGGGGAAGCAGTGGTATCAACGCAGAGTGCAGTGCTGCTGTGGGGGAG	4589	0.14230520792406504	No Hit
GCTGTGGGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGC	4170	0.1293119888959144	No Hit
GCTGTGGGGGAGTCCCGCCCGGGAGCCGGCAGGGAGCGGAGCTGTGGAGCCT	4071	0.1262419920372344	No Hit
GCTGTGGGGAGATCGGAAGAGCTCGTATGCCGTCTTCTGCTTGAAAAAAAAA	3799	0.11780725319318437	Illumina Single End Adapter 2 (100% over 34bp)
GCTGTGGGGGGTCTCTTGCTGCAGCAACGAGAGTGGGAGCACCTGGAGCGCG	3596	0.11151220912942642	No Hit
GCTGTGGGGGGGCTGGTGAGATGGCTCAGCGGGTAAGAGCACCCGACTGCTC	3436	0.1065505980446911	No Hit
GCTGTGGGGATCGGAAGAGCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAAA	3261	0.10112383592076184	Illumina Single End Adapter 2 (97% over 34bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TACGTCG	30	1.8624578E-6	46.0	14
ACGCGTT	25	3.4185392E-5	46.0	20
ACGCGTA	30	1.8624578E-6	46.0	23
GTAATAC	230	0.0	42.0	10
TGGGGAT	28940	0.0	41.342777	5
CACGACG	145	0.0	41.24138	34
AAGCAGT	13785	0.0	41.077984	10
GGAAGCA	14455	0.0	40.908337	8
CGACGTA	45	1.5899786E-8	40.888885	28
TATATCG	45	1.5899786E-8	40.888885	18
ACGTACG	45	1.5899786E-8	40.888885	30
GTGGGGG	146160	0.0	39.96518	4
TGGGGGT	25390	0.0	39.821976	5
TGGGGAC	13470	0.0	39.699333	5
GAAGCAG	14510	0.0	39.659542	9
TGGGGGG	38740	0.0	39.55834	5
ACGAATT	35	5.376134E-6	39.42857	42
TGGGGAG	39200	0.0	38.918114	5
AGCAGTG	14385	0.0	38.789017	11
TGGGGGC	42205	0.0	38.485012	5