##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1527744_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 738043 Sequences flagged as poor quality 0 Sequence length 50 %GC 52 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 27.90987652480953 33.0 31.0 34.0 3.0 34.0 2 30.53641183508278 34.0 31.0 34.0 16.0 34.0 3 32.50744197831292 34.0 31.0 34.0 28.0 34.0 4 36.39125498107834 37.0 35.0 37.0 35.0 37.0 5 36.33101594351549 37.0 37.0 37.0 35.0 37.0 6 36.34546767600262 37.0 37.0 37.0 35.0 37.0 7 36.62871404511661 37.0 37.0 37.0 35.0 37.0 8 36.69326583952426 37.0 37.0 37.0 35.0 37.0 9 38.594776998088186 39.0 39.0 39.0 38.0 39.0 10 38.17735687487043 39.0 39.0 39.0 37.0 39.0 11 37.30796579603086 39.0 35.0 39.0 35.0 39.0 12 37.120463170845056 39.0 37.0 39.0 34.0 39.0 13 37.09294580397077 39.0 37.0 39.0 33.0 39.0 14 37.951516375062155 40.0 37.0 40.0 34.0 40.0 15 38.016745636771844 40.0 37.0 40.0 34.0 40.0 16 38.04802701197627 40.0 37.0 40.0 35.0 40.0 17 38.0095265452013 40.0 37.0 40.0 34.0 40.0 18 37.9289214856045 40.0 37.0 40.0 34.0 40.0 19 37.914586277493314 40.0 37.0 40.0 34.0 40.0 20 37.843328911730076 40.0 36.0 40.0 34.0 40.0 21 37.76758129268891 40.0 36.0 40.0 34.0 40.0 22 37.75528390622227 40.0 36.0 40.0 34.0 40.0 23 37.59205222459938 40.0 36.0 40.0 34.0 40.0 24 37.41874389432594 40.0 35.0 40.0 33.0 40.0 25 37.33440328002569 40.0 35.0 40.0 33.0 40.0 26 37.16401618875865 39.0 35.0 40.0 33.0 40.0 27 37.035351598755085 39.0 35.0 40.0 33.0 40.0 28 36.78717364706392 39.0 35.0 40.0 33.0 40.0 29 36.706721695077384 39.0 35.0 40.0 33.0 40.0 30 36.789821189280296 39.0 35.0 40.0 33.0 40.0 31 36.74568690442156 39.0 35.0 40.0 33.0 40.0 32 36.688402979230204 39.0 35.0 40.0 33.0 40.0 33 36.527444877872966 39.0 35.0 40.0 33.0 40.0 34 36.154851411096644 39.0 35.0 40.0 31.0 40.0 35 36.00714728003653 38.0 35.0 40.0 31.0 40.0 36 35.88470861453872 38.0 35.0 40.0 31.0 40.0 37 35.65070463374085 37.0 35.0 40.0 31.0 40.0 38 35.42051208398426 37.0 35.0 40.0 30.0 40.0 39 35.23432510029903 37.0 35.0 40.0 30.0 40.0 40 34.97813677522854 36.0 35.0 40.0 29.0 40.0 41 34.754842197541336 36.0 35.0 40.0 27.0 40.0 42 34.63545890957573 36.0 35.0 40.0 27.0 40.0 43 34.50883620602052 35.0 34.0 40.0 27.0 40.0 44 34.174675459288956 35.0 34.0 40.0 24.0 40.0 45 34.13084738965074 35.0 34.0 40.0 24.0 40.0 46 33.893199989702495 35.0 34.0 39.0 23.0 40.0 47 33.86391036836607 35.0 34.0 39.0 23.0 40.0 48 33.70749942754013 35.0 34.0 39.0 23.0 40.0 49 33.631839879248226 35.0 34.0 39.0 24.0 40.0 50 33.17306986178312 35.0 33.0 38.0 23.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 1.0 13 1.0 14 4.0 15 13.0 16 34.0 17 86.0 18 151.0 19 325.0 20 543.0 21 949.0 22 1590.0 23 2591.0 24 3763.0 25 4974.0 26 6813.0 27 9043.0 28 11493.0 29 12732.0 30 13390.0 31 15310.0 32 20311.0 33 33572.0 34 64466.0 35 74319.0 36 84839.0 37 132481.0 38 159162.0 39 85087.