##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1527719_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 344638 Sequences flagged as poor quality 0 Sequence length 52 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.02680783894986 33.0 31.0 34.0 30.0 34.0 2 32.17636476534799 34.0 31.0 34.0 30.0 34.0 3 32.23062169580835 34.0 31.0 34.0 30.0 34.0 4 36.035376249862175 37.0 35.0 37.0 35.0 37.0 5 35.94523819195794 37.0 35.0 37.0 35.0 37.0 6 36.022243629547525 37.0 35.0 37.0 35.0 37.0 7 36.45974616844341 37.0 36.0 37.0 35.0 37.0 8 36.56495221072546 37.0 37.0 37.0 35.0 37.0 9 38.553598268327924 39.0 39.0 39.0 37.0 39.0 10 37.78918749528491 39.0 38.0 39.0 35.0 39.0 11 37.43527411370771 39.0 37.0 39.0 35.0 39.0 12 37.246551453989404 39.0 37.0 39.0 34.0 39.0 13 37.008185400333105 39.0 37.0 39.0 33.0 39.0 14 37.819210301823944 40.0 38.0 40.0 33.0 40.0 15 37.88153076561493 40.0 38.0 40.0 33.0 40.0 16 37.89026166586389 40.0 38.0 40.0 33.0 40.0 17 37.98738676524353 40.0 38.0 40.0 34.0 40.0 18 37.93987894544421 40.0 38.0 40.0 34.0 40.0 19 37.916848983571164 40.0 38.0 40.0 34.0 40.0 20 38.06276150627615 40.0 38.0 40.0 34.0 40.0 21 38.03987662416797 40.0 38.0 40.0 34.0 40.0 22 38.07622490845467 40.0 38.0 40.0 34.0 40.0 23 37.969855326458486 40.0 38.0 40.0 34.0 40.0 24 37.804966370510506 40.0 38.0 40.0 34.0 40.0 25 37.63907056099443 40.0 37.0 40.0 33.0 40.0 26 37.288322819886375 40.0 36.0 40.0 33.0 40.0 27 37.15995624394292 40.0 35.0 40.0 33.0 40.0 28 37.06127008629345 40.0 35.0 40.0 32.0 40.0 29 36.97744009656509 40.0 35.0 40.0 32.0 40.0 30 36.71532738699737 39.0 35.0 40.0 31.0 40.0 31 36.627078267631546 39.0 35.0 40.0 31.0 40.0 32 36.39732995200762 39.0 35.0 40.0 30.0 40.0 33 36.26823507564459 39.0 35.0 40.0 30.0 40.0 34 36.04919944985753 39.0 35.0 40.0 30.0 40.0 35 35.86694154446114 39.0 35.0 40.0 29.0 40.0 36 35.638379981313726 39.0 35.0 40.0 27.0 40.0 37 35.22656526558302 39.0 35.0 40.0 24.0 40.0 38 35.03928179713206 39.0 35.0 40.0 24.0 40.0 39 34.760322425269415 39.0 35.0 40.0 22.0 40.0 40 34.34904450466867 38.0 34.0 40.0 19.0 40.0 41 34.09772572960614 38.0 34.0 40.0 18.0 40.0 42 33.78990709091859 37.0 33.0 40.0 17.0 40.0 43 33.49786442586134 37.0 33.0 40.0 15.0 40.0 44 33.22820176533058 37.0 33.0 40.0 15.0 40.0 45 33.00715243240734 36.0 33.0 40.0 13.0 40.0 46 32.85131645378629 35.0 33.0 40.0 12.0 40.0 47 32.5999657611755 35.0 32.0 40.0 11.0 40.0 48 32.33668951189364 35.0 32.0 40.0 10.0 40.0 49 32.26058356884615 35.0 32.0 40.0 10.0 40.0 50 31.97366802267887 35.0 31.0 40.0 10.0 40.0 51 31.829040906690498 35.0 31.0 40.0 10.0 40.0 52 31.23730697137286 35.0 30.0 39.0 9.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 1.0 13 0.0 14 0.0 15 9.0 16 21.0 17 55.0 18 126.0 19 213.0 20 400.0 21 702.0 22 1147.0 23 1944.0 24 2952.0 25 4033.0 26 5557.0 27 7250.0 28 8689.0 29 8675.0 30 8174.0 31 8537.0 32 10403.0 33 13204.0 34 18435.0 35 23899.0 36 36196.0 37 57043.0 38 87780.0 39 39193.