##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1527785_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 2049266 Sequences flagged as poor quality 0 Sequence length 52 %GC 54 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.28332973855029 33.0 31.0 34.0 31.0 34.0 2 32.27875785769149 33.0 31.0 34.0 31.0 34.0 3 32.790658704140895 34.0 31.0 34.0 31.0 34.0 4 36.32962338710543 37.0 37.0 37.0 35.0 37.0 5 35.802035460501465 37.0 35.0 37.0 35.0 37.0 6 36.2042306855235 37.0 37.0 37.0 35.0 37.0 7 36.526652957693145 37.0 37.0 37.0 35.0 37.0 8 36.6538536236877 37.0 37.0 37.0 35.0 37.0 9 38.70842731007102 39.0 39.0 39.0 39.0 39.0 10 38.144819169400165 39.0 38.0 39.0 37.0 39.0 11 37.81973399256124 39.0 38.0 39.0 35.0 39.0 12 37.25127338276241 39.0 37.0 39.0 35.0 39.0 13 37.11695895018021 39.0 37.0 39.0 34.0 39.0 14 37.90373968045144 40.0 37.0 40.0 34.0 40.0 15 37.929292732129454 40.0 37.0 40.0 34.0 40.0 16 37.96107045156656 40.0 37.0 40.0 34.0 40.0 17 37.88645056327485 40.0 37.0 40.0 33.0 40.0 18 37.858123835558686 40.0 37.0 40.0 33.0 40.0 19 37.84266610581545 40.0 37.0 40.0 34.0 40.0 20 37.85074802392661 40.0 37.0 40.0 34.0 40.0 21 37.813029640856776 40.0 37.0 40.0 33.0 40.0 22 37.80708214550966 40.0 37.0 40.0 34.0 40.0 23 37.787607855690766 40.0 37.0 40.0 34.0 40.0 24 37.70673060500687 40.0 37.0 40.0 34.0 40.0 25 37.71555474008743 40.0 37.0 40.0 34.0 40.0 26 37.58559991723866 40.0 36.0 40.0 33.0 40.0 27 37.50503790137542 40.0 36.0 40.0 33.0 40.0 28 37.394621293672955 40.0 36.0 40.0 33.0 40.0 29 37.35057967096512 40.0 36.0 40.0 33.0 40.0 30 37.2105197665896 40.0 35.0 40.0 33.0 40.0 31 37.107645859541904 39.0 35.0 40.0 32.0 40.0 32 37.00764273647248 39.0 35.0 40.0 32.0 40.0 33 36.891296200688444 39.0 35.0 40.0 32.0 40.0 34 36.74873979268675 39.0 35.0 40.0 31.0 40.0 35 36.5400870360412 39.0 35.0 40.0 31.0 40.0 36 36.577936197643446 39.0 35.0 40.0 31.0 40.0 37 36.53500472852231 39.0 35.0 40.0 31.0 40.0 38 36.474903697226225 39.0 35.0 40.0 31.0 40.0 39 36.37062343297551 38.0 35.0 40.0 31.0 40.0 40 36.13271971525415 38.0 35.0 40.0 30.0 40.0 41 36.030158603129124 38.0 35.0 40.0 30.0 40.0 42 35.928693981162034 38.0 35.0 40.0 30.0 40.0 43 35.829945941620075 38.0 35.0 40.0 30.0 40.0 44 35.656684393338885 38.0 34.0 40.0 30.0 40.0 45 35.557077509703475 38.0 34.0 40.0 29.0 40.0 46 35.37939730615742 37.0 34.0 40.0 29.0 40.0 47 35.21680201594132 37.0 34.0 40.0 28.0 40.0 48 35.03346466490929 37.0 34.0 40.0 28.0 40.0 49 35.336226727032994 37.0 34.0 40.0 29.0 40.0 50 35.392359020254084 37.0 34.0 40.0 29.0 40.0 51 35.42740376310347 37.0 34.0 40.0 30.0 40.0 52 34.941777202178734 36.0 34.0 40.0 28.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 13 1.0 14 6.0 15 7.0 16 39.0 17 111.0 18 240.0 19 491.0 20 907.0 21 1526.0 22 2558.0 23 3961.0 24 5995.0 25 8282.0 26 11571.0 27 15823.0 28 20560.0 29 27049.0 30 34678.0 31 43915.0 32 56360.0 33 79521.0 34 158611.0 35 163389.0 36 185909.0 37 300321.0 38 622128.0 39 305307.