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 0.0 100.0 0.0 0.0 2 0.0 100.0 0.0 0.0 3 0.0 100.0 0.0 0.0 4 0.0 100.0 0.0 0.0 5 0.0 0.0 0.0 100.0 6 100.0 0.0 0.0 0.0 7 99.10804655013325 0.5654142102831407 0.2035111775330164 0.12302806205058514 8 98.57596373111052 0.8616029147353204 0.2682770516081041 0.2941563025460576 9 91.52664546645656 4.446895370594938 2.551341859485152 1.4751173034633482 10 47.25469925194061 37.38061332469788 6.834290142986249 8.530397280375263 11 32.9463188459209 25.83264118757308 22.020803665911064 19.200236300594952 12 28.682881620718575 21.655648790111144 25.578184468926608 24.083285120243673 13 22.261711038516726 21.837074533597637 28.207435068146435 27.693779359739203 14 24.572822992698256 23.452969542425034 27.75149957387307 24.22270789100364 15 24.83459635820677 24.13409516789672 26.28207299574686 24.749235478149647 16 29.611960278737147 24.85586883149085 23.250542312575284 22.28162857719672 17 28.25526425967051 25.872069784551847 21.67055307075604 24.202112885021602 18 26.437754981755806 26.052953554196705 22.50681870839504 25.002472755652448 19 26.43219974987907 26.149695884928114 22.281357590275906 25.136746774916908 20 28.032648504219942 25.80283262628329 21.752933094684185 24.41158577481258 21 28.178032987237874 23.926790173472277 24.19018946050569 23.70498737878416 22 27.86517858715549 23.4357618729532 23.364898793159746 25.33416074673156 23 26.778792021603078 25.106667226706303 22.161445877814707 25.953094873875916 24 27.717355221850216 26.001872519622843 22.450453428865256 23.830318829661685 25 27.435664317661708 26.32556639653787 20.77412833669583 25.464640949104588 26 27.13148149904545 26.20809356636402 21.761604676150306 24.898820258440228 27 27.53565849144291 24.931067702017362 20.81396341405582 26.71931039248391 28 27.180530131713194 26.363233578531332 21.238870905895727 25.217365383859747 29 28.813632810012425 24.75411324272434 21.459860739821394 24.972393207441844 30 27.057637563123016 25.667745646256385 22.44936948118199 24.825247309438613 31 28.827317649513645 25.189182744094857 21.01503570930149 24.968463897090007 32 29.11212490329154 24.394378105340746 22.067819896672685 24.425677094695025 33 29.719542086301203 24.982148736591228 21.585192190698915 23.71311698640865 34 28.00771770750485 26.162703257127294 23.529252360634814 22.300326674733046 35 27.353961761035606 26.73611158157452 22.961128281143512 22.948798376246373 36 28.6515826313643 26.85331342482755 21.362440941787945 23.132663002020205 37 30.165993038346006 25.596476086081704 20.989156458363535 23.248374417208755 38 29.00725296493565 26.7558936267941 21.572320311960144 22.66453309631011 39 28.616354331658183 25.077129652337334 22.416173583381998 23.89034243262249 40 28.304854866179884 24.749506465070464 22.291655093266925 24.65398357548273 41 26.087639880061186 25.74890622904086 22.9893109209084 25.174142969989553 42 26.9340675272308 23.961341005876353 22.79135497525212 26.31323649164073 43 27.421437504318853 23.30026841254507 23.474919483011153 25.803374600124922 44 25.748635242120038 23.918525072387382 23.897794572944935 26.435045112547645 45 27.101130963914027 24.640705216362733 22.885929410616995 25.37223440910624 46 27.45856271247068 24.859120674540645 22.871431610353326 24.810885002635345 47 26.903446005178562 24.90288506225247 