##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1527707_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 483698 Sequences flagged as poor quality 0 Sequence length 52 %GC 58 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.20198140161836 33.0 31.0 34.0 31.0 34.0 2 32.39047504848067 34.0 31.0 34.0 31.0 34.0 3 32.72441275341225 34.0 31.0 34.0 31.0 34.0 4 36.32378674296772 37.0 37.0 37.0 35.0 37.0 5 35.83932122936212 37.0 35.0 37.0 35.0 37.0 6 36.161900607403794 37.0 35.0 37.0 35.0 37.0 7 36.4187220124954 37.0 36.0 37.0 35.0 37.0 8 36.54014488379113 37.0 37.0 37.0 35.0 37.0 9 38.60255159210912 39.0 39.0 39.0 37.0 39.0 10 37.835074778064 39.0 38.0 39.0 35.0 39.0 11 37.57944006384149 39.0 37.0 39.0 35.0 39.0 12 37.32098954306199 39.0 37.0 39.0 34.0 39.0 13 37.16486113235945 39.0 37.0 39.0 34.0 39.0 14 37.956332256904105 40.0 38.0 40.0 33.0 40.0 15 38.04803823873574 40.0 38.0 40.0 33.0 40.0 16 37.788812440820514 40.0 37.0 40.0 33.0 40.0 17 37.906654565451994 40.0 37.0 40.0 33.0 40.0 18 37.9474672212827 40.0 38.0 40.0 34.0 40.0 19 37.473564083374335 40.0 37.0 40.0 32.0 40.0 20 37.73249217486944 40.0 37.0 40.0 33.0 40.0 21 37.838903613411674 40.0 37.0 40.0 33.0 40.0 22 37.84647445306782 40.0 37.0 40.0 33.0 40.0 23 37.803939648292946 40.0 37.0 40.0 33.0 40.0 24 37.75854768884717 40.0 37.0 40.0 33.0 40.0 25 37.66473295320634 40.0 37.0 40.0 33.0 40.0 26 37.32755148873884 40.0 37.0 40.0 32.0 40.0 27 37.2492319587842 40.0 36.0 40.0 32.0 40.0 28 37.12168336441333 40.0 36.0 40.0 32.0 40.0 29 37.08071978796687 40.0 36.0 40.0 31.0 40.0 30 36.73364371984172 39.0 35.0 40.0 31.0 40.0 31 36.65874574631278 39.0 35.0 40.0 30.0 40.0 32 35.96547845970006 39.0 35.0 40.0 29.0 40.0 33 36.203108137722296 39.0 35.0 40.0 30.0 40.0 34 36.01721528722467 39.0 35.0 40.0 29.0 40.0 35 36.012580163655834 39.0 35.0 40.0 29.0 40.0 36 35.932794843063235 39.0 35.0 40.0 29.0 40.0 37 35.33559369689352 38.0 35.0 40.0 25.0 40.0 38 35.37680536202341 38.0 34.0 40.0 26.0 40.0 39 35.191348734127494 38.0 34.0 40.0 26.0 40.0 40 35.00005168514238 38.0 34.0 40.0 25.0 40.0 41 34.74079901095312 38.0 34.0 40.0 24.0 40.0 42 34.640742777518206 38.0 33.0 40.0 24.0 40.0 43 34.364239670207446 37.0 33.0 40.0 23.0 40.0 44 34.33733031767756 37.0 33.0 40.0 24.0 40.0 45 34.09756500957209 37.0 33.0 40.0 23.0 40.0 46 33.997374394766986 36.0 33.0 40.0 23.0 40.0 47 33.86914148911097 36.0 33.0 40.0 23.0 40.0 48 33.70380071863022 36.0 32.0 40.0 23.0 40.0 49 33.95153174087964 36.0 33.0 40.0 23.0 40.0 50 33.768080496508155 36.0 33.0 40.0 23.0 40.0 51 33.781512431310446 36.0 33.0 40.0 23.0 40.0 52 33.26546522830361 35.0 33.0 39.0 21.