##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1527702_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 893902 Sequences flagged as poor quality 0 Sequence length 50 %GC 52 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.30835594953362 33.0 31.0 34.0 31.0 34.0 2 32.489364605963516 34.0 31.0 34.0 31.0 34.0 3 32.858511335694516 34.0 31.0 34.0 31.0 34.0 4 35.993915440395035 37.0 35.0 37.0 35.0 37.0 5 36.27446185376026 37.0 37.0 37.0 35.0 37.0 6 35.87225445294898 37.0 35.0 37.0 35.0 37.0 7 36.463294634087404 37.0 37.0 37.0 35.0 37.0 8 36.67723307476658 37.0 37.0 37.0 35.0 37.0 9 38.72953411000311 39.0 39.0 39.0 39.0 39.0 10 38.18731695420751 39.0 39.0 39.0 37.0 39.0 11 37.93619546661714 39.0 38.0 39.0 35.0 39.0 12 37.61956679815013 39.0 37.0 39.0 35.0 39.0 13 37.546870909786534 39.0 37.0 39.0 35.0 39.0 14 38.27555033997015 40.0 38.0 40.0 35.0 40.0 15 38.37879543842614 40.0 38.0 40.0 35.0 40.0 16 38.387345592693606 40.0 38.0 40.0 35.0 40.0 17 38.36727739729859 40.0 38.0 40.0 35.0 40.0 18 38.273632903830624 40.0 38.0 40.0 35.0 40.0 19 38.25403232121642 40.0 38.0 40.0 34.0 40.0 20 38.14654514700717 40.0 38.0 40.0 34.0 40.0 21 38.14597685204866 40.0 38.0 40.0 34.0 40.0 22 38.14886978662091 40.0 38.0 40.0 34.0 40.0 23 38.06526666234106 40.0 38.0 40.0 34.0 40.0 24 37.9258173714792 40.0 38.0 40.0 34.0 40.0 25 37.69226492389546 40.0 37.0 40.0 34.0 40.0 26 37.53142067027482 40.0 36.0 40.0 33.0 40.0 27 37.35273777214952 40.0 36.0 40.0 33.0 40.0 28 37.20470700367602 39.0 35.0 40.0 33.0 40.0 29 37.154653418383674 40.0 35.0 40.0 33.0 40.0 30 37.1920691529944 40.0 35.0 40.0 33.0 40.0 31 37.18042693718103 40.0 35.0 40.0 33.0 40.0 32 37.10083431964578 40.0 35.0 40.0 33.0 40.0 33 36.94527252428119 40.0 35.0 40.0 33.0 40.0 34 36.57188819356037 40.0 35.0 40.0 31.0 40.0 35 36.472385116041806 40.0 35.0 40.0 31.0 40.0 36 36.26747674801041 40.0 35.0 40.0 30.0 40.0 37 35.894319511534825 39.0 35.0 40.0 29.0 40.0 38 35.650947195553876 39.0 35.0 40.0 27.0 40.0 39 35.344642925063376 39.0 35.0 40.0 26.0 40.0 40 35.015788084152405 39.0 35.0 40.0 23.0 40.0 41 34.767513664808895 38.0 35.0 40.0 23.0 40.0 42 34.602147662719176 38.0 35.0 40.0 23.0 40.0 43 34.394491789927756 38.0 34.0 40.0 22.0 40.0 44 34.03661139588009 37.0 34.0 40.0 20.0 40.0 45 33.91546948099456 37.0 34.0 40.0 20.0 40.0 46 33.73233866799716 36.0 34.0 40.0 20.0 40.0 47 33.56326532438679 36.0 33.0 40.0 19.0 40.0 48 33.41287747426452 36.0 33.0 40.0 18.0 40.0 49 33.29888399399487 35.0 33.0 40.0 18.0 40.0 50 32.70972321350663 35.0 33.0 39.0 17.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 2.0 13 5.0 14 8.0 15 14.0 16 36.0 17 83.0 18 185.0 19 362.0 20 641.0 21 1094.0 22 1880.0 23 3110.0 24 4627.0 25 6533.0 26 8702.0 27 11978.0 28 16276.0 29 19370.0 30 21132.0 31 20751.0 32 22077.0 33 26868.0 34 46072.0 35 57634.0 36 81597.0 37 143890.0 38 263798.0 39 135177.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 0.0 0.0 100.0 0.0 2 0.0 100.0 0.0 0.0 3 100.0 0.0 0.0 0.0 4 0.0 100.0 0.0 0.0 5 100.0 0.0 0.0 0.0 6 0.0 100.0 0.0 0.0 7 99.05000771896695 0.6361994939042535 0.24957993158086683 0.06421285554792361 8 98.44580278375035 1.094191533300071 0.19912697365035542 0.2608787092992297 9 97.26625513758779 1.524663777461064 0.6649498490886026 0.5441312358625442 10 58.34397954138149 26.57080977556824 5.919664571731577 9.16554611131869 11 31.704034670467234 30.367870303456083 18.04593792160662 19.882157104470068 