23.047573108883903 25.146095823685073 48 26.991381260983438 24.31281104217505 24.54287893794806 24.152928758893452 49 27.946068183019147 24.27649879478567 23.761894632155578 24.015538390039602 50 25.277117999899733 24.093447129774283 24.612251589677026 26.017183280648958 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 10.0 4 20.0 5 40.0 6 60.0 7 452.0 8 844.0 9 1912.5 10 2981.0 11 2704.0 12 2427.0 13 2687.0 14 2947.0 15 2835.5 16 2724.0 17 2890.0 18 3056.0 19 3131.5 20 3207.0 21 3965.0 22 4723.0 23 5287.0 24 5851.0 25 6584.5 26 7318.0 27 7897.5 28 8477.0 29 9855.5 30 11234.0 31 11198.0 32 11162.0 33 11755.0 34 12348.0 35 13616.0 36 14884.0 37 15557.5 38 16231.0 39 16900.0 40 17569.0 41 20583.0 42 23597.0 43 23960.0 44 24323.0 45 27752.0 46 31181.0 47 31402.5 48 31624.0 49 33663.0 50 35702.0 51 38996.5 52 42291.0 53 41847.0 54 41403.0 55 49155.5 56 56908.0 57 58918.0 58 60928.0 59 59147.0 60 57366.0 61 56776.0 62 56186.0 63 52046.5 64 47907.0 65 40358.5 66 32810.0 67 27412.0 68 22014.0 69 19173.0 70 16332.0 71 13399.5 72 10467.0 73 11137.5 74 11808.0 75 8139.0 76 4470.0 77 3123.5 78 1777.0 79 1053.0 80 329.0 81 323.5 82 318.0 83 215.0 84 112.0 85 112.0 86 112.0 87 62.5 88 13.0 89 7.0 90 1.0 91 1.0 92 1.0 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 738043.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 13.623976579266591 #Duplication Level Percentage of deduplicated Percentage of total 1 75.1836518642341 10.243003121420584 2 8.960403922548005 2.4415266636312505 3 3.2288414383512194 1.3196898040278742 4 1.5888879565006655 0.865878892257753 5 0.7909437504626644 0.538789956591031 6 0.5359618749919494 0.43811592193620763 7 0.36097432235243615 0.3442533999412354 8 0.26598107962459777 0.28989759994668507 9 0.20698527624914048 0.2537966300284184 >10 4.543676788773354 17.789468135067434 >50 2.9237920181279238 27.84338391216196 >100 1.359903264245546 31.477729857356852 >500 0.03799729708921379 3.5051998339404915 >1k 0.011999146449225406 2.6492662716922166 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source AAAACGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGC 2424 0.32843614802931537 No Hit AAAACGGGGAGTCCCGCCCGGGAGCCGGCAGGGAGCGGAGCTGTGGAGCC 2338 0.3167837104342159 No Hit AAAACGGGGGAGTCCCGCCCGGGAGCCGGCAGGGAGCGGAGCTGTGGAGC 2329 0.31556426929054265 No Hit AAAACGGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 2126 0.28805909682769165 No Hit AAAACGGGGGAATCCGCAGCGGCTTCTGAGCAGATCAGACTCTCCTCGTT 1510 0.20459512521628143 No Hit AAAACGGGGAATCCGCAGCGGCTTCTGAGCAGATCAGACTCTCCTCGTTC 1471 0.19931088026036423 No Hit AAAACGGGGAAGAACGAAAGTCGGAGGTTCGAAGACGATCAGATACCGTC 1300 0.17614149853057343 No Hit AAAACGGGGGCGGCAGCACTCCAGTCCATAGCTTGCAGCAGCCAGGTTCC 1245 0.16868935820812608 No Hit AAAACGGGGGAGATGCGCCACGGCTTCGGTAGCGACCGGCTGTCTTCTGC 1237 0.16760541052486103 No Hit AAAACGGGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTCTGTG 1197 0.16218567210853568 No Hit AAAACGGGATCGGAAGAGCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAA 1148 0.15554649254853714 Illumina Single End Adapter 2 (97% over 