##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1527804_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1369686 Sequences flagged as poor quality 0 Sequence length 50 %GC 57 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.30069592592755 31.0 31.0 31.0 31.0 33.0 2 31.34847841038019 31.0 31.0 31.0 30.0 34.0 3 32.288149984741025 31.0 31.0 34.0 31.0 34.0 4 36.29165370749208 37.0 35.0 37.0 35.0 37.0 5 36.35628311890463 37.0 37.0 37.0 35.0 37.0 6 33.331055438983825 35.0 32.0 35.0 31.0 35.0 7 35.38271253411366 35.0 35.0 37.0 35.0 37.0 8 36.36474929290363 37.0 35.0 37.0 35.0 37.0 9 38.67173133112261 39.0 39.0 39.0 38.0 39.0 10 37.8926534986851 39.0 37.0 39.0 35.0 39.0 11 37.338784947790955 39.0 37.0 39.0 35.0 39.0 12 36.42145791079123 37.0 35.0 39.0 33.0 39.0 13 36.225360411072316 37.0 35.0 39.0 33.0 39.0 14 36.744756097382904 38.0 35.0 40.0 33.0 40.0 15 36.69907701473184 38.0 35.0 40.0 32.0 40.0 16 36.64949119725251 38.0 35.0 40.0 32.0 40.0 17 36.25665517498171 38.0 35.0 40.0 30.0 40.0 18 36.14158427552008 38.0 34.0 40.0 30.0 40.0 19 36.016243869032756 38.0 34.0 40.0 30.0 40.0 20 35.81473564013942 38.0 34.0 40.0 30.0 40.0 21 35.88732234979404 38.0 34.0 40.0 30.0 40.0 22 36.04264846103413 38.0 34.0 40.0 30.0 40.0 23 36.04437513415483 38.0 34.0 40.0 30.0 40.0 24 36.12764385413883 38.0 34.0 40.0 31.0 40.0 25 36.04451166179694 38.0 34.0 39.0 31.0 40.0 26 35.807350005767745 38.0 34.0 39.0 30.0 40.0 27 35.651735507262245 38.0 34.0 39.0 30.0 40.0 28 35.364457985260856 37.0 34.0 39.0 30.0 40.0 29 35.94858091562592 38.0 34.0 40.0 30.0 40.0 30 36.26178335764548 38.0 34.0 40.0 31.0 40.0 31 36.43042419941505 38.0 35.0 40.0 31.0 40.0 32 36.47722397688229 38.0 35.0 40.0 31.0 40.0 33 36.372045125671136 38.0 35.0 40.0 31.0 40.0 34 35.718953103119986 38.0 34.0 40.0 28.0 40.0 35 35.80915625917181 38.0 34.0 40.0 29.0 40.0 36 35.9465570941077 38.0 34.0 40.0 30.0 40.0 37 35.9897918208991 38.0 34.0 40.0 30.0 40.0 38 35.94267007182668 38.0 34.0 40.0 30.0 40.0 39 35.83443869616832 38.0 34.0 40.0 30.0 40.0 40 35.695659443113236 38.0 34.0 40.0 30.0 40.0 41 35.561514828946194 38.0 34.0 40.0 30.0 40.0 42 35.47966468227024 37.0 34.0 40.0 29.0 40.0 43 35.430012426205714 37.0 34.0 40.0 29.0 40.0 44 35.14641238940896 37.0 34.0 40.0 29.0 40.0 45 35.08946795104863 37.0 34.0 40.0 28.0 40.0 46 34.84655242150391 36.0 33.0 40.0 28.0 40.0 47 34.732074358648624 36.0 33.0 40.0 27.0 40.0 48 34.622690164023 36.0 33.0 40.0 27.0 40.0 49 34.56644953660912 36.0 33.0 40.0 27.0 40.0 50 33.94546633315957 35.0 33.0 39.0 26.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 1.0 13 1.0 14 8.0 15 29.0 16 68.0 17 135.0 18 297.0 19 529.0 20 856.0 21 1316.0 22 2082.0 23 3121.0 24 4670.0 25 6724.0 26 9383.0 27 13115.0 28 18145.0 29 23558.0 30 31334.0 31 44670.0 32 67000.0 33 98025.0 34 138484.0 35 112752.0 36 175640.0 37 274065.0 38 331974.0 39 11704.