##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1527720_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 235671 Sequences flagged as poor quality 0 Sequence length 50 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.37597328479109 34.0 31.0 34.0 30.0 34.0 2 32.49833878584977 34.0 31.0 34.0 30.0 34.0 3 32.573405298063825 34.0 31.0 34.0 30.0 34.0 4 36.22962519783936 37.0 37.0 37.0 35.0 37.0 5 36.29184329001023 37.0 37.0 37.0 35.0 37.0 6 36.27432310296982 37.0 37.0 37.0 35.0 37.0 7 36.55260935796088 37.0 37.0 37.0 35.0 37.0 8 36.648162056426116 37.0 37.0 37.0 35.0 37.0 9 38.63012419856495 39.0 39.0 39.0 38.0 39.0 10 38.059239363349754 39.0 38.0 39.0 37.0 39.0 11 37.83057737269329 39.0 38.0 39.0 35.0 39.0 12 37.63630230278651 39.0 37.0 39.0 35.0 39.0 13 37.40329102859495 39.0 37.0 39.0 35.0 39.0 14 38.170928964531065 40.0 38.0 40.0 34.0 40.0 15 38.20433570528406 40.0 38.0 40.0 34.0 40.0 16 38.254095752129025 40.0 38.0 40.0 35.0 40.0 17 38.35997216458537 40.0 38.0 40.0 35.0 40.0 18 38.24602093596582 40.0 38.0 40.0 35.0 40.0 19 38.23029986718773 40.0 38.0 40.0 34.0 40.0 20 38.316046522482615 40.0 38.0 40.0 35.0 40.0 21 38.32955263906039 40.0 38.0 40.0 35.0 40.0 22 38.37885017672942 40.0 38.0 40.0 35.0 40.0 23 38.25578454710168 40.0 38.0 40.0 35.0 40.0 24 38.11565275320256 40.0 38.0 40.0 35.0 40.0 25 37.93186263901795 40.0 37.0 40.0 34.0 40.0 26 37.655549473630614 40.0 37.0 40.0 34.0 40.0 27 37.50964692304102 40.0 36.0 40.0 34.0 40.0 28 37.412927343627345 40.0 36.0 40.0 33.0 40.0 29 37.351299056735876 40.0 36.0 40.0 33.0 40.0 30 37.354638457850136 40.0 36.0 40.0 33.0 40.0 31 37.29770739717657 40.0 36.0 40.0 33.0 40.0 32 37.201726135163 40.0 36.0 40.0 33.0 40.0 33 37.06612183934383 40.0 36.0 40.0 33.0 40.0 34 36.682553220379255 40.0 35.0 40.0 31.0 40.0 35 36.56610274492831 40.0 35.0 40.0 31.0 40.0 36 36.33608292916821 40.0 35.0 40.0 30.0 40.0 37 35.960385452601294 40.0 35.0 40.0 27.0 40.0 38 35.72114091254333 40.0 35.0 40.0 25.0 40.0 39 35.40772093299557 40.0 35.0 40.0 23.0 40.0 40 35.01667578955408 39.0 35.0 40.0 21.0 40.0 41 34.726584942568245 39.0 35.0 40.0 20.0 40.0 42 34.43570061653746 38.0 35.0 40.0 18.0 40.0 43 34.17410712391427 38.0 35.0 40.0 17.0 40.0 44 33.769335217315664 37.0 34.0 40.0 15.0 40.0 45 33.583546554306636 37.0 34.0 40.0 14.0 40.0 46 33.38145974685048 37.0 34.0 40.0 12.0 40.0 47 33.19999915135931 36.0 33.0 40.0 12.0 40.0 48 32.98190273729055 36.0 33.0 40.0 11.0 40.0 49 32.7199400859673 35.0 33.0 40.0 10.0 40.0 50 31.98432560645985 35.0 31.0 40.0 10.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 14 5.0 15 7.0 16 15.0 17 32.0 18 67.0 19 115.0 20 216.0 21 325.0 22 475.0 23 774.0 24 1297.0 25 1931.0 26 2664.0 27 3612.0 28 4990.0 29 5805.0 30 5654.0 31 5242.0 32 5551.0 33 6903.0 34 10134.0 35 13739.0 36 20843.0 37 35080.0 38 67653.0 39 42542.