##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1527737_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 884268 Sequences flagged as poor quality 0 Sequence length 52 %GC 61 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.00071471544826 31.0 31.0 34.0 30.0 34.0 2 31.868090895520364 31.0 31.0 34.0 30.0 34.0 3 32.46683245350957 34.0 31.0 34.0 31.0 34.0 4 36.27350757915021 37.0 35.0 37.0 35.0 37.0 5 36.34180700873491 37.0 37.0 37.0 35.0 37.0 6 35.973431131738344 37.0 35.0 37.0 35.0 37.0 7 36.450339716013694 37.0 37.0 37.0 35.0 37.0 8 36.524229079871716 37.0 37.0 37.0 35.0 37.0 9 38.51705026078067 39.0 39.0 39.0 37.0 39.0 10 37.632558228953215 39.0 37.0 39.0 35.0 39.0 11 36.33696571627606 38.0 35.0 39.0 33.0 39.0 12 36.08091777605884 38.0 35.0 39.0 32.0 39.0 13 35.96211895036346 38.0 35.0 39.0 31.0 39.0 14 36.500530382191826 39.0 35.0 40.0 31.0 40.0 15 36.774912130711506 39.0 35.0 40.0 32.0 40.0 16 36.66178692432611 39.0 35.0 40.0 31.0 40.0 17 36.74680074366595 39.0 35.0 40.0 32.0 40.0 18 36.76734202753011 39.0 35.0 40.0 32.0 40.0 19 36.20597149280535 38.0 35.0 40.0 30.0 40.0 20 36.33659591888432 38.0 35.0 40.0 30.0 40.0 21 36.36363862539411 38.0 35.0 40.0 31.0 40.0 22 36.394637146204545 38.0 35.0 40.0 31.0 40.0 23 36.38604359764234 38.0 35.0 40.0 31.0 40.0 24 36.326213319943726 38.0 35.0 40.0 31.0 40.0 25 36.19698326751618 38.0 35.0 40.0 31.0 40.0 26 35.925740838750244 38.0 35.0 40.0 30.0 40.0 27 35.77968783219567 38.0 35.0 40.0 30.0 40.0 28 35.60314746208163 37.0 34.0 40.0 30.0 40.0 29 35.49482057475788 37.0 34.0 40.0 30.0 40.0 30 35.14812364577255 36.0 34.0 40.0 29.0 40.0 31 34.91331134904802 36.0 34.0 40.0 28.0 40.0 32 34.35041412784359 35.0 33.0 39.0 26.0 40.0 33 34.525959324548666 35.0 33.0 39.0 27.0 40.0 34 34.080199667973964 35.0 33.0 39.0 24.0 40.0 35 34.100346275111164 35.0 33.0 39.0 26.0 40.0 36 33.96512821904671 35.0 33.0 39.0 25.0 40.0 37 33.48074113277875 35.0 33.0 39.0 23.0 40.0 38 33.45536986524447 35.0 33.0 38.0 23.0 40.0 39 33.24532381585673 35.0 32.0 38.0 23.0 40.0 40 32.825601514472986 35.0 32.0 38.0 22.0 40.0 41 32.53688135271207 35.0 31.0 38.0 21.0 40.0 42 32.47262820773793 35.0 31.0 37.0 22.0 40.0 43 32.34595620332298 35.0 31.0 37.0 21.0 40.0 44 32.26717578833566 35.0 31.0 37.0 21.0 40.0 45 32.16813454744489 35.0 31.0 36.0 22.0 40.0 46 31.985714738065834 35.0 31.0 36.0 20.0 40.0 47 31.838619061189593 34.0 31.0 36.0 20.0 39.0 48 31.62322734736528 34.0 30.0 36.0 20.0 39.0 49 32.08274640719782 35.0 31.0 36.0 22.0 39.0 50 32.059998778650815 35.0 31.0 35.0 21.0 39.0 51 32.09105384340494 35.0 31.0 35.0 21.0 39.0 52 31.658868125952765 35.0 31.0 35.0 20.0 39.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 1.0 13 0.0 14 5.0 15 19.0 16 59.0 17 169.0 18 336.0 19 708.0 20 1278.0 21 2137.0 22 3783.0 23 5565.0 24 8037.0 25 11078.0 26 14006.0 27 17862.0 28 20652.0 29 24324.0 30 29184.0 31 35446.0 32 43553.0 33 60937.0 34 111614.0 35 97984.0 36 115265.0 37 125167.0 38 126399.0 39 28699.