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 100.0 0.0 0.0 0.0 2 0.0 0.0 100.0 0.0 3 0.0 0.0 0.0 100.0 4 100.0 0.0 0.0 0.0 5 100.0 0.0 0.0 0.0 6 0.0 0.0 100.0 0.0 7 99.19507098707295 0.6546025877463886 0.09651847211696696 0.05380795306369489 8 99.29085936484712 0.6175868045668861 0.04906233983555355 0.04249149075043477 9 98.18980408648406 1.046371212088026 0.3327039920098475 0.431120709418071 10 56.927646190440726 30.366521961967923 4.397212207761487 8.308619639829859 11 38.25519133582442 22.852463995397486 21.260493280941763 17.631851387836335 12 34.999262604713785 16.454793288388725 25.28491931727418 23.261024789623317 13 26.868420937353527 16.38309802392665 28.10768307480693 28.640797963912895 14 24.965211004566008 16.86444922412874 32.52614102794363 25.644198743361617 15 29.092361314929114 18.17986020153524 28.610572058121353 24.11720642541429 16 34.46315432880237 18.93068922366148 24.982587249924435 21.623569197611715 17 31.919213600781493 19.660564538149618 24.726251126170524 23.693970734898365 18 31.97740211990193 21.379936715422367 24.421071690883895 22.221589473791802 19 29.875387497572437 24.34039626600549 22.47427512583176 23.30994111059031 20 31.189557314596193 24.150790765182677 22.305696342081323 22.353955578139807 21 30.750624595710256 24.621701616282856 23.859848169580474 20.767825618426414 22 27.91836961172123 21.642113593918605 28.22749155645893 22.21202523790124 23 29.99242162072183 20.728181495612862 26.745692078330364 22.533704805334946 24 32.4850367164445 20.53974414573851 24.150352708577003 22.824866429239986 25 29.310075447949384 20.346853220373138 22.742730815676 27.600340516001477 26 25.02412961802924 20.95765014755207 26.437081199632615 27.581139034786073 27 24.063544491219155 19.880249925895424 26.240539802553286 29.815665780332136 28 24.969007495148524 25.17401798660423 22.68768170222956 27.169292816017688 29 29.522678920570115 24.2848360865191 22.1974963604797 23.994988632431085 30 28.755130737993962 21.055190751748942 26.116642792581658 24.073035717675438 31 31.67178462800963 21.27531419610042 23.461581705587996 23.591319470301954 32 34.70525361287186 21.119731091651666 22.82150799526315 21.353507300213334 33 34.400731262493736 20.83762263759723 23.49589613969917 21.26574996020986 34 28.186168216656952 22.67738737199621 29.087469682832417 20.04897472851442 35 25.47175045959439 27.527477100590936 27.08569701376812 19.915075426046556 36 25.703190366259125 30.49282828327076 22.61876079627009 21.18522055420001 37 29.707027742124836 28.168353914692858 21.40315371552312 20.721464627659188 38 29.241154541989918 29.030522324094722 20.85638606220696 20.87193707170841 39 30.563720443955766 25.707570932315875 20.730298769206957 22.9984098545214 40 27.928517923086023 23.695357914149668 21.331531460495327 27.04459270226899 41 23.535978319118396 26.868566956222082 22.163327945237082 27.43212677942244 42 22.066663454251557 24.285858218599007 22.722872249552086 30.92460607759735 43 23.047107147185557 21.949191274496492 24.40617776629096 30.59752381202699 44 24.63520836162449 20.62881565555901 23.60212486657526 31.13385111624124 45 28.55428178429217 22.407617512334944 22.912185712637786 26.125914990735104 46 25.84468264989202 25.97675671650291 22.97176141100953 