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 0.0 0.0 100.0 0.0 2 100.0 0.0 0.0 0.0 3 0.0 100.0 0.0 0.0 4 0.0 0.0 100.0 0.0 5 0.0 0.0 0.0 100.0 6 0.0 100.0 0.0 0.0 7 99.24683138782456 0.5881079980141808 0.1306906662253735 0.03436994793589368 8 97.14771864166572 2.163609438581752 0.45996325385813275 0.22870866589440364 9 94.55299973267817 3.468818819455936 1.186824004650551 0.7913574432153299 10 47.6248668694918 36.88574326073212 5.478824293188386 10.0105655765877 11 28.7816489937243 37.278239579753134 17.944931705640492 15.995179720882078 12 37.367771172524414 24.834196825235182 20.99664362607194 16.80138837616847 13 24.488375744151806 28.46468169609328 24.55244811622983 22.494494443525085 14 27.828625499106806 31.764196697939077 20.602025705326493 19.805152097627627 15 25.5678467015458 32.61920219288754 20.876985288813643 20.935965816753015 16 26.778008325165164 31.702245927585487 25.03447602802212 16.485269719227226 17 30.623199290536384 29.575552359008956 20.790423938456577 19.01082441199808 18 28.204997645022083 30.400006789125516 23.32107047536608 18.073925090486316 19 25.952280934013945 29.24118792723755 24.964463171115668 19.842067967632847 20 25.93148923711445 28.985747079615226 23.977494048907165 21.105269634363157 21 22.69647092769157 27.82098773289883 29.062549062039878 20.419992277369722 22 22.713019421142185 32.29926465284231 23.62191359989137 21.365802326124133 23 21.778241701354855 36.161852752353916 23.217536311213514 18.84236923507771 24 21.498190273729055 34.99412316322331 24.31610168412745 19.19158487892019 25 22.443151681793687 31.44213755616941 22.935787602208162 23.17892315982874 26 25.673502467422804 32.61877787254265 20.225653559411214 21.482066100623324 27 23.820071200953873 33.40334619023979 21.036954058836262 21.739628549970085 28 29.62986536315457 31.797718005185192 19.225954826856086 19.346461804804154 29 31.070432934047886 32.7061878635895 18.941660195781406 17.28171900658121 30 29.348540974494103 34.878283709068995 19.112236974426214 16.660938342010684 31 28.198208519503886 34.06486160791952 18.71210288919723 19.024826983379374 32 24.57154253174977 37.047833632479175 20.502310424277916 17.878313411493142 33 27.177293769704374 37.28715030699577 18.81139384990092 16.724162073398933 34 24.254150913773863 38.363651021975556 17.476057724539718 19.906140339710866 35 23.523895600222346 42.80161750915471 18.188915903950846 15.485570986672098 36 24.14043306134399 40.21920389016892 18.423565054673677 17.216797993813408 37 22.62476078940557 41.62327991140191 18.666276291949373 17.085683007243148 38 24.646647232794873 40.748755680588616 18.18170245808776 16.422894628528752 39 22.914147264618897 38.57920575717844 17.924140008741 20.582506969461665 40 22.890385325305193 40.58327074608246 19.525524990346714 17.00081893826563 41 22.32688790729449 