##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1527741_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1410969 Sequences flagged as poor quality 0 Sequence length 50 %GC 58 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.46806910711717 33.0 31.0 34.0 31.0 34.0 2 32.850955619861246 34.0 31.0 34.0 31.0 34.0 3 33.099591132051806 34.0 33.0 34.0 31.0 34.0 4 35.86653144044979 37.0 35.0 37.0 35.0 37.0 5 36.302642368471595 37.0 37.0 37.0 35.0 37.0 6 36.30418598849443 37.0 37.0 37.0 35.0 37.0 7 36.4947932945373 37.0 37.0 37.0 35.0 37.0 8 36.66428178081871 37.0 37.0 37.0 35.0 37.0 9 38.77414174230617 39.0 39.0 39.0 39.0 39.0 10 38.32636365504841 39.0 39.0 39.0 37.0 39.0 11 37.95543842564933 39.0 38.0 39.0 35.0 39.0 12 37.404719026427934 39.0 37.0 39.0 35.0 39.0 13 37.26584283566825 39.0 37.0 39.0 35.0 39.0 14 37.99799286873064 40.0 38.0 40.0 34.0 40.0 15 38.04891815482835 40.0 38.0 40.0 34.0 40.0 16 38.10740065869626 40.0 38.0 40.0 34.0 40.0 17 37.9638702196859 40.0 38.0 40.0 34.0 40.0 18 37.88038645781729 40.0 38.0 40.0 34.0 40.0 19 37.87676128958184 40.0 38.0 40.0 34.0 40.0 20 37.72820451760457 40.0 37.0 40.0 33.0 40.0 21 37.71778898048079 40.0 37.0 40.0 33.0 40.0 22 37.777618785387915 40.0 37.0 40.0 34.0 40.0 23 37.67302541728415 40.0 37.0 40.0 34.0 40.0 24 37.575376213084766 40.0 37.0 40.0 33.0 40.0 25 37.53781124886514 39.0 36.0 40.0 33.0 40.0 26 37.40406344859455 39.0 36.0 40.0 33.0 40.0 27 37.27718185162112 39.0 36.0 40.0 33.0 40.0 28 37.05091394637302 39.0 35.0 40.0 32.0 40.0 29 37.22534655261739 40.0 36.0 40.0 33.0 40.0 30 37.39707746945539 40.0 36.0 40.0 33.0 40.0 31 37.43389472057855 40.0 36.0 40.0 33.0 40.0 32 37.464492132711634 40.0 36.0 40.0 33.0 40.0 33 37.35011329093694 40.0 35.0 40.0 33.0 40.0 34 36.94057275531922 40.0 35.0 40.0 32.0 40.0 35 36.920981254726364 39.0 35.0 40.0 32.0 40.0 36 36.8820016598522 39.0 35.0 40.0 32.0 40.0 37 36.787021543350704 39.0 35.0 40.0 32.0 40.0 38 36.68609799364834 39.0 35.0 40.0 32.0 40.0 39 36.55611781690455 39.0 35.0 40.0 31.0 40.0 40 36.289364968330275 39.0 35.0 40.0 31.0 40.0 41 36.14373030165794 39.0 35.0 40.0 31.0 40.0 42 36.0712467814672 38.0 35.0 40.0 30.0 40.0 43 35.92775815769163 38.0 35.0 40.0 30.0 40.0 44 35.59537027390396 38.0 35.0 40.0 29.0 40.0 45 35.5061783781217 37.0 35.0 40.0 29.0 40.0 46 35.32819289438677 37.0 35.0 40.0 29.0 40.0 47 35.215951590715314 37.0 34.0 40.0 29.0 40.0 48 35.04112918143488 36.0 34.0 40.0 28.0 40.0 49 34.896189072899546 36.0 34.0 40.0 28.0 40.0 50 34.2923572381817 35.0 33.0 39.0 26.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 13 2.0 14 3.0 15 20.0 16 35.0 17 99.0 18 224.0 19 393.0 20 635.0 21 1088.0 22 1697.0 23 2630.0 24 3869.0 25 5323.0 26 7078.0 27 9395.0 28 12296.0 29 16556.0 30 22031.0 31 27767.0 32 35362.0 33 49634.0 34 100509.0 35 104092.0 36 133218.0 37 235209.0 38 461097.0 39 180707.