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 0.0 0.0 100.0 0.0 2 100.0 0.0 0.0 0.0 3 0.0 100.0 0.0 0.0 4 0.0 0.0 100.0 0.0 5 0.0 0.0 0.0 100.0 6 0.0 100.0 0.0 0.0 7 99.29955489528143 0.5695831568196195 0.101555835398302 0.029306112500652858 8 97.32269801937105 2.008774424178413 0.463094609416257 0.20543294703427945 9 94.78322181535408 3.322326615173022 1.1055078081929446 0.7889437612799517 10 47.4503682124432 37.13548709080252 5.55423371769799 9.859910979056286 11 28.639035741850872 36.9286033461197 18.190100917484433 16.242259994544998 12 37.078905982509184 24.873345365281832 20.905413796505318 17.142334855703666 13 24.55765179695797 27.98646695953435 24.57564168779995 22.88023955570773 14 27.759272047771866 31.367986118768098 20.743214619397747 20.129527214062293 15 25.785026607628875 32.27096257522386 20.952129480788535 20.99188133635873 16 26.436144592296845 31.298928150697254 25.46149873200286 16.803428525003046 17 30.64461841120248 29.357760896941137 20.605098683256053 19.39252200860033 18 28.56330410459671 29.826658696951586 23.337821134059507 18.272216064392204 19 25.949837220503834 28.873774801385803 24.98737806045764 20.189009917652726 20 25.982335087831288 28.83286230769677 23.977913056598517 21.20688954787342 21 22.79696377068112 27.51176596892972 29.2242875132748 20.46698274711436 22 22.942333695065546 31.94163150900365 23.477678027379454 21.63835676855135 23 22.024268943064897 35.67540433730465 23.249322477498126 19.051004242132326 24 21.48486237733506 34.65636406896512 24.373400495592477 19.485373058107346 25 22.51463854827384 31.155879502550505 22.997464005710338 23.332017943465317 26 25.961443601692206 31.942211828063073 20.40837052211306 21.687974048131665 27 23.924233543602273 32.84170637016231 21.04846244465207 22.185597641583342 28 29.335708772683223 31.507843012088045 19.654245904398238 19.502202310830494 29 31.16139253361498 32.236143431658725 19.120932688792298 17.481531345933995 30 29.15610002379308 34.57947179359211 19.554431026178193 16.70999715643661 31 28.636424306083484 33.38488500977837 18.90824575351528 19.070444930622855 32 24.79123021837406 36.502649156506244 20.578404006522785 18.127716618596903 33 27.422686993308922 36.4704414487085 19.246861924686193 16.860009633296386 34 24.390229748315623 37.74975481519739 17.58076590509462 20.27924953139236 35 23.682240495824605 42.26927964995154 18.33953307528479 15.708946778939062 36 24.696638211688786 39.49796598169674 18.59168170660229 17.213714100012186 37 22.95510071437276 40.79033652702256 18.93987314225361 17.31468961635107 38 25.14174293026306 39.831649440862584 18.396404343107843 16.630203285766516 39 23.363355172673934 37.669960944527304 18.106244813398405 20.860439069400353 40 23.045050168582687 39.775938811158376 19.895658633116486 17.28335238714245 41 22.65246432488582 40.09076190089311 