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 1.0 13 0.0 14 1.0 15 4.0 16 7.0 17 29.0 18 64.0 19 127.0 20 315.0 21 567.0 22 1026.0 23 1857.0 24 2869.0 25 3967.0 26 5319.0 27 7286.0 28 8919.0 29 10662.0 30 12051.0 31 13573.0 32 15970.0 33 19618.0 34 29410.0 35 33539.0 36 45463.0 37 74442.0 38 136969.0 39 59643.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 0.0 0.0 0.0 100.0 2 0.0 0.0 100.0 0.0 3 0.0 0.0 0.0 100.0 4 0.0 0.0 0.0 100.0 5 0.0 100.0 0.0 0.0 6 0.0 0.0 100.0 0.0 7 99.43187691493452 0.3239624724518191 0.13644877588908783 0.1077118367245678 8 99.35207505509636 0.40231714830328014 0.21501019231007779 0.0305976042902803 9 98.2958374853731 1.054376904597497 0.2784795471554565 0.371306062873942 10 56.02958871031098 33.43718601276003 2.8280042505861096 7.705221026342883 11 29.217610988674753 31.256486485368967 18.803468279794416 20.72243424616186 12 34.894293546799865 14.805105665105087 27.01127563066211 23.289325157432945 13 20.388548226372656 14.161315531592026 26.75739821128059 38.692738030754725 14 21.430313956228886 24.72286426654648 30.21761512348614 23.629206653738493 15 30.40616252289652 15.50016745986132 25.102026471062523 28.991643546179642 16 26.98791394630534 17.116051751299363 30.606494134770042 25.28954016762525 17 36.903398401481915 19.84957556161076 19.346369015377363 23.900657021529963 18 35.1891055989481 17.506171206000438 22.638092363416842 24.666630831634613 19 29.826048484798367 17.117912416425124 27.465898143056204 25.590140955720305 20 29.580440688198006 26.557893561685187 20.685014203077127 23.176651547039683 21 31.984006549541245 15.713316987045637 29.79710480506432 22.505571658348806 22 28.382999309486497 17.374890944349573 20.625679659622325 33.616430086541605 23 26.253157962199552 28.10886131429115 21.04660345918321 24.591377264326088 24 26.99328920111309 28.416491281750183 20.57358103610104 24.016638481035688 25 27.040839532104744 19.47144705994236 19.65358550169734 33.83412790625556 26 34.36503768880583 19.35484537872805 19.62836315221481 26.651753780251315 27 26.612679812610345 17.686448982629656 20.587846135398532 35.113025069361456 28 28.08901421961637 27.83120872941381 19.620093529433653 24.459683521536167 29 37.101869348229684 19.384616020740214 18.79581887872185 24.71769575230826 30 28.023477459075703 27.017684588317504 19.660614681061322 25.298223271545467 31 36.526303602661166 20.235353464351725 19.028402019441884 24.20994091354523 32 31.09150751088489 18.616368064370743 26.27693312769538 24.015191297048986 33 36.91849046305753 19.109444322697218 19.55827809914451 24.413787115100742 34 28.537434514924602 21.413361229527514 20.73049712837349 29.31870712717439 35 29.7119276904184 27.786552766395562 21.181191569946538 21.3203279732395 36 36.77873383805598 21.685431819027574 