25.206799222595542 47 23.685866687693384 23.95753479264591 24.208249189960327 28.148349329700384 48 25.499055988014774 22.77755631582713 27.626258865170556 24.09712883098754 49 28.602760048653487 21.898303698803957 25.006826382105096 24.49210987043746 50 24.605639540741457 21.293493545235915 26.619093719290404 27.481773194732224 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 2.0 8 4.0 9 4.0 10 4.0 11 41.0 12 78.0 13 485.0 14 892.0 15 1614.0 16 2336.0 17 2990.5 18 3645.0 19 3140.5 20 2636.0 21 3047.0 22 3458.0 23 3660.5 24 3863.0 25 4081.5 26 4300.0 27 4232.5 28 4165.0 29 5756.5 30 7348.0 31 8852.5 32 10357.0 33 12564.5 34 14772.0 35 15859.5 36 16947.0 37 19546.5 38 22146.0 39 24227.5 40 26309.0 41 28150.5 42 29992.0 43 32166.0 44 34340.0 45 38284.0 46 42228.0 47 41830.0 48 41432.0 49 46796.0 50 52160.0 51 57821.5 52 63483.0 53 66774.5 54 70066.0 55 73503.5 56 76941.0 57 81539.5 58 86138.0 59 102806.0 60 119474.0 61 123535.0 62 127596.0 63 137744.5 64 147893.0 65 141515.5 66 135138.0 67 108702.5 68 82267.0 69 65627.0 70 48987.0 71 38262.5 72 27538.0 73 24577.0 74 21616.0 75 17630.0 76 13644.0 77 14245.0 78 14846.0 79 10330.5 80 5815.0 81 4463.5 82 3112.0 83 2166.5 84 1221.0 85 798.5 86 376.0 87 228.0 88 80.0 89 51.5 90 23.0 91 15.5 92 8.0 93 7.5 94 7.0 95 6.0 96 5.0 97 2.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1369686.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 8.428071768294567 #Duplication Level Percentage of deduplicated Percentage of total 1 65.35020244567927 5.507761962847639 2 9.56643250188633 1.6125315938488747 3 3.761924677379235 0.9511731350361171 4 1.870336621597762 0.6305332511078214 5 1.033214873531904 0.435400455309814 6 0.7029866027941586 0.35548929242992516 7 0.5567680855725679 0.3284736968451101 8 0.44471142192034663 0.29984478241000057 9 0.3641727219900299 0.2762346453288441 >10 10.136429987435278 24.349664586155296 >50 4.208119773065286 24.27344920671324 >100 1.900525905413925 27.55845673716112 >500 0.06653153791407568 3.770926576255304 >1k 0.03326576895703784 4.896006978550689 >5k 0.0017508299451072546 1.1140870925739599 >10k+ 0.002626244917660882 3.6399660074262457 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GTCGGTGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGC 24887 1.8169857909039004 No Hit GTCGGTGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTG 12884 0.9406535512518928 No Hit GTCGGTGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGT 11564 0.844281098003484 No Hit GTCGGTGGGGAATCCGCAGCGGCTTCTGAGCAGATCAGACTCTCCTCGTT 8051 0.5877989553810143 No Hit GTCGGTGGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACT 7049 0.5146435022333586 No Hit GTCGGTGGGGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGC 4989 0.36424406761841766 No Hit GTCGGTGGGGAGTCCCGCCCGGGAGCCGGCAGGGAGCGGAGCTGTGGAGC 4115 0.3004338220584864 No Hit GTCGGTGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCT 4072 0.2972944163844852 No Hit GTCGGTGGGAATCCGCAGCGGCTTCTGAGCAGATCAGACTCTCCTCGTTC 3297 0.2407121048181846 No Hit