20.384287281147177 16.872486493073893 42 23.108304946059345 39.87865528467551 19.082341471340943 17.9306982979242 43 22.031813090837343 40.24976932317388 20.296368943645216 17.42204864234356 44 22.013823199995358 38.261886385134545 21.425379673744622 18.29891074112547 45 19.962975644009077 39.00411446213128 19.687324090785115 21.345585803074528 46 21.05223451853829 40.64989931464319 19.456647264666113 18.841218902152406 47 23.337821134059507 38.651860793064024 19.61652516553601 18.393792907340455 48 23.818905634317748 37.69549498314173 19.528026508974634 18.957572873565887 49 23.18171530707583 38.43685258154934 20.26329075725834 18.118141354116492 50 20.487874233253443 40.93048357987221 20.35527132817623 18.22637085869811 51 20.53952262954172 40.391077014142375 20.030582814431376 19.03881754188453 52 22.06169952239741 37.679536209007715 20.374131697607346 19.884632570987527 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 15.0 4 30.0 5 53.5 6 77.0 7 93.0 8 109.0 9 881.5 10 1654.0 11 2231.5 12 2809.0 13 2672.0 14 2125.0 15 1715.0 16 1599.0 17 1483.0 18 1398.0 19 1313.0 20 1613.0 21 1913.0 22 2515.5 23 3118.0 24 4182.0 25 5246.0 26 5946.0 27 6646.0 28 8533.0 29 10420.0 30 11969.5 31 13519.0 32 14358.0 33 15197.0 34 14488.5 35 13780.0 36 14622.5 37 15465.0 38 14195.0 39 12888.5 40 12852.0 41 13385.5 42 13919.0 43 13628.0 44 13337.0 45 13804.0 46 14271.0 47 15305.5 48 16340.0 49 16723.0 50 17106.0 51 20701.5 52 24297.0 53 25157.5 54 26018.0 55 24251.0 56 22484.0 57 20292.5 58 18101.0 59 16749.5 60 15398.0 61 14004.5 62 12611.0 63 10835.0 64 7364.0 65 5669.0 66 5584.0 67 5499.0 68 4383.0 69 3267.0 70 2659.5 71 2052.0 72 1599.5 73 1147.0 74 1077.5 75 1008.0 76 541.5 77 75.0 78 95.0 79 115.0 80 84.5 81 54.0 82 29.5 83 5.0 84 2.5 85 0.0 86 0.0 87 0.0 88 0.0 89 0.0 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 52 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 52 344638.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 27.67135371026991 #Duplication Level Percentage of deduplicated Percentage of total 1 77.91875511188474 21.56117433364864 2 8.958119245852819 4.957665724615393 3 3.7151605393955913 3.084105641281577 4 1.9996644506427865 2.2133368926235644 5 1.280330516116855 1.771423928876096 6 0.8000754986053731 1.3283503270097898 7 0.5945515173122496 1.1516431734167445 8 0.4383113478598243 0.9702934673483481 9 0.3680557011932974 0.9166139543521027 >10 2.534446238701424 15.11992293362891 >50 0.8734769204957742 17.202688037883227 >100 0.4980810771134367 23.84879206587782 >500 0.012583100895497348 2.281814541634991 >1k 0.008388733930331564 3.5921749778027956 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source TGATCAGGGAAGCAGTGGTATCAACGCAGAGTGCAGTGCTTGATCAGGGAAG 2574 0.7468706294720837 No Hit TGATCAGGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1830 0.5309919393682647 No Hit