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 100.0 0.0 0.0 0.0 2 0.0 0.0 100.0 0.0 3 0.0 0.0 0.0 100.0 4 0.0 0.0 0.0 100.0 5 0.0 0.0 0.0 100.0 6 100.0 0.0 0.0 0.0 7 99.33764424360035 0.5630645912777574 0.06706111721785703 0.0322300479040291 8 99.14822203223457 0.5505118357782934 0.1526686479664536 0.14859748402068151 9 95.9269135601424 2.253728507647003 1.1459195628474625 0.6734383693631343 10 53.891919644270736 33.370765424056955 4.58232119674126 8.15499373493104 11 38.375809143834225 27.79236611525013 16.865362084797823 16.966462656117827 12 38.51140152080591 14.93348170464158 22.92936078202536 23.625755992527154 13 25.055299976930073 14.086792691808366 24.640041254461316 36.21786607680025 14 22.460611488824654 23.62654760773883 28.481976052508966 25.43086485092755 15 31.471567443354274 17.437586794953567 25.850307825229457 25.240537936462704 16 31.81693785142061 17.991717443128103 26.94545092664215 23.24589377880914 17 37.86058072891929 18.82008621820534 19.901432597357363 23.41790045551801 18 38.31033125703972 17.725395468342175 20.484739920476596 23.479533354141505 19 31.33122537511252 20.064618418850394 25.25772729534485 23.346428910692232 20 31.48106682589441 27.398820267158825 20.180081151867984 20.940031755078778 21 30.067015882062904 19.126215129349923 28.789575106189524 22.017193882397645 22 28.522122252529776 18.376329348116183 23.995553384268117 29.105995015085924 23 27.789425830178182 24.155007305477525 22.805416457454076 25.25015040689022 24 27.99501960943967 27.118249218562696 20.22237602174906 24.664355150248568 25 28.300922344809493 21.21166886057168 19.509922331238947 30.977486463379883 26 31.493958845056024 21.333803778944844 20.52239818697499 26.649839189024142 27 26.454310231739697 19.641782807927008 21.86723934372837 32.036667616604916 28 26.327651797871233 26.60686579181877 19.863548155084203 27.20193425522579 29 34.19562847462534 21.362528102340015 19.5847865126862 24.857056910348447 30 29.820823551231072 24.36749944586935 21.257469454961615 24.554207547937956 31 34.48988315759476 19.43064772218377 22.388687592449347 23.690781527772124 32 32.04922037210439 20.425255691713375 24.88996548557677 22.635558450605473 33 37.67941393333243 18.94923258559622 20.767572726820376 22.603780754250973 34 28.98159833896511 20.879982086878638 24.015796116109595 26.122623458046657 35 28.475982394477693 29.689528513979923 20.77447108795071 21.060018003591672 36 33.79348794709296 23.544785065161243 19.90098024580783 22.760746741937965 37 30.207244862417276 23.120592399589267 23.038151329687377 23.63401140830608 38 34.28609878453139 22.54226094351486 20.162213265661542 23.00942700629221 39 30.339444602767486 20.139482600297647 20.475919065260758 29.045153731674105 40 30.349848688406684 20.254492981765708 23.755920150904476 25.639738178923132 41 29.720853858784896 21.829241813567833 22.099521864412146 26.35038246323513 42 25.7495465175716 20.64837809351916 26.435650730321576 27.16642465858767 43 26.19149398146263 19.573025372398416 25.624471314126485 28.611009332012465 44 27.460679341557086 19.254909145191277 23.388836868460693 29.895574644790944 45 27.708907254361797 19.36686615370001 22.32897718791136 30.59524940402683 46 29.7246988469559 21.813748772996423 22.47056322291432 25.99098915713336 47 30.75164995227691 19.924954877932937 24.449035812672175 24.874359357117978 48 31.54247354874314 22.040376899311067 22.778614628144407 23.638534923801384 49 32.89918893367169 20.840966765731654 21.66198482812903 24.597859472467622 50 26.20777863724572 23.00999244572912 22.551081798730703 28.23114711829445 51 25.985900202201144 25.128015488517057 22.843866339164144 26.042217970117658 52 28.650363916821597 24.17468459788209 21.943008228274685 