18.08483806011189 23.45099628280456 37 30.352823455958056 22.539683852321076 24.238057631001162 22.869435060719706 38 37.31336495085777 20.81836187042328 18.514651704162517 23.353621474556437 39 29.52234658816038 20.740834156849935 19.853917113570866 29.88290214141882 40 28.048079586849646 21.123717691617497 25.04889414469359 25.779308576839266 41 26.82665630207278 20.760267770385653 21.35836823803282 31.054707689508742 42 25.756153633052026 19.82207906586341 28.07805696943134 26.34371033165322 43 26.154749451103786 18.56571662483616 23.27299265244016 32.006541271619895 44 26.39601569574404 19.645109138346655 21.929592431641233 32.02928273426808 45 27.45907570426175 25.533494039669378 22.244665059603307 24.762765196465566 46 27.571749314655015 20.402193103961565 26.40531902137284 25.620738560010587 47 32.330710484641244 20.58681243255089 21.993888748764725 25.088588334043145 48 33.376197544749 21.043709091209806 22.426390020219227 23.15370334382197 49 32.40823819821459 20.909741202155065 22.691844911494364 23.990175688135988 50 27.647623103672125 23.56801144515793 22.11545220364773 26.668913247522212 51 25.253360567957696 26.35197995443438 22.645535023919884 25.749124453688044 52 31.720619063961397 22.26906044680772 22.097879255237775 23.91244123399311 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 6.0 6 12.0 7 8.5 8 5.0 9 5.0 10 5.0 11 57.0 12 109.0 13 245.0 14 357.0 15 333.0 16 321.5 17 310.0 18 250.5 19 191.0 20 482.5 21 774.0 22 602.0 23 430.0 24 676.0 25 922.0 26 1055.0 27 1188.0 28 1325.0 29 1462.0 30 1531.5 31 1601.0 32 2016.0 33 2431.0 34 2436.0 35 2441.0 36 3252.0 37 4063.0 38 4797.0 39 6148.5 40 6766.0 41 6825.5 42 6885.0 43 8570.0 44 10255.0 45 10757.0 46 11259.0 47 12452.5 48 13646.0 49 16015.5 50 18385.0 51 19736.0 52 21087.0 53 24813.0 54 28539.0 55 37993.0 56 47447.0 57 49061.5 58 50676.0 59 50262.5 60 49849.0 61 45122.5 62 40396.0 63 40062.5 64 35241.0 65 30753.0 66 28728.0 67 26703.0 68 22418.5 69 18134.0 70 16653.0 71 15172.0 72 12013.5 73 8855.0 74 9519.5 75 10184.0 76 7123.0 77 4062.0 78 2961.0 79 1860.0 80 1229.5 81 599.0 82 385.5 83 172.0 84 115.0 85 58.0 86 48.0 87 38.0 88 19.0 89 0.0 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 52 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 52 483698.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 12.879524000512715 #Duplication Level Percentage of deduplicated Percentage of total 1 72.64920222158014 9.356871436309433 2 9.778805098076985 2.5189270991403725 3 3.860477061863944 1.4916332091511646 4 1.9968538315836786 1.0287410739759106 5 1.089922629939966 0.7018842335506866 6 0.691836013997239 0.5346311128017895 7 0.4943978939933866 0.4457326679043535 8 