TGATCAGGGGAAGGCAGTTTTAACTTTTTCAAAGATTGCAAACTTCTTGTAG 1830 0.5309919393682647 No Hit TGATCAGGGGAGTGCAGTGCTTAATCAGGGAAAAAAAAAAAAAAAAAAAAAA 1474 0.4276951467917061 No Hit TGATCAGGGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1321 0.38330073874616266 No Hit TGATCAGGGAGTGCAGTGCTTAATCAGGGAAAAAAAAAAAAAAAAAAAAAAA 1187 0.34441936176509846 No Hit TGATCAGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1091 0.3165640469129928 No Hit TGATCAGGGGAGGCATTCAGGCAGCGAGAGCAGAGCAGCGTAGAGCAGCACA 1073 0.3113411753782229 No Hit TGATCAGGGGAGTGCAGTGCTTGATCAGGGAAAAAAAAAAAAAAAAAAAAAA 970 0.2814547438181512 No Hit TGATCAGGGGAGTGCAGTGCTTAATCAGGGGAAAAAAAAAAAAAAAAAAAAA 806 0.233868580945804 No Hit TGATCAGGGGCCCGTCTGCCCCAGCCCAGACACCGAAGCTACTCTCCTTCCA 711 0.20630342562340775 No Hit TGATCAGGGGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 672 0.1949872039647398 No Hit TGATCAGGGCAGAGTGCAGTGCTTAATCAGGGAAAAAAAAAAAAAAAAAAAA 641 0.18599225854374735 No Hit TGATCAGGGGGGCTGGAGAGATGGCTCAGCCGTTAAAGGCTAGGCTCACAAC 632 0.18338082277636245 No Hit TGATCAGGGGTGCAGTGCTTAATCAGGGAAAAAAAAAAAAAAAAAAAAAAAA 623 0.18076938700897754 No Hit TGATCAGGGGGCGCCAGTCCTCCGATAGACTGAGTCGCCCGGGTACCCGTGT 569 0.16510077240466808 No Hit TGATCAGGGAGCCGACTTAGAACTGGTGCGGACCAGGGGAATCCGACTGTTT 568 0.16481061287495866 No Hit TGATCAGGGGAGTCCAGAGCCTGCAACCTACTTCCTTCTAGCTGCAGCCACT 566 0.16423029381553977 No Hit TGATCAGGGAGTGCAGTGCTTAATCAGGGGAAAAAAAAAAAAAAAAAAAAAA 563 0.16335981522641146 No Hit TGATCAGGGACTAATCCTAGCCCTAGCCCTACACAAATATAATTATACTATT 543 0.1575566246322228 No Hit TGATCAGGGGACACCACCCACCCAGAGTGGAGAAGCCCAGCCAGTCGCTGTC 473 0.1372454575525624 No Hit TGATCAGGGGCAGTGCATCGTGGGTGAGAACGAGCGGAGCAGGTTTGGCGTT 467 0.1355045003743058 No Hit TGATCAGGGATTAAGAGCCTTGTCTGTTTAGTGCTGTGGATGGCTCCCAGAT 459 0.13318322413663033 No Hit TGATCAGGGAGATCGGAAGAGCTCGTATGCCGTCTTCTGCTTGAAAAAAAAA 451 0.13086194789895486 Illumina Single End Adapter 2 (100% over 34bp) TGATCAGGGGAGTGCAGTGCTTAATCAGGGGGAAAAAAAAAAAAAAAAAAAA 447 0.1297013097801171 No Hit TGATCAGGGGATCGAGCATCGGTCGGAGCTGCTGCCAGCCAACTCTCGAAGC 445 0.12912099072069824 No Hit TGATCAGGGAGAGTGCAGTGCTTAATCAGGGAAAAAAAAAAAAAAAAAAAAA 436 0.12650955495331334 No Hit TGATCAGGGGCCGGTAGTGGTGGCGCACGCCGGTAGGATTTGCTGAAGGAGG 435 0.1262193954236039 No Hit TGATCAGGGGGTACAGTGAAACTGCAAATGGCTGAGGACATTCTGTATCCCG 427 0.12389811918592843 No Hit TGATCAGGGATTAGTTTGTGACTCTCTTGAGGGCAAGGGTGAGGTAGGGTCA 424 0.12302764059680012 No Hit TGATCAGATCGGAAGAGCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAAAAA 420 0.1218670024779624 Illumina Single End Adapter 2 (100% over 34bp) TGATCAGGGAGAGTGCAGTGCTTGATCAGGGAAGTAATTTACACCGGAAACA 419 0.12157684294825295 No Hit TGATCAGGGGAGATCGGAAGAGCTCGTATGCCGTCTTCTGCTTGAAAAAAAA 404 0.11722445000261143 Illumina Single End Adapter 2 (100% over 34bp) TGATCAGGGAGTGCAGTGCTTGATCAGGGAAAAAAAAAAAAAAAAAAAAAAA 400 0.11606381188377371 No Hit TGATCAGGGGTGCAGTGCTTAATCAGGGGAAAAAAAAAAAAAAAAAAAAAAA 