40.8552600871554 20.169218953541165 16.648633052008947 42 22.660403698376125 40.693169715408345 18.913655053018825 17.732771533196704 43 21.708228844448403 41.130219670642546 20.039376928005566 17.12217455690348 44 21.958153527587186 39.08499560828443 21.17443385057983 17.78241701354855 45 19.783936080383246 39.86574504287757 19.284935354795458 21.065383521943726 46 20.89141218053982 41.24563480445197 19.323548506180227 18.539404508827985 47 22.921360710481984 39.33322301004366 19.58026231483721 18.165153964637142 48 23.34652969605934 38.54101692613855 19.272630064793717 18.839823313008388 49 22.86450178426705 39.34467965935563 19.82467083349245 17.96614772288487 50 20.44672445909764 41.64025272519741 20.007128581794113 17.905894233910832 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 9.5 4 19.0 5 39.5 6 60.0 7 86.5 8 113.0 9 680.0 10 1247.0 11 1722.0 12 2197.0 13 2017.5 14 1838.0 15 1574.0 16 1310.0 17 1247.5 18 1185.0 19 1203.5 20 1222.0 21 1559.0 22 1896.0 23 2440.5 24 2985.0 25 3813.5 26 4642.0 27 5023.5 28 5405.0 29 6512.5 30 7620.0 31 8962.0 32 10304.0 33 10683.5 34 11063.0 35 11148.0 36 11233.0 37 10438.0 38 9643.0 39 9457.0 40 9271.0 41 9229.0 42 9187.0 43 9428.0 44 9669.0 45 9551.0 46 9433.0 47 10728.0 48 12023.0 49 12125.0 50 12227.0 51 15372.0 52 18517.0 53 18495.0 54 18473.0 55 16696.0 56 14919.0 57 13706.0 58 12493.0 59 11479.0 60 10465.0 61 8954.0 62 7443.0 63 6734.0 64 6025.0 65 5338.0 66 4651.0 67 3398.0 68 2145.0 69 2261.5 70 2378.0 71 1892.5 72 1407.0 73 1001.0 74 595.0 75 399.5 76 204.0 77 122.5 78 41.0 79 61.0 80 81.0 81 57.0 82 33.0 83 20.5 84 8.0 85 4.0 86 0.0 87 0.5 88 1.0 89 0.5 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 235671.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 28.94798256892023 #Duplication Level Percentage of deduplicated Percentage of total 1 77.35334642783853 22.39223324040718 2 9.253613203951804 5.357468674550539 3 3.7568526281844568 3.2625991318405747 4 1.9421887367711295 2.2488978279041545 5 1.1198733546363342 1.6209037174705416 6 0.7988625370115212 1.3875275277823746 7 0.6112397760253291 1.2385910867268353 8 0.4397408460613878 1.0183688277301832 9 0.34592946556829174 0.901256412541212 >10 3.1763947113834248 21.96918585655426 >50 0.831110199056023 16.436897199910046 >100 0.3532584796693149 17.232073526229364 >500 0.01172642256163701 2.4631796020723806 >1k 0.005863211280818505 2.470817368280357 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source TGATCAGGGAAGCAGTGGTATCAACGCAGAGTGCAGTGCTTGATCAGGGA 2048 0.8690080663297564 No Hit TGATCAGGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1432 0.6076267338790093 No Hit TGATCAGGGGAGTGCAGTGCTTAATCAGGGAAAAAAAAAAAAAAAAAAAA 1184 0.5023952883468904 No Hit TGATCAGGGGAAGGCAGTTTTAACTTTTTCAAAGATTGCAAACTTCTTGT 1159 0.491787279724701 No Hit TGATCAGGGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 