0.361167292689974 0.3721330251520577 9 0.2102796237439404 0.2437471314745978 >10 4.3211660085396 15.16462751551588 >50 2.929468040707567 26.89798179856026 >100 1.5698738322257537 33.475846499261934 >500 0.030498571382708915 2.476131801247886 >1k 0.014446691707598961 3.5598658667184897 >5k 0.0016051879675109955 1.7312455292351838 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CTCCATGGGAAGCAGTGGTATCAACGCAGAGTGCAGTGCTCTCCATGGGAAG 8374 1.7312455292351838 No Hit CTCCATGGGAAGCAGTGGTATCAACGCAGAGTGCAGTGCTCTCCATGGGGAG 3361 0.6948550541867032 No Hit CTCCATGGGGAATCCGCAGCGGCTTCTGAGCAGATCAGACTCTCCTCGTTCG 2598 0.5371119996361366 No Hit CTCCATGGGGAGTCCCGCCCGGGAGCCGGCAGGGAGCGGAGCTGTGGAGCCT 2498 0.5164379426832445 No Hit CTCCATGGGAGTCCCGCCCGGGAGCCGGCAGGGAGCGGAGCTGTGGAGCCTC 2339 0.48356619212814606 No Hit CTCCATGGGGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAA 1470 0.3039086372075138 No Hit CTCCATGGGAATCCGCAGCGGCTTCTGAGCAGATCAGACTCTCCTCGTTCGC 1448 0.29936034467787753 No Hit CTCCATGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTC 1334 0.27579191975158057 No Hit CTCCATGGGGAGTGACGAGAGGCTTTGTCCGGTTCGGCGGTCTTTCTGTGAG 1145 0.23671795211061447 No Hit CTCCATGGGAAGCAGTGGTATCAACGCAGATCGGAAGAGCTCGTATGCCGTC 1026 0.2121158243366729 Illumina Single End Adapter 2 (100% over 25bp) CTCCATGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCT 975 0.20157205529069794 No Hit CTCCATGGGGCGGCAGCACTCCAGTCCATAGCTTGCAGCAGCCAGGTTCCAT 875 0.18089799833780584 No Hit CTCCATGGGGGTCTCTTGCTGCAGCAACGAGAGTGGGAGCACCTGGAGCGCG 831 0.1718014132785333 No Hit CTCCATGGGGGCGGCAGCACTCCAGTCCATAGCTTGCAGCAGCCAGGTTCCA 787 0.16270482821926077 No Hit CTCCATGGGGTCTCTTGCTGCAGCAACGAGAGTGGGAGCACCTGGAGCGCGA 689 0.14244425240542652 No Hit CTCCATGGGGCTCTTTCCCGTCTTGCAAGATGGCGGGTGAAAAAGCGCCTGA 677 0.1399633655710795 No Hit CTCCATGGGGGAAGACGCGCCTGCGCAGAAGTGACAGCACGAGCGGGATTGG 666 0.13768921930626135 No Hit CTCCATGGGGCTTTGCAGACGCCACTGTCGCTTTTCGCCGCTTGCTGCAGCC 616 0.1273521908298153 No Hit CTCCATGGGGCTCTTTCTCTTGGGCCCGTGGCGCCGGCAAGATGGGCAAGTG 604 0.12487130399546824 No Hit CTCCATGGGAAGCAGTGGTATCAACGCAGAGTGCAGATCGGAAGAGCTCGTA 568 0.1174286434924271 No Hit CTCCATGGGGCTCTTCGGACTTGGGCTTGGGTTCCGGCGACATGGCTAAACG 542 0.11205338868467515 No Hit CTCCATGGGGAGATCGGAAGAGCTCGTATGCCGTCTTCTGCTTGAAAAAAAA 542 0.11205338868467515 Illumina Single End Adapter 2 (100% over 34bp) CTCCATGGGAAGTATTACAGCTCCTGAACTGCCTTCTACTAAATCAGACTTG 533 0.11019272355891487 No Hit CTCCATGGGAGTCCGGAGTAGGCGAGCGAGCGAGGCAGAGGTTTTTGGTCGG 520 0.10750509615503889 No Hit CTCCATGGGGTATCCGCAGCGGCTTCTGAGCAGATCAGACTCTCCTCGTTCG 517 0.10688487444645213 No Hit CTCCATGGGCTCTTTCCCGTCTTGCAAGATGGCGGGTGAAAAAGCGCCTGAT 512 0.10585117159880753 No Hit