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 0.0 0.0 0.0 100.0 2 0.0 100.0 0.0 0.0 3 0.0 0.0 100.0 0.0 4 100.0 0.0 0.0 0.0 5 0.0 100.0 0.0 0.0 6 0.0 0.0 100.0 0.0 7 99.32126917637827 0.5379487094403558 0.060851055939053295 0.079931058242317 8 99.342545086875 0.5309218032212509 0.08583561138475923 0.04069749851898192 9 97.95370635144486 1.1772507814993272 0.42190716090541686 0.44713570615039727 10 58.565896277008456 30.513461893185166 4.565829911783048 6.354811918023332 11 36.85597672532507 24.67551796594488 20.916367128523092 17.55213818020696 12 32.789984316335705 16.623610600088032 26.49817056448504 24.088234519091227 13 26.774562209103163 17.273501829435514 28.52748252301068 27.424453438450648 14 25.772496103482904 18.268248241077536 29.977611496018575 25.98164415942098 15 26.26833217356849 17.86137085180743 29.280776629290685 26.5895203453334 16 31.172283149186097 19.03798725982864 26.342749062347202 23.446980528638058 17 30.69401434464828 19.42632142435389 23.935057723106713 25.944606507891116 18 29.503929699707115 19.46760449839113 24.832013023199526 26.196452778702227 19 29.293561694772663 21.172263630002156 24.249365382532087 25.28480929269309 20 30.69162324461539 21.010156807364197 23.600352516461992 24.69786743155842 21 30.255369483512634 21.482130675080736 24.2863542361021 23.976145605304534 22 29.90397537459754 20.42702118709821 24.418059929750456 25.250943508553796 23 29.972438912273958 21.500234718186903 24.653754075849594 23.873572293689545 24 29.99322684317214 20.161950669166423 24.06603144735725 25.77879104030419 25 29.16756536242733 21.01337747271462 22.83110147730944 26.987955687548613 26 28.483320369341996 20.875425640204835 23.886942934689788 26.75431105576338 27 26.899728976130966 19.08673642172368 24.078767714879376 29.93476688726598 28 28.211613328869944 22.42964066158322 22.605996488498807 26.752749521048024 29 30.209645795128598 21.201054426316546 22.101376785639346 26.487922992915514 30 28.668313435151905 20.902850093643284 23.55877665466562 26.87005981653919 31 30.70889772240402 21.591535701075408 22.479658570434488 25.219908006086083 32 32.55902357234249 20.78197754708271 22.968760522060094 23.690238358514705 33 33.33364238707908 20.236611547744413 22.587843647432788 23.841902417743718 34 30.244877922143832 21.94619927330078 24.95508147795357 22.853841326601817 35 28.23918417618796 23.959993480592566 26.09217153849232 21.708650804727156 36 28.31643134663826 24.732465185095542 23.340356986355115 23.610746481911086 37 29.219827977431915 25.4474040949296 21.875588625390748 23.45717930224773 38 31.055363237373772 25.31389287676661 21.418644529309518 22.2120993565501 39 30.731100794138 23.2175813193602 21.687179702391003 24.364138184110796 40 28.01432317717661 23.70185227296017 22.064241538189773 26.219583011673446 41 26.85390769182722 23.359924968256927 22.899857802744982 26.88630953717087 42 25.916938064653394 23.003163083757794 22.9723227731295 28.107576078459314 43 25.952023797789064 21.403614757674212 24.548252886643315 28.096108557893412 44 25.930796685252183 21.335297613877362 24.16148025683342 28.572425444037037 45 27.27288697514134 21.175825881071564 23.750113455256663 27.80117368853043 46 27.869832418046265 22.926989468424306 23.197574155819694 26.005603957709738 47 27.394345097220175 22.7255514901433 23.55726391791012 26.322839494726402 48 