928 0.3937692800556708 No Hit TGATCAGGGAGTGCAGTGCTTAATCAGGGAAAAAAAAAAAAAAAAAAAAA 898 0.38103966970904357 No Hit TGATCAGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 853 0.3619452541891026 No Hit TGATCAGGGGAGGCATTCAGGCAGCGAGAGCAGAGCAGCGTAGAGCAGCA 716 0.30381336693950467 No Hit TGATCAGGGGAGTGCAGTGCTTGATCAGGGAAAAAAAAAAAAAAAAAAAA 689 0.29235671762754006 No Hit TGATCAGGGGAGTGCAGTGCTTAATCAGGGGAAAAAAAAAAAAAAAAAAA 625 0.2652002155547352 No Hit TGATCAGATCGGAAGAGCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAAA 586 0.24865172210411973 Illumina Single End Adapter 2 (100% over 34bp) TGATCAGGGGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 510 0.2164033758926639 No Hit TGATCAGGATCGGAAGAGCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAA 494 0.2096142503744627 Illumina Single End Adapter 2 (97% over 34bp) TGATCAGGGCAGAGTGCAGTGCTTAATCAGGGAAAAAAAAAAAAAAAAAA 485 0.2057953672704745 No Hit TGATCAGGGGCCCGTCTGCCCCAGCCCAGACACCGAAGCTACTCTCCTTC 483 0.20494672658069937 No Hit TGATCAGGGGGGCTGGAGAGATGGCTCAGCCGTTAAAGGCTAGGCTCACA 475 0.20155216382159877 No Hit TGATCAGGGGTGCAGTGCTTAATCAGGGAAAAAAAAAAAAAAAAAAAAAA 472 0.20027920278693603 No Hit TGATCAGGGAGTGCAGTGCTTAATCAGGGGAAAAAAAAAAAAAAAAAAAA 448 0.1900955145096342 No Hit TGATCAGGGAGATCGGAAGAGCTCGTATGCCGTCTTCTGCTTGAAAAAAA 415 0.17609294312834417 Illumina Single End Adapter 2 (100% over 34bp) TGATCAGGGGAGTCCAGAGCCTGCAACCTACTTCCTTCTAGCTGCAGCCA 361 0.15317964450441507 No Hit TGATCAGGGGAGATCGGAAGAGCTCGTATGCCGTCTTCTGCTTGAAAAAA 343 0.1455418782964387 Illumina Single End Adapter 2 (100% over 34bp) TGATCAGGGAGCCGACTTAGAACTGGTGCGGACCAGGGGAATCCGACTGT 342 0.1451175579515511 No Hit TGATCAGGGGAGTGCAGTGCTTAATCAGGGGGAAAAAAAAAAAAAAAAAA 340 0.14426891726177596 No Hit TGATCAGGGGGCGCCAGTCCTCCGATAGACTGAGTCGCCCGGGTACCCGT 337 0.14299595622711322 No Hit TGATCAGGGGATCGGAAGAGCTCGTATGCCGTCTTCTGCTTGAAAAAAAA 336 0.14257163588222566 Illumina Single End Adapter 2 (97% over 34bp) TGATCAGAAGAGCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAAAAAAAA 335 0.1421473155373381 Illumina Single End Adapter 1 (96% over 33bp) TGATCAGGGACTAATCCTAGCCCTAGCCCTACACAAATATAATTATACTA 331 0.14045003415778776 No Hit TGATCAGGGAGTGCAGTGCTTGATCAGGGAAAAAAAAAAAAAAAAAAAAA 324 0.13747979174357472 No Hit TGATCAGGGGACACCACCCACCCAGAGTGGAGAAGCCCAGCCAGTCGCTG 321 0.136206830708912 No Hit TGATCAGGGAGAGTGCAGTGCTTAATCAGGGAAAAAAAAAAAAAAAAAAA 314 0.13323658829469898 No Hit TGATCAGGGAGTGCAGTGCTTGATCAGGGATTGCCACTTCTTCCCCTGTT 311 0.13196362726003624 No Hit TGATCAGGGGATCGAGCATCGGTCGGAGCTGCTGCCAGCCAACTCTCGAA 310 0.13153930691514867 No Hit TGATCAGGGATTAAGAGCCTTGTCTGTTTAGTGCTGTGGATGGCTCCCAG 303 0.1285690645009356 No Hit TGATCAGGGATTAGTTTGTGACTCTCTTGAGGGCAAGGGTGAGGTAGGGT 300 0.1272961034662729 No Hit TGATCAGGGGCAGTGCATCGTGGGTGAGAACGAGCGGAGCAGGTTTGGCG 294 0.12475018139694743 