25.231943257021626 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 2.5 10 5.0 11 10.5 12 16.0 13 30.5 14 212.5 15 380.0 16 709.5 17 1039.0 18 1304.5 19 1570.0 20 1421.5 21 1273.0 22 1104.5 23 936.0 24 866.0 25 796.0 26 911.5 27 1027.0 28 1397.5 29 1768.0 30 2011.0 31 2254.0 32 2663.5 33 3073.0 34 3390.0 35 3707.0 36 4551.0 37 5395.0 38 6525.0 39 9066.5 40 10478.0 41 10683.0 42 10888.0 43 12500.0 44 14112.0 45 14888.5 46 15665.0 47 16165.5 48 16666.0 49 21345.0 50 26024.0 51 26144.0 52 26264.0 53 27884.0 54 29504.0 55 33729.0 56 37954.0 57 42442.5 58 46931.0 59 50497.0 60 54063.0 61 66985.5 62 79908.0 63 84639.0 64 91620.5 65 93871.0 66 88370.0 67 82869.0 68 74296.5 69 65724.0 70 57769.0 71 49814.0 72 42367.5 73 34921.0 74 30049.0 75 25177.0 76 21588.5 77 18000.0 78 15351.0 79 12702.0 80 10328.0 81 7954.0 82 5269.0 83 2584.0 84 1964.5 85 1345.0 86 868.0 87 391.0 88 252.5 89 71.5 90 29.0 91 16.5 92 4.0 93 3.0 94 2.0 95 1.5 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 52 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 52 884268.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 11.360648341537894 #Duplication Level Percentage of deduplicated Percentage of total 1 70.1335312679245 7.967623856851426 2 10.494001222925704 2.3843731517865505 3 4.564353217749631 1.555620354402615 4 2.2294263443350495 1.013109148054035 5 1.2236781259379164 0.6950888436006394 6 0.7737962425006244 0.5274496199431784 7 0.526861258485356 0.418983983770256 8 0.3898973257424286 0.3543589125652626 9 0.28692444226722696 0.29336829202708714 >10 4.283871899347964 13.124227493936191 >50 3.158168338399098 25.74156273571803 >100 1.862509532902032 35.751066249578166 >500 0.04798736316655799 3.6870363391630723 >1k 0.02299394485064237 4.544766630059154 >5k 9.997367326366247E-4 0.6977008973748191 >10k+ 9.997367326366247E-4 1.243663491169505 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GTCCCGGGGGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAA 10950 1.2383123668390126 No Hit GTCCCGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTC 6143 0.6946988921910552 No Hit GTCCCGGGGAAGCAGTGGTATCAACGCAGAGTGCAGTGCTGTCCCGGGGAAG 4446 0.5027887473028539 No Hit GTCCCGGGGGAGTCCGAGTGGAGCGAGCGAGTCGAGCGGTTGTCTGGTCGCG 2840 0.32116960016646534 No Hit GTCCCGGGGGGCTTTGCAGACGCCACTGTCGCTTTTCGCCGCTTGCTGCAGC 2495 0.28215427901948276 No Hit GTCCCGGGGAGTCCGAGTGGAGCGAGCGAGTCGAGCGGTTGTCTGGTCGCGT 2432 0.2750297421143816 No Hit GTCCCGGGGAAGCAGTGGTATCAACGCAGAGTGCAGTGCTGTCCCGGGGCAG 2408 0.2723156328172002 No Hit GTCCCGGGGAGCCACCCCTGAGCATTGCCTTCTGAGCTGTTCTGTGGGACCT 2192 0.2478886491425676 No Hit GTCCCGGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCT 2025 0.2290029719496804 No Hit GTCCCGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGATTGCTC 1659 0.1876128051676641 No Hit GTCCCGGGGGAGCCACCCCTGAGCATTGCCTTCTGAGCTGTTCTGTGGGACC 1659 0.1876128051676641 No Hit GTCCCGGGGAGTCCCGCCCGGGAGCCGGCAGGGAGCGGAGCTGTGGAGCCTC 1593 0.18014900460041525 No Hit GTCCCGGGGGCTTTGCAGACGCCACTGTCGCTTTTCGCCGCTTGCTGCAGCC 1523 0.17223285248363618 No Hit GTCCCGGGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTCTGTGAG 1519 0.17178050093410596 No Hit GTCCCGGGGGAATCCGCAGCGGCTTCTGAGCAGATCAGACTCTCCTCGTTCG 1442 0.16307273360564897 No Hit GTCCCGGGGAAGCAGTGGTATCAACGCAGATCGGAAGAGCTCGTATGCCGTC 1436 0.16239420628135362 Illumina Single