27.457782445031537 22.122018322657965 24.816690463805088 25.603508768505407 49 28.07146558816669 21.454071848164173 24.352865855384316 26.121596708284823 50 26.269991304203554 22.020908949838624 25.680609545076138 26.02849020088168 51 25.628883707629953 22.210245034075616 25.045992077163238 27.114879181131197 52 25.956562008055567 22.426615188072216 25.06028987940072 26.556532924471494 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 6.0 4 12.0 5 10.0 6 8.0 7 29.0 8 50.0 9 337.0 10 624.0 11 1757.5 12 2891.0 13 3509.5 14 3700.0 15 3272.0 16 3400.0 17 3528.0 18 3836.0 19 4144.0 20 3962.0 21 3780.0 22 4298.5 23 4817.0 24 6246.0 25 7675.0 26 8431.5 27 9188.0 28 11664.5 29 14141.0 30 16613.5 31 19086.0 32 21079.5 33 23073.0 34 24552.0 35 26031.0 36 30691.5 37 35352.0 38 37773.0 39 43578.0 40 46962.0 41 52689.5 42 58417.0 43 63400.5 44 68384.0 45 70703.5 46 73023.0 47 78388.5 48 83754.0 49 88224.0 50 92694.0 51 102022.5 52 111351.0 53 119665.5 54 127980.0 55 139755.5 56 151531.0 57 167915.0 58 184299.0 59 187206.0 60 190113.0 61 184918.5 62 179724.0 63 158425.0 64 126820.0 65 116514.0 66 92721.0 67 68928.0 68 60710.0 69 52492.0 70 45834.5 71 39177.0 72 37222.0 73 35267.0 74 26380.0 75 17493.0 76 11745.0 77 5997.0 78 4782.5 79 3568.0 80 2536.5 81 1505.0 82 1079.5 83 654.0 84 434.5 85 215.0 86 135.5 87 56.0 88 46.0 89 23.5 90 11.0 91 6.0 92 1.0 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 52 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 52 2049266.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 7.903549629439449 #Duplication Level Percentage of deduplicated Percentage of total 1 67.09561023823512 5.302934854354168 2 9.426217560139431 1.4900115660891124 3 4.29543528151338 1.0184755778245864 4 2.2333642786693004 0.706060216683202 5 1.2650521384052402 0.49992011798571595 6 0.7918060679679912 0.3754847133045795 7 0.5265705529859764 0.2913243549248227 8 0.3985642066684951 0.25200575903380895 9 0.321997984105646 0.2290434343162585 >10 6.090684922946738 13.786687605606149 >50 4.777725101914496 27.01767661043375 >100 2.6540858844550206 36.49164822934598 >500 0.08274720998533569 4.3972003697661 >1k 0.035815956560816944 4.8786688217255945 >5k 0.003087582462139391 1.855007898842012 >10k+ 0.0012350329848557567 1.4078498697641728 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CATGATGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCT 14479 0.7065456607390158 No Hit CATGATGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTC 14367 0.7010802892352677 No Hit CATGATGGGGAATCCGCAGCGGCTTCTGAGCAGATCAGACTCTCCTCGTTCG 9594 0.46816762684785673 No Hit CATGATGGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGC 9449 0.46109192266889704 No Hit CATGATGGGGAGTCCCGCCCGGGAGCCGGCAGGGAGCGGAGCTGTGGAGCCT 8130 0.39672741362029135 No Hit CATGATGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGTT 5673 0.2768308262568159 No Hit CATGATGGGGATGCCGACTGGCGATGCGGCGGCGTTATTCCCATGACCCGCC 5162 0.2518950687709648 No Hit CATGATGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGTTC 4742 0.2313999256319092 No Hit CATGATGGGAGTCCCGCCCGGGAGCCGGCAGGGAGCGGAGCTGTGGAGCCTC 3979 0.19416708226262477 No Hit CATGATGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCTGACTGCT 3706 0.1808452392222386 No Hit CATGATGGGGCTCTTGAGTCACCCCCGCGCAGCCTAGGCTTGCCGTGCGAGT 2895 0.14127009377991925 No Hit CATGATGGGGGGGCTGGTGAGATGGCTCAGTGGGTTAGAGCACCCGATTGCT 2794 0.13634149983457491 No Hit CATGATGGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGT 2549 0.12438599967012579 No Hit CATGATGGGGGTCTCTTGCTGCAGCAACGAGAGTGGGAGCACCTGGAGCGCG 2467 0.12038456696202444 No Hit CATGATGGGAAGAACGAAAGTCGGAGGTTCGAAGACGATCAGATACCGTCGT 2446 0.11935980980507167 No Hit CATGATGGGGGCGGCAGCACTCCAGTCCATAGCTTGCAGCAGCCAGGTTCCA 2351 0.11472400361885671 No Hit CATGATGGGGACAATCCGCAGCGGCTTCTGAGCAGATCAGACTCTCCTCGTT 2120 0.1034516748923761 No Hit CATGATGGGAATCCGCAGCGGCTTCTGAGCAGATCAGACTCTCCTCGTTCGC 2105 0.10271970549455267 No Hit CATGATGGGGCTCTTTCCAGCCAGCGCCGAGCGATGGGCATCTCTCGGGACA 2105 0.10271970549455267 No Hit CATGATGGGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTG 2094 0.10218292793614885 No Hit CATGATGGGGAGATGCGCCACGGCTTCGGTAGCGACCGGCTGTCTTCTGCTG 2070 0.10101177689963137 No Hit CATGATGGGGTCTCTTGCTGCAGCAACGAGAGTGGGAGCACCTGGAGCGCGA 2058 0.10042620138137265 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.03694005561015505 0.0 0.0 0.0 0.0 8 0.05426333135864256 0.0 0.0 0.0 0.0 9 0.0617294192164414 0.0 0.0 0.0 0.0 10 0.09091059920966824 0.0 0.0 0.0 0.0 11 0.10711152188149319 0.0 0.0 0.0 0.0 12 0.1164807301736329 0.0 0.0 0.0 0.0 13 0.12633791806432157 0.0 0.0 0.0 0.0 14 0.13712226719225323 0.0 0.0 0.0 0.0 15 0.1443443652507776 0.0 0.0 0.0 0.0 16 0.15537270417798374 0.0 0.0 0.0 0.0 17 0.16620585126577028 0.0 0.0 0.0 0.0 18 0.1756726554776198 0.0 0.0 0.0 0.0 19 0.18840892299974724 0.0 0.0 0.0 0.0 20 0.19870529252912994 0.0 0.0 0.0 0.0 21 0.20919685389793224 0.0 0.0 0.0 0.0 22 0.21944442546746007 0.0 0.0 0.0 0.0 23 0.23242468278886197 0.0 0.0 0.0 0.0 24 0.24525854623069918 0.0 0.0 0.0 0.0 25 0.25692125863601895 0.0 0.0 0.0 0.0 26 0.27019430371655023 0.0 0.0 0.0 0.0 27 0.2815642283627406 0.0 0.0 0.0 0.0 28 0.2988387061513732 0.0 0.0 0.0 0.0 29 0.31059901447640276 0.0 0.0 0.0 0.0 30 0.32304249423940085 0.0 0.0 0.0 0.0 31 0.33436362092573635 0.0 0.0 0.0 0.0 32 0.34627032313033057 0.0 0.0 0.0 0.0 33 0.3556883293823252 0.0 0.0 0.0 0.0 34 0.3661798907511275 0.0 0.0 0.0 0.0 35 0.3842351358974384 0.0 0.0 0.0 0.0 36 0.39965529121158505 0.0 0.0 0.0 0.0 37 0.414441073047618 0.0 0.0 0.0 0.0 38 0.4257134017740986 0.0 0.0 0.0 0.0 39 0.43742491213927326 0.0 0.0 0.0 0.0 40 0.4502099776212556 0.0 0.0 0.0 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CCGATTA 20 6.312617E-4 46.0 46 TATATCG 30 1.8621213E-6 46.0 24 CGATTAC 20 6.312617E-4 46.0 20 GCCGATA 20 6.312617E-4 46.0 10 CGAATAC 20 6.312617E-4 46.0 37 CGATCGA 30 1.8621213E-6 46.0 21 TATCGGC 45 3.110472E-10 46.0 42 CATGATG 212090 0.0 44.15536 1 ATGATGG 211055 0.0 44.098362 2 ATGGGAT 20625 0.0 44.070786 5 TGATGGG 207090 0.0 44.04196 3 ATGGGAC 10990 0.0 43.90719 5 GATGGGA 63625 0.0 43.820198 4 GATGGGG 123085 0.0 43.804363 4 ATGGGGG 50220 0.0 43.760452 5 ATGGGGT 17270 0.0 43.696003 5 ATGGGGA 33670 0.0 43.349567 5 ATAGTCG 85 0.0 43.294113 14 ATGGGAG 20470 0.0 43.14607 5 ATGGGGC 22765 0.0 43.039757 5 >>END_MODULE