CTCCATGGGAGTAGAGGCCACAGGAAGACCGTCGTGGAGAAGCCCCGATGGC 510 0.10543769045974968 No Hit CTCCATGGGGACGGCAGTGGTGCTGGGAGTCTCGTGTCCGTGGTGCCGTTAC 510 0.10543769045974968 No Hit CTCCATGGGGGGCTGGCGAGATGGCTCAGCGGGTAAGAGCACTGACTGCTCT 503 0.10399050647304724 No Hit CTCCATGGGAAGCAGTGGTATCAACGCAGAGTGCAGTGCTCTCCATGGGCAG 498 0.10295680362540263 No Hit CTCCATGGGGAGTCCATAGCTTGCAGCAGCCAGGTTCCATCCTTGCAAACAC 497 0.10275006305587371 No Hit CTCCATGGGGACAATCCGCAGCGGCTTCTGAGCAGATCAGACTCTCCTCGTT 495 0.10233658191681587 No Hit CTCCATGGGGATAGTAGAGGCCACAGGAAGACCGTCGTGGAGAAGCCCCGAT 490 0.10130287906917126 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.007442660503041154 0.0 0.0 0.0 0.0 8 0.012404434171735257 0.0 0.0 0.0 0.0 9 0.03514589681991656 0.0 0.0 0.0 0.0 10 0.09551414312236148 0.0 0.0 0.0 0.0 11 0.27992673114215894 0.0 0.0 0.0 0.0 12 0.29956708524740644 0.0 0.0 0.0 0.0 13 0.32334225074323236 0.0 0.0 0.0 0.0 14 0.4455259273348246 0.0 0.0 0.0 0.0 15 0.48211900814144365 0.0 0.0 0.0 0.0 16 0.5644017548139542 0.0 0.0 0.0 0.0 17 0.6253902228249858 0.0 0.0 0.0 0.0 18 0.6578484922410264 0.0 0.0 0.0 0.0 19 0.69547527589529 0.0 0.0 0.0 0.0 20 0.7436458285955286 0.0 0.0 0.0 0.0 21 0.7628727015617183 0.0 0.0 0.0 0.0 22 0.7891287538918912 0.0 0.0 0.0 0.0 23 0.8319240517843779 0.0 0.0 0.0 0.0 24 0.8848496375837817 0.0 0.0 0.0 0.0 25 0.9166876852912355 0.0 0.0 0.0 0.0 26 1.0510690554850342 0.0 0.0 0.0 0.0 27 1.1104035989398344 0.0 0.0 0.0 0.0 28 1.3890898866648198 0.0 0.0 0.0 0.0 29 1.4343660713916535 0.0 0.0 0.0 0.0 30 1.5495205686192624 0.0 0.0 0.0 0.0 31 1.581978838035303 0.0 0.0 0.0 0.0 32 1.6518571505360784 0.0 0.0 0.0 0.0 33 1.6938254861504491 0.0 0.0 0.0 0.0 34 1.736620784042936 0.0 0.0 0.0 0.0 35 1.9371591364859893 0.0 0.0 0.0 0.0 36 1.9718915521668479 0.0 0.0 0.0 0.0 37 2.0225429917014335 0.0 0.0 0.0 0.0 38 2.071747247249317 0.0 0.0 0.0 0.0 39 2.0944887098974982 0.0 0.0 0.0 0.0 40 2.1201245405190843 0.0 0.0 0.0 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCACGAT 20 6.3078094E-4 46.000004 27 CTTAATC 20 6.3078094E-4 46.000004 33 GTTGACT 20 6.3078094E-4 46.000004 45 CTTCGAA 20 6.3078094E-4 46.000004 40 AACCGTA 20 6.3078094E-4 46.000004 27 AACCGCG 20 6.3078094E-4 46.000004 17 ATAGGGC 40 5.6006684E-9 46.000004 5 CGACGGC 20 6.3078094E-4 46.000004 22 CGACGAC 20 6.3078094E-4 46.000004 33 CTATCCG 20 6.3078094E-4 46.000004 11 CGGTTAG 20 6.3078094E-4 46.000004 12 ACCGATG 20 6.3078094E-4 46.000004 30 CCGTGTA 20 6.3078094E-4 46.000004 21 ACATTAT 20 6.3078094E-4 46.000004 18 TATATGC 20 6.3078094E-4 46.000004 19 CGATTTC 20 6.3078094E-4 46.000004 42 GAATATA 20 6.3078094E-4 46.000004 10 ATAGAAC 20 6.3078094E-4 46.000004 46 TACGGCA 20 6.3078094E-4 46.000004 23 AGGCGAT 20 6.3078094E-4 46.000004 42 >>END_MODULE