No Hit TGATCAGGGGTGCAGTGCTTAATCAGGGGAAAAAAAAAAAAAAAAAAAAA 282 0.11965833725829653 No Hit TGATCAGGGGAGTGCAGTGCTTGATCGGAAGAGCTCGTATGCCGTCTTCT 281 0.11923401691340894 Illumina Single End Adapter 2 (96% over 29bp) TGATCAGGGCAGTGCTTAATCAGGGAAAAAAAAAAAAAAAAAAAAAAAAA 275 0.11668809484408349 No Hit TGATCAGGGCAGAGTGCAGTGCTTAATCAGGGGAAAAAAAAAAAAAAAAA 271 0.11499081346453319 No Hit TGATCAGGGGCCGGTAGTGGTGGCGCACGCCGGTAGGATTTGCTGAAGGA 269 0.11414217277475804 No Hit TGATCAGGGGGTACAGTGAAACTGCAAATGGCTGAGGACATTCTGTATCC 269 0.11414217277475804 No Hit TGATCAGGGAGCAGACCGTAACCATTATAGACGCTATCCACGTCGTAGGG 266 0.1128692117400953 No Hit TGATCAGGGGCCGCCGGTAGTGGTGGCGCACGCCGGTAGGATTTGCTGAA 260 0.11032328967076985 No Hit TGATCAGGGGGCCCGTCCGCCCCAGCCCAGACACCGAAGCTACTCTCCTT 258 0.1094746489809947 No Hit TGATCAGGGAGAGTGCAGTGCTTGATCAGGGAAGTAATTTACACCGGAAA 245 0.10395848449745619 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.4569930114439197 0.0 0.0 0.0 0.0 7 0.5354922752481214 0.0 0.0 0.0 0.0 8 0.5982916862914827 0.0 0.0 0.0 0.0 9 0.6933394435462997 0.0 0.0 0.0 0.0 10 0.9258669925446915 0.0 0.0 0.0 0.0 11 1.2933284112173327 0.0 0.0 0.0 0.0 12 1.4269893198569192 0.0 0.0 0.0 0.0 13 1.517369553317973 0.0 0.0 0.0 0.0 14 1.6684275960979502 0.0 0.0 0.0 0.0 15 1.8513096647444955 0.0 0.0 0.0 0.0 16 1.990911058212508 0.0 0.0 0.0 0.0 17 2.091899300295751 0.0 0.0 0.0 0.0 18 2.1996766678971955 0.0 0.0 0.0 0.0 19 2.3108485982577407 0.0 0.0 0.0 0.0 20 2.425839411722274 0.0 0.0 0.0 0.0 21 2.5306465369095053 0.0 0.0 0.0 0.0 22 2.649031913133139 0.0 0.0 0.0 0.0 23 2.8017872372926664 0.0 0.0 0.0 0.0 24 2.957512803866407 0.0 0.0 0.0 0.0 25 3.1094194873361594 0.0 0.0 0.0 0.0 26 3.3037582052946695 0.0 0.0 0.0 0.0 27 3.501067165667392 0.0 0.0 0.0 0.0 28 3.690314039487251 0.0 0.0 0.0 0.0 29 3.826096549851276 0.0 0.0 0.0 0.0 30 3.983095077459679 0.0 0.0 0.0 0.0 31 4.109542540236177 0.0 0.0 0.0 0.0 32 4.247870972669527 0.0 0.0 0.0 0.0 33 4.3785616388949 0.0 0.0 0.0 0.0 34 4.508403664430499 0.0 0.0 0.0 0.0 35 4.688315490662831 0.0 0.0 0.0 0.0 36 4.810095429645565 0.0 0.0 0.0 0.0 37 4.9267835244896485 0.0 0.0 0.0 0.0 38 5.054928268645697 0.0 0.0 0.0 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTTAAA 65 0.0 44.000004 31 GCCGTTA 65 0.0 44.000004 29 CCGTTAA 65 0.0 44.000004 30 AGGTCAC 25 4.4320408E-5 44.0 32 TCACGCG 25 4.4320408E-5 44.0 14 ACAACTA 25 4.4320408E-5 44.0 15 TTTAGTA 20 7.8437326E-4 44.0 16 GTGTTGT 20 7.8437326E-4 44.0 43 TCGCCCG 45 4.765752E-10 44.0 35 AACGTTT 35 1.43953E-7 44.0 17 CGGGTTT 20 7.8437326E-4 44.0 21 CTAGATA 25 4.4320408E-5 44.0 19 AGCGTTT 20 7.8437326E-4 44.0 26 GTCATAA 20 7.8437326E-4 44.0 11 AAACTCT 25 4.4320408E-5 44.0 21 CTAGACA 20 7.8437326E-4 44.0 34 CGGGTAC 35 1.43953E-7 44.0 40 AGCGTCG 20 7.8437326E-4 44.0 40 AAGTACT 25 4.4320408E-5 44.0 31 AACAAGG 20 7.8437326E-4 44.0 33 >>END_MODULE