390 0.11316221658667935 No Hit TGATCAGGGGAGTGCAGTGCTTGATCGGAAGAGCTCGTATGCCGTCTTCTGC 388 0.11258189752726049 Illumina Single End Adapter 2 (96% over 31bp) TGATCAGGGAACTTCACGCGTACACACAATACGTTTTGGCCCTCTCCACCTC 386 0.11200157846784162 No Hit TGATCAGGGAGCAGACCGTAACCATTATAGACGCTATCCACGTCGTAGGGGT 384 0.11142125940842273 No Hit TGATCAGGATCGGAAGAGCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAAAA 383 0.11113109987871332 Illumina Single End Adapter 2 (97% over 34bp) TGATCAGGGCAGAGTGCAGTGCTTAATCAGGGGAAAAAAAAAAAAAAAAAAA 368 0.1067787069330718 No Hit TGATCAGGGGAGACAGAGGACTGGCCATTCAAGGTCACTGTCAGACCCTGAG 360 0.10445743069539633 No Hit TGATCAGGGGGCCCGTCCGCCCCAGCCCAGACACCGAAGCTACTCTCCTTCC 353 0.1024263139874303 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.39867919382076267 0.0 0.0 0.0 0.0 7 0.4770222668423099 0.0 0.0 0.0 0.0 8 0.5228674725364005 0.0 0.0 0.0 0.0 9 0.60004990743911 0.0 0.0 0.0 0.0 10 0.8040320568248422 0.0 0.0 0.0 0.0 11 1.1281402515102803 0.0 0.0 0.0 0.0 12 1.248266296809986 0.0 0.0 0.0 0.0 13 1.3254487317126957 0.0 0.0 0.0 0.0 14 1.4708186560971221 0.0 0.0 0.0 0.0 15 1.6547797979329035 0.0 0.0 0.0 0.0 16 1.7833204695941829 0.0 0.0 0.0 0.0 17 1.8982236433591189 0.0 0.0 0.0 0.0 18 2.003261393113934 0.0 0.0 0.0 0.0 19 2.1045270689825264 0.0 0.0 0.0 0.0 20 2.2200105618068813 0.0 0.0 0.0 0.0 21 2.3189549614377984 0.0 0.0 0.0 0.0 22 2.4440137187425646 0.0 0.0 0.0 0.0 23 2.5809690167654176 0.0 0.0 0.0 0.0 24 2.7144424004317576 0.0 0.0 0.0 0.0 25 2.842402753033618 0.0 0.0 0.0 0.0 26 3.0104051207353804 0.0 0.0 0.0 0.0 27 3.1749255740806297 0.0 0.0 0.0 0.0 28 3.343218101312101 0.0 0.0 0.0 0.0 29 3.46189334896326 0.0 0.0 0.0 0.0 30 3.5982683279266943 0.0 0.0 0.0 0.0 31 3.709979746864826 0.0 0.0 0.0 0.0 32 3.840261375704362 0.0 0.0 0.0 0.0 33 3.9571956661772645 0.0 0.0 0.0 0.0 34 4.070648042293653 0.0 0.0 0.0 0.0 35 4.229655464574423 0.0 0.0 0.0 0.0 36 4.34949135034442 0.0 0.0 0.0 0.0 37 4.468166597995578 0.0 0.0 0.0 0.0 38 4.590323760003249 0.0 0.0 0.0 0.0 39 4.722056186491333 0.0 0.0 0.0 0.0 40 4.853788612979416 0.0 0.0 0.0 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TTAGGTT 20 6.3052727E-4 46.000004 14 AGACTTC 20 6.3052727E-4 46.000004 38 AGGTATT 20 6.3052727E-4 46.000004 40 CGGGTAC 55 1.8189894E-12 46.000004 40 AACCGGT 40 5.5915734E-9 46.000004 23 GCCCATT 20 6.3052727E-4 46.000004 13 ACAAATC 20 6.3052727E-4 46.000004 46 ACCGGTA 40 5.5915734E-9 46.000004 24 TCCATAG 20 6.3052727E-4 46.000004 25 GTACCCG 55 1.8189894E-12 46.000004 43 AAATCGC 35 1.0167787E-7 46.000004 44 GATGTCT 20 6.3052727E-4 46.000004 14 CATATAA 20 6.3052727E-4 46.000004 32 GATCGCA 20 6.3052727E-4 46.000004 36 GTACACG 20 6.3052727E-4 46.000004 38 GGTCGGT 20 6.3052727E-4 46.000004 24 AAGAGCG 20 6.3052727E-4 46.000004 10 ACGCATG 20 6.3052727E-4 46.000004 24 CGCGGAA 20 6.3052727E-4 46.000004 23 AACCCTT 20 6.3052727E-4 46.000004 11 >>END_MODULE