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 100.0 0.0 0.0 0.0 2 0.0 0.0 0.0 100.0 3 100.0 0.0 0.0 0.0 4 0.0 100.0 0.0 0.0 5 0.0 100.0 0.0 0.0 6 0.0 0.0 100.0 0.0 7 99.66448589586305 0.27406697099652794 0.04061038903051733 0.02083674410989894 8 99.70679724359643 0.21297420425253852 0.054430678491164584 0.02579787365987488 9 99.19296596877749 0.4241765765229427 0.10957008977518286 0.2732873649243889 10 65.7392189339383 23.173932240892604 4.40874321122576 6.678105613943325 11 37.176862142258265 27.31420747018538 18.003726517024823 17.505203870531528 12 31.37857741736353 17.838662649569198 25.930973678372805 24.85178625469447 13 24.145817519732894 17.097044655127082 29.908382111867805 28.84875571327223 14 25.483196299847833 16.731409407293853 29.765218087711354 28.020176205146957 15 25.719913052660974 16.708588211363963 28.39700943110727 29.17448930486779 16 31.784256067992988 17.001153108253973 24.96794755944319 26.24664326430985 17 32.17342124454896 17.422140387209073 22.49751766339303 27.906920704848936 18 30.009589154687312 19.15520468557424 23.249554029890096 27.585652129848352 19 31.528190909934946 19.44181622700428 21.485801601594364 27.54419126146641 20 30.224547810759837 20.047782764894198 22.517787421268647 27.20988200307732 21 32.335224941157456 20.021276158441466 22.966486152424327 24.677012747976747 22 32.478743331710334 17.90967767541314 23.48371934464896 26.127859648227563 23 31.403595684951263 19.198720879055458 22.80893485257295 26.58874858342033 24 31.140017959288972 19.1549211924571 22.552160961722052 27.152899886531877 25 29.508727689977597 19.68632904053881 22.41161924889916 28.393324020584437 26 28.529117223695206 18.319750469358294 23.483577598090392 29.667554708856116 27 28.497153374737504 16.90887609862442 25.002958959410165 29.59101156722791 28 31.93996466258295 20.085132983077585 20.970907227586146 27.003995126753317 29 32.123313836094205 20.641488225467747 20.94241616931343 26.292781769124623 30 30.826616318289062 19.359957589429673 23.23325317565446 26.5801729166268 31 32.26279244972781 19.783992419394046 20.855312909071706 27.09790222180643 32 34.020875015680716 20.724197342393776 20.356506769461273 24.898420872464243 33 35.38738271358194 19.193830622784766 20.869133198532356 24.549653465100935 34 30.6486535140035 21.98375726185338 24.544267095875245 22.82332212826788 35 30.018235694760126 22.82481046713287 24.092237320593153 23.06471651751385 36 30.87431403524812 23.461110768556928 21.241501407897694 24.423073788297263 37 31.057025349245805 24.186002669087696 19.657129249473236 25.099842732193267 38 32.361660674330906 22.855640343622007 20.757366037099327 24.025332944947763 39 32.86301825199561 21.734070698931017 19.620275144244843 25.782635904828528 40 29.76925786463062 21.864690152653957 21.023424327536606 27.34262765517882 41 28.55491509735508 21.805156598054246 22.28348035995121 27.356447944639463 42 27.830590183058597 19.370517708043195 22.590645152374005 30.208246956524203 43 26.477761028059437 18.74832118919693 25.803118282542 28.970799500201633 44 27.410453383454918 18.215283255691656 24.452982312155687 29.92128104869774 45 29.198373599986958 18.915086015355403 23.231339597113756 28.655200787543876 46 28.544851091696554 21.232642247987023 22.873004297046922 27.349502363269494 47 27.400318504517106 20.68996554849894 23.276415002739252 28.6333009442447 48 28.903469884880533 20.722921623366634 25.154840396918715 25.218768094834115 49 29.423467134997296 19.86677240959936 