GTCGGTGGGGGGGCTGGAGAGATGGCTCAGCGGTTAAGAGCACTGACTGC 2724 0.19887769897626173 No Hit GTCGGTGGGGACAATCCGCAGCGGCTTCTGAGCAGATCAGACTCTCCTCG 2460 0.17960320832657994 No Hit GTCGGTGGGGGGCTGGTGAGATGGCTCAGTGGGTTAGAGCACCCGACTGC 2376 0.17347041584713577 No Hit GTCGGTGGGAGTCCCGCCCGGGAGCCGGCAGGGAGCGGAGCTGTGGAGCC 2307 0.16843276488187803 No Hit GTCGGTGGGGGGGCTGGAGAGATGGCTCAGTGGGGAAGAGCACCAACTGT 2275 0.16609646298494693 No Hit GTCGGTGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCTGACTGC 2203 0.1608397837168519 No Hit GTCGGTGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCTGACTA 2057 0.15018040631210364 No Hit GTCGGTGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGTT 1793 0.1309059156624219 No Hit GTCGGTGGGAGAGGCCTTCACAGAGGGCCTCAATTCTACTCTCTGGTTTT 1691 0.12345895336595394 No Hit GTCGGTGGGGGGGCTGGCGAGATGGCTCAGTGGGTAAGAGCACCCGACTG 1570 0.11462481181818314 No Hit GTCGGTGAGCTACTCTAGTATTAATAAATATTAGCCCACCAACAGCTACC 1527 0.11148540614418195 No Hit GTCGGTGGGGGGTCTGGAGAGATGGCTCAGTGGATAAGAGCACTGACTGC 1507 0.11002521745860001 No Hit GTCGGTGGGGGGGGCTGGCGAGATAGCTCAGTGGTTAAGAGCACCGACTG 1503 0.10973317972148361 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0029203773711639017 0.0 0.0 0.0 0.0 8 0.004015518885350365 0.0 0.0 0.0 0.0 9 0.004964641530978633 0.0 0.0 0.0 0.0 10 0.018106339701216192 0.0 0.0 0.0 0.0 11 0.02832766050028985 0.0 0.0 0.0 0.0 12 0.03635869827099058 0.0 0.0 0.0 0.0 13 0.04336760396178394 0.0 0.0 0.0 0.0 14 0.048989330401274456 0.0 0.0 0.0 0.0 15 0.05599823609206782 0.0 0.0 0.0 0.0 16 0.06475936820555953 0.0 0.0 0.0 0.0 17 0.07322846258193484 0.0 0.0 0.0 0.0 18 0.08220862299826384 0.0 0.0 0.0 0.0 19 0.09425517965431493 0.0 0.0 0.0 0.0 20 0.10527960423045866 0.0 0.0 0.0 0.0 21 0.11418675521250857 0.0 0.0 0.0 0.0 22 0.121998764680372 0.0 0.0 0.0 0.0 23 0.12988378358251454 0.0 0.0 0.0 0.0 24 0.14127325533005375 0.0 0.0 0.0 0.0 25 0.1490122553636381 0.0 0.0 0.0 0.0 26 0.157919406345688 0.0 0.0 0.0 0.0 27 0.16668053845917968 0.0 0.0 0.0 0.0 28 0.17719389699536975 0.0 0.0 0.0 0.0 29 0.1872691989258852 0.0 0.0 0.0 0.0 30 0.19727149142212155 0.0 0.0 0.0 0.0 31 0.20690873674696245 0.0 0.0 0.0 0.0 32 0.21800617075738526 0.0 0.0 0.0 0.0 33 0.22764341608222616 0.0 0.0 0.0 0.0 34 0.2383758029212535 0.0 0.0 0.0 0.0 35 0.2502033312744673 0.0 0.0 0.0 0.0 36 0.2659003596444733 0.0 0.0 0.0 0.0 37 0.2786040012090362 0.0 0.0 0.0 0.0 38 0.2903585201279709 0.0 0.0 0.0 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TATTTCG 20 7.857012E-4 44.0 34 ATTACGA 40 8.314601E-9 44.0 39 TCGATAG 20 7.857012E-4 44.0 36 TCCCGTA 20 7.857012E-4 44.0 13 ACCGTAA 35 1.4463512E-7 44.0 29 ATACGTT 25 4.4432876E-5 44.0 10 CGATATT 25 4.4432876E-5 44.0 21 TACGTAC 35 1.4463512E-7 44.0 27 GTCGGTA 935 0.0 42.82353 1 GTCGGTG 140260 0.0 42.61657 1 CGGTGGG 137230 0.0 42.545948 3 TCGGTGG 139760 0.0 42.48884 2 GGTGGGA 42305 0.0 42.169483 4 GTGGGGG 35825 0.0 41.97348 5 GGTGGGG 79425 0.0 41.95581 4 GTGGGAT 13635 0.0 41.934727 5 TGGGGGG 21445 0.0 41.671253 6 GTGGGGC 15280 0.0 41.53796 5 GTGGGAA 8490 0.0 40.9682 5 TGGGGCT 8890 0.0 40.807648 6 >>END_MODULE