SRR1527784_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1527784_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2063116
Sequences flagged as poor quality	0
Sequence length	52
%GC	54

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CATGATGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCT	14183	0.6874552860818296	No Hit
CATGATGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTC	13733	0.6656436186816447	No Hit
CATGATGGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGC	9179	0.44490954459177284	No Hit
CATGATGGGGAATCCGCAGCGGCTTCTGAGCAGATCAGACTCTCCTCGTTCG	9028	0.43759051841971075	No Hit
CATGATGGGGAGTCCCGCCCGGGAGCCGGCAGGGAGCGGAGCTGTGGAGCCT	7848	0.38039547945922575	No Hit
CATGATGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGTT	5533	0.2681865682782742	No Hit
CATGATGGGGATGCCGACTGGCGATGCGGCGGCGTTATTCCCATGACCCGCC	4948	0.23983140065803377	No Hit
CATGATGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGTTC	4422	0.21433598498581757	No Hit
CATGATGGGAGTCCCGCCCGGGAGCCGGCAGGGAGCGGAGCTGTGGAGCCTC	3832	0.18573846550557507	No Hit
CATGATGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCTGACTGCT	3610	0.1749780429214838	No Hit
CATGATGGGGCTCTTGAGTCACCCCCGCGCAGCCTAGGCTTGCCGTGCGAGT	2770	0.13426293044113854	No Hit
CATGATGGGGGGGCTGGTGAGATGGCTCAGTGGGTTAGAGCACCCGATTGCT	2633	0.12762248947708224	No Hit
CATGATGGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGT	2479	0.12015805218901893	No Hit
CATGATGGGGGTCTCTTGCTGCAGCAACGAGAGTGGGAGCACCTGGAGCGCG	2394	0.116038070568984	No Hit
CATGATGGGAAGAACGAAAGTCGGAGGTTCGAAGACGATCAGATACCGTCGT	2359	0.11434160754896963	No Hit
CATGATGGGGGCGGCAGCACTCCAGTCCATAGCTTGCAGCAGCCAGGTTCCA	2178	0.10556847021689522	No Hit
CATGATGGGGCTCTTTCCAGCCAGCGCCGAGCGATGGGCATCTCTCGGGACA	2070	0.10033367004085084	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TAACGGT	35	1.02010745E-7	46.000004	30
ATACGCA	35	1.02010745E-7	46.000004	10
TAATACG	20	6.312627E-4	46.0	18
ATAGCGT	20	6.312627E-4	46.0	31
TACGAAC	25	3.4181074E-5	46.0	16
TATCGGC	30	1.8621286E-6	46.0	42
CATGATG	212980	0.0	44.235416	1
ATGATGG	211910	0.0	44.188522	2
TGATGGG	208025	0.0	44.13258	3
ATGGGAT	20655	0.0	44.040184	5
GATGGGA	63805	0.0	43.927277	4
GATGGGG	123865	0.0	43.91846	4
ATGGGGG	50110	0.0	43.851925	5
ATGGGGT	17170	0.0	43.655792	5
ATGGGGA	33885	0.0	43.61074	5
ATGGGAC	11375	0.0	43.47253	5
ATGGGAG	20300	0.0	43.371426	5
ATGGGGC	23500	0.0	43.20085	5
CACGTCA	75	0.0	42.93333	46
TGGGGGG	24255	0.0	42.633686	6