24.068707391870408 26.641053063532933 50 26.371947222086384 20.61675345099715 24.845265913000215 28.166033413916253 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 9.5 6 19.0 7 16.0 8 13.0 9 13.5 10 14.0 11 232.5 12 451.0 13 936.5 14 1422.0 15 2494.5 16 3567.0 17 3002.5 18 2438.0 19 2133.5 20 1829.0 21 2135.5 22 2442.0 23 2528.5 24 2615.0 25 3224.0 26 3833.0 27 4078.5 28 4324.0 29 4904.0 30 5484.0 31 6457.0 32 7430.0 33 8400.0 34 9370.0 35 12027.5 36 14685.0 37 14854.0 38 15023.0 39 16777.0 40 18531.0 41 21006.0 42 23481.0 43 25197.0 44 26913.0 45 27971.5 46 29030.0 47 33680.0 48 38330.0 49 41990.0 50 45650.0 51 49706.0 52 53762.0 53 59535.0 54 65308.0 55 72419.0 56 79530.0 57 105893.5 58 132257.0 59 134369.5 60 136482.0 61 145815.0 62 155148.0 63 154550.0 64 153952.0 65 136795.0 66 119638.0 67 100767.0 68 81896.0 69 69521.5 70 57147.0 71 48539.0 72 39931.0 73 34600.0 74 29269.0 75 29959.0 76 30649.0 77 21636.5 78 12624.0 79 8531.0 80 4438.0 81 3009.0 82 1580.0 83 949.5 84 319.0 85 195.0 86 71.0 87 65.0 88 59.0 89 36.0 90 13.0 91 6.5 92 0.0 93 1.0 94 2.0 95 1.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1410969.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 8.378762833795138 #Duplication Level Percentage of deduplicated Percentage of total 1 65.38459911868976 5.478420489982721 2 9.654732557512851 1.6178942864624113 3 3.8804568479313795 0.975402828467798 4 1.873590386369575 0.6279347798027708 5 1.1100073011503446 0.4650243960059877 6 0.71406519110619 0.3589789730488421 7 0.49484359662063904 0.2902323995134566 8 0.4040874592471569 0.27086023881142285 9 0.34158975367278804 0.2575889579230914 >10 9.786238143606555 23.869960593750942 >50 4.374742063754584 25.13301325099552 >100 1.8706088863608157 27.047390297424545 >500 0.06848911254410309 3.865767677838461 >1k 0.0376690118992567 6.276958851349596 >5k 0.002568341720403866 1.4565849934347916 >10k+ 0.001712227813602577 2.0079869851876353 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GCGAATGGGGAATCCGCAGCGGCTTCTGAGCAGATCAGACTCTCCTCGTT 16504 1.1696926013257556 No Hit GCGAATGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGC 11489 0.8142631057096222 No Hit GCGAATGGGGAGTCCCGCCCGGGAGCCGGCAGGGAGCGGAGCTGTGGAGC 7709 0.5463621100109215 No Hit GCGAATGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTG 7190 0.5095788780618142 No Hit GCGAATGGGGGCTTTGCAGACGCCACTGTCGCTTTTCGCCGCTTGCTGCA 5407 0.3832118210959986 No Hit GCGAATGGGAATCCGCAGCGGCTTCTGAGCAGATCAGACTCTCCTCGTTC 4987 0.35344504379614294 No Hit GCGAATGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGT 4849 0.34366453125476176 No Hit GCGAATGGGAGTCCCGCCCGGGAGCCGGCAGGGAGCGGAGCTGTGGAGCC 4832 0.3424596855069105 No Hit GCGAATGGGGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGC 4373 0.3099288503149254 No Hit GCGAATGGGGACAATCCGCAGCGGCTTCTGAGCAGATCAGACTCTCCTCG 4118 0.2918561640971559 No Hit GCGAATGGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACT 3676 0.26053017465302214 No Hit GCGAATGGGGGACAATCCGCAGCGGCTTCTGAGCAGATCAGACTCTCCTC 3427 0.24288272811096487 No Hit GCGAATGGGGGTCTCTTGCTGCAGCAACGAGAGTGGGAGCACCTGGAGCG 3327 0.23579540018242784 No Hit GCGAATGGGGGCTCTCTGCTCCTCCCTGTTCCAGAGACGGCCGCATCTTC 