34bp) AAAACGGGGGCAAGCTCCGTTGGGCGCCTTGGATCCATTTCCATCTGGTT 1122 0.15202366257792568 No Hit AAAACGGGGGCTCTTTCTAAGCCGGCGATCCGTCAGGGTGAAGCCATGTT 924 0.12519595741711526 No Hit AAAACGGGGGGCTTTGCAGACGCCACTGTCGCTTTTCGCCGCTTGCTGCA 922 0.124924970496299 No Hit AAAACGGGGGGGCCAGGTGGTGGTGGCGCACGCCTTTAAAAACCCAGCAC 921 0.12478947703589087 No Hit AAAACGGGGTGCCGGTAGTGGTGGCGCACGCCGGTAGGATTTGCTGAAGG 895 0.1212666470652794 No Hit AAAACGGGGGGTCTCTTGCTGCAGCAACGAGAGTGGGAGCACCTGGAGCG 891 0.12072467322364687 No Hit AAAACGGGGGCTTTGCAGACGCCACTGTCGCTTTTCGCCGCTTGCTGCAG 877 0.118827764777933 No Hit AAAACGGGGGACGGCAGTGGTGCTGGGAGTCTCGTGTCCGTGGTGCCGTT 877 0.118827764777933 No Hit AAAACGGGGCAGGGTGTCACTGGAGAGTCGTTCCTGTAAATGGCTTAACC 858 0.11625338903017847 No Hit AAAACGGGGGCCGGTAGTGGTGGCGCACGCCGGTAGGATTTGCTGAAGGA 851 0.11530493480732151 No Hit AAAACGGGGGCTCTTTCTTGACTCCATCTTCGCGGTAGCAGCAGCGGCGT 842 0.11408549366364831 No Hit AAAACGGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTG 782 0.10595588603916031 No Hit AAAACGGGGGATGCCGACTGGCGATGCGGCGGCGTTATTCCCATGACCCG 764 0.10351700375181391 No Hit AAAACGGGGCCCGCCCGGGAGCCGGCAGGGAGCGGAGCTGTGGAGCCTCC 747 0.10121361492487564 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.05528133184651843 0.0 0.0 0.0 0.0 8 0.08712229504242977 0.0 0.0 0.0 0.0 9 0.16950231897057488 0.0 0.0 0.0 0.0 10 0.25784405515667785 0.0 0.0 0.0 0.0 11 0.30973805049299297 0.0 0.0 0.0 0.0 12 0.3659678365623683 0.0 0.0 0.0 0.0 13 0.3952344240105251 0.0 0.0 0.0 0.0 14 0.4361534490537814 0.0 0.0 0.0 0.0 15 0.480459810607241 0.0 0.0 0.0 0.0 16 0.5242241983190681 0.0 0.0 0.0 0.0 17 0.5666336514268139 0.0 0.0 0.0 0.0 18 0.6049783007223156 0.0 0.0 0.0 0.0 19 0.6496911426569997 0.0 0.0 0.0 0.0 20 0.696707373418622 0.0 0.0 0.0 0.0 21 0.740471761130449 0.0 0.0 0.0 0.0 22 0.7869460180504388 0.0 0.0 0.0 0.0 23 0.8391110003075701 0.0 0.0 0.0 0.0 24 0.8935793713916398 0.0 0.0 0.0 0.0 25 0.9481832359361175 0.0 0.0 0.0 0.0 26 1.002516113559779 0.0 0.0 0.0 0.0 27 1.0491258639401768 0.0 0.0 0.0 0.0 28 1.1007488723556758 0.0 0.0 0.0 0.0 29 1.1363836524430149 0.0 0.0 0.0 0.0 30 1.1726958998323946 0.0 0.0 0.0 0.0 31 1.1992526180723888 0.0 0.0 0.0 0.0 32 1.225944829772791 0.0 0.0 0.0 0.0 33 1.2518240807107446 0.0 0.0 0.0 0.0 34 1.2770258643466572 0.0 0.0 0.0 0.0 35 1.309273307923793 0.0 0.0 0.0 0.0 36 1.3329846634952165 0.0 0.0 0.0 0.0 37 1.3577799667499049 0.0 0.0 0.0 0.0 38 1.3779684923507167 0.0 0.0 0.0 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AGCGTTA 20 7.854649E-4 44.0 23 TAATAGA 30 2.5264817E-6 44.0 26 GGTAATC 25 4.4412875E-5 44.0 8 TTAATAG 40 8.305506E-9 44.0 25 GCGAATT 20 7.854649E-4 44.0 37 CCGATAT 20 7.854649E-4 44.0 17 CTATACT 25 4.4412875E-5 44.0 30 TTATGCG 25 4.4412875E-5 44.0 37 CCGGATA 20 7.854649E-4 44.0 13 ACCGATA 20 7.854649E-4 44.0 16 CAATTAT 20 7.854649E-4 44.0 37 CCGCTTA 20 7.854649E-4 44.0 21 TGCGGAT 40 8.305506E-9 44.0 24 GCGTTAG 20 7.854649E-4 44.0 24 TCGATAT 20 7.854649E-4 44.0 37 CGTTAGG 20 7.854649E-4 44.0 25 TCAATTA 20 7.854649E-4 44.0 36 AATGCGA 30 2.5264817E-6 44.0 27 ATATCGA 20 7.854649E-4 44.0 40 GTAGCAA 25 4.4412875E-5 44.0 8 >>END_MODULE