End Adapter 2 (100% over 25bp) GTCCCGGGGAATCCGCAGCGGCTTCTGAGCAGATCAGACTCTCCTCGTTCGC 1381 0.15617437247531293 No Hit GTCCCGGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTCTGTGAGG 1298 0.1467880778225606 No Hit GTCCCGGGGGAGTCCCGCCCGGGAGCCGGCAGGGAGCGGAGCTGTGGAGCCT 1204 0.1361578164086001 No Hit GTCCCGGGGGCTCTTTCTAAGCCGGCGATCCGTCAGGGTGAAGCCATGTTCA 1194 0.13502693753477452 No Hit GTCCCGGGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGC 1107 0.12518829133249196 No Hit GTCCCGGGGATGCCACAACTAGATACATCAACATGATTTATCACAATTATCT 1106 0.12507520344510942 No Hit GTCCCGGGGGCGAACGGCGAGCAGCGGCGGCGGCGCGGGAAGTGCAGCGGAG 1046 0.1182899302021559 No Hit GTCCCGGGGGGGGTTGGGGATTTAGCTCAGTGGTAAAGTGCTTGCCTAGCAA 1007 0.11387950259423613 No Hit GTCCCGGGGAAGCAGATCGGAAGAGCTCGTATGCCGTCTTCTGCTTGAAAAA 1003 0.11342715104470591 Illumina Single End Adapter 2 (100% over 34bp) GTCCCGGGGGGTCTCTTGCTGCAGCAACGAGAGTGGGAGCACCTGGAGCGCG 974 0.11014760231061171 No Hit GTCCCGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCAACTGCTC 927 0.10483247160363149 No Hit GTCCCGGGGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAG 925 0.10460629582886637 No Hit GTCCCGGGGGGGCTGGAGAGATGGCTCAGTGGTTAAGGACACCTACTGCTCT 915 0.10347541695504077 No Hit GTCCCGGGGAAGCAGTGGTATCAACGCAGAGTGCAGTGCTGTCCCGGGGGAG 885 0.10008278033356403 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.01277893127422908 0.0 0.0 0.0 0.0 8 0.01334437071114187 0.0 0.0 0.0 0.0 9 0.01990346817933025 0.0 0.0 0.0 0.0 10 0.05168116453382911 0.0 0.0 0.0 0.0 11 0.15719216346175593 0.0 0.0 0.0 0.0 12 0.23737147561598973 0.0 0.0 0.0 0.0 13 0.26191154717800486 0.0 0.0 0.0 0.0 14 0.4309779388149294 0.0 0.0 0.0 0.0 15 0.47474295123197946 0.0 0.0 0.0 0.0 16 0.5394292228148028 0.0 0.0 0.0 0.0 17 0.599026539465411 0.0 0.0 0.0 0.0 18 0.6248105777886342 0.0 0.0 0.0 0.0 19 0.6624688442870261 0.0 0.0 0.0 0.0 20 0.7012579896592436 0.0 0.0 0.0 0.0 21 0.7238755671357552 0.0 0.0 0.0 0.0 22 0.7440052110898506 0.0 0.0 0.0 0.0 23 0.7743127649083762 0.0 0.0 0.0 0.0 24 0.8161552832399227 0.0 0.0 0.0 0.0 25 0.8438618156486495 0.0 0.0 0.0 0.0 26 0.9512953086620798 0.0 0.0 0.0 0.0 27 0.9989053092501369 0.0 0.0 0.0 0.0 28 1.2016718913270636 0.0 0.0 0.0 0.0 29 1.2290391600736428 0.0 0.0 0.0 0.0 30 1.3173608001194208 0.0 0.0 0.0 0.0 31 1.3369250046366035 0.0 0.0 0.0 0.0 32 1.3893977843821104 0.0 0.0 0.0 0.0 33 1.4252466446823813 0.0 0.0 0.0 0.0 34 1.4599646261088268 0.0 0.0 0.0 0.0 35 1.625525293236892 0.0 0.0 0.0 0.0 36 1.6501784526862897 0.0 0.0 0.0 0.0 37 1.6932649377790443 0.0 0.0 0.0 0.0 38 1.7231201400480398 0.0 0.0 0.0 0.0 39 1.7412142020292491 0.0 0.0 0.0 0.0 40 1.7572726820375724 0.0 0.0 0.0 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTCATAA 25 3.4165125E-5 46.0 12 AACGTCC 20 6.310661E-4 46.0 37 AGACTAC 20 6.310661E-4 46.0 45 CCCCTAG 20 6.310661E-4 46.0 35 ACACGTC 20 6.310661E-4 46.0 20 AAATCGT 20 6.310661E-4 46.0 21 CGAACAA 45 3.092282E-10 46.0 31 GTACATG 25 3.4165125E-5 46.0 21 CGTATCG 30 1.8609135E-6 46.0 26 CACGGGT 20 6.310661E-4 46.0 30 GCGAATC 30 1.8609135E-6 46.0 29 TCCGATA 55 1.8189894E-12 46.0 21 CCGATAG 55 1.8189894E-12 46.0 22 ACGCAAT 20 6.310661E-4 46.0 24 CTATACT 20 6.310661E-4 46.0 28 GGCAATA 20 6.310661E-4 46.0 38 ATTACGA 20 6.310661E-4 46.0 31 ATAGCTA 30 1.8609135E-6 46.0 24 CCGTGTA 25 3.4165125E-5 46.0 12 AAGACGT 20 6.310661E-4 46.0 43 >>END_MODULE