3077 0.21807708036108517 No Hit GCGAATGGGGAGTCCGAGTGGAGCGAGCGAGTCGAGCGGTTGTCTGGTCG 2723 0.192987939494064 No Hit GCGAATGGGGCTTTGCAGACGCCACTGTCGCTTTTCGCCGCTTGCTGCAG 2575 0.18249869415982917 No Hit GCGAATGGGGGTTTTTTCGGCTCCTCGGGTTTGTGTCTGCAGGTGCCATC 2498 0.17704145165485563 No Hit GCGAATGGGGCTCTCTGCTCCTCCCTGTTCCAGAGACGGCCGCATCTTCT 2278 0.1614493302120741 No Hit GCGAATGGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTCTGTG 2151 0.15244842374283205 No Hit GCGAATGGGGATAGTAGAGGCCACAGGAAGACCGTCGTGGAGAAGCCCCG 1948 0.13806114804790182 No Hit GCGAATGGGGGCGGCAGCACTCCAGTCCATAGCTTGCAGCAGCCAGGTTC 1894 0.13423399096649183 No Hit GCGAATGGGACAATCCGCAGCGGCTTCTGAGCAGATCAGACTCTCCTCGT 1607 0.11389335981159046 No Hit GCGAATGGGGAGTTGCTTCAGTGTCCTGGTGCGGAGCGTCACGTCTCGTG 1563 0.11077493552303418 No Hit GCGAATGGGATGCCACAACTAGATACATCAACATGATTTATCACAATTAT 1510 0.10701865172090953 No Hit GCGAATGGGGAGCCACCCCTGAGCATTGCCTTCTGAGCTGTTCTGTGGGA 1431 0.10141966265736525 No Hit GCGAATGGGGTTTTTTCGGCTCCTCGGGTTTGTGTCTGCAGGTGCCATCC 1417 0.10042743674737006 No Hit GCGAATGGGGACTGTCCCCATAGTAGAGGCCACAGGAAGACCGTCGTGGA 1417 0.10042743674737006 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.05584814407687199 0.0 0.0 0.0 0.0 8 0.06555778333896776 0.0 0.0 0.0 0.0 9 0.08667802056600818 0.0 0.0 0.0 0.0 10 0.11460209260444418 0.0 0.0 0.0 0.0 11 0.14833777354428057 0.0 0.0 0.0 0.0 12 0.16251242940135469 0.0 0.0 0.0 0.0 13 0.17392302736629933 0.0 0.0 0.0 0.0 14 0.18256956743911454 0.0 0.0 0.0 0.0 15 0.19178309374621272 0.0 0.0 0.0 0.0 16 0.20489465041400626 0.0 0.0 0.0 0.0 17 0.21736834756823148 0.0 0.0 0.0 0.0 18 0.22962942488460059 0.0 0.0 0.0 0.0 19 0.24096914957025986 0.0 0.0 0.0 0.0 20 0.2528758604902021 0.0 0.0 0.0 0.0 21 0.26584567059942493 0.0 0.0 0.0 0.0 22 0.27626404265437443 0.0 0.0 0.0 0.0 23 0.28824162685360205 0.0 0.0 0.0 0.0 24 0.30021921105282967 0.0 0.0 0.0 0.0 25 0.31177155557634506 0.0 0.0 0.0 0.0 26 0.32424525273057025 0.0 0.0 0.0 0.0 27 0.33608109037122713 0.0 0.0 0.0 0.0 28 0.3496887599940183 0.0 0.0 0.0 0.0 29 0.3612411045175337 0.0 0.0 0.0 0.0 30 0.3723682093653369 0.0 0.0 0.0 0.0 31 0.3834244409338547 0.0 0.0 0.0 0.0 32 0.39802433646664104 0.0 0.0 0.0 0.0 33 0.40773397572873676 0.0 0.0 0.0 0.0 34 0.41864846073868384 0.0 0.0 0.0 0.0 35 0.43416970890218 0.0 0.0 0.0 0.0 36 0.4459346732635515 0.0 0.0 0.0 0.0 37 0.4581957505799206 0.0 0.0 0.0 0.0 38 0.47130730724771414 0.0 0.0 0.0 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTCGTAC 20 7.8570907E-4 44.000004 16 CTCGTAA 20 7.8570907E-4 44.000004 16 CGACGTT 20 7.8570907E-4 44.000004 37 TTATAGG 20 7.8570907E-4 44.000004 29 AAACGTT 40 8.314601E-9 44.000004 27 GCCGATT 20 7.8570907E-4 44.000004 19 TACTCGA 20 7.8570907E-4 44.000004 44 CGTGTAA 20 7.8570907E-4 44.000004 42 ATAACTA 20 7.8570907E-4 44.000004 37 AATAGAC 20 7.8570907E-4 44.000004 11 GATACGC 25 4.4433575E-5 44.0 41 CGCGAAC 30 2.5281279E-6 44.0 37 AGTATTC 25 4.4433575E-5 44.0 18 TTATATG 25 4.4433575E-5 44.0 44 ATATCGT 30 2.5281279E-6 44.0 35 ATAAACG 30 2.5281279E-6 44.0 40 ATCGGAT 25 4.4433575E-5 44.0 32 AATGGGA 34015 0.0 41.956196 4 ATGGGAG 13300 0.0 41.915787 5 GCGAATG 148110 0.0 41.807575 1 >>END_MODULE