12 28.493391893071053 22.59900973484789 26.019295180008545 22.88830319207251 13 23.110475197504872 23.491725043684877 27.310040697973605 26.087759060836646 14 22.919067190810626 25.910670297191412 30.310593331260026 20.85966918073793 15 25.69845464044157 23.565782378829 27.855738101044636 22.8800248796848 16 26.8143487764878 25.30221433669463 24.558844258095405 23.324592628722165 17 29.560734845654224 25.043013663690207 21.690968361185007 23.70528312947057 18 26.883595740920146 25.86279032824627 22.322245615291163 24.93136831554242 19 28.893659483925532 26.00620649690906 21.26127920062826 23.838854818537154 20 26.331186192669893 27.465986204304276 22.356925032050494 23.84590257097534 21 26.451781067723307 26.22099514264427 24.715796586202963 22.61142720342946 22 27.24560410425304 24.998266029162032 23.48422981490141 24.271900051683517 23 27.18329302317256 26.93192318621057 21.571044700649512 24.313739089967356 24 27.958881398632062 26.485565531792076 21.839642376904848 23.71591069267101 25 27.31977330848348 27.302545469190136 20.224588377696882 25.153092844629498 26 28.615217328073996 26.00508780604585 20.759993824826434 24.61970104105372 27 26.570138561050317 25.531545963651496 21.48591232595967 26.41240314933852 28 28.567672966387814 26.961792232258126 19.7547382151511 24.715796586202963 29 30.148942501527014 26.7141140751447 20.113054898635422 23.02388852469286 30 28.622936295030105 26.118858666833724 21.31822056556535 23.93998447257082 31 29.669359728471356 27.36329038306213 19.3751664052659 23.592183483200618 32 30.811878707061847 25.589717888538114 20.518020991115357 23.080382413284678 33 30.76243257090822 25.478743754908255 20.5029186644621 23.255905009721424 34 27.94500963192833 28.476052184691387 22.186548413584486 21.392389769795795 35 29.246606451266473 28.694085033929895 21.53927388013451 20.520034634669123 36 29.458822108016314 28.410161292848656 20.880924307138816 21.250092291996214 37 28.780336099482938 28.376153090607247 21.18297084020396 21.66053996970585 38 30.570465218782374 26.99926837617547 20.22503585404217 22.205230550999996 39 28.786824506489527 26.062364778241907 19.4797640009755 25.671046714293066 40 29.002619974001625 26.851824920405143 20.81671145159089 23.32884365400234 41 27.793762627223117 26.627863009591657 21.80831903273513 23.770055330450095 42 26.15130070186665 26.559063521504594 22.241476134967815 25.048159641660945 43 28.403672885842074 25.438582752919224 22.35133157773447 23.806412783504232 44 27.32984152625232 25.513087564408625 21.370910905222274 25.78616000411678 45 26.87598864305036 25.967052316696908 22.005096755572758 25.151862284679975 46 26.719707529460724 27.191459466473955 20.8874127141454 25.201420289919923 47 25.68223362292511 27.286548189846314 23.174576183966476 23.856642003262102 48 25.87722144038161 27.69576530760643 22.393953699622553 24.033059552389414 49 27.415309508201126 27.997588102498934 21.208588860971336 23.37851352832861 50 24.817373716581905 28.2324013146855 22.103653420621054 24.846571548111537 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 28.5 4 57.0 5 69.0 6 81.0 7 112.5 8 144.0 9 1911.0 10 3678.0 11 3437.0 12 3196.0 13 3254.0 14 3312.0 15 3217.5 16 3123.0 17 3261.5 18 3400.0 19 4003.5 20 4607.0 21 4977.5 22 5348.0 23 7179.5 24 9011.0 25 9895.5 26 10780.0 27 11633.0 28 12486.0 29 12687.5 30 12889.0 31 14218.0 32 15547.0 33 16962.5 34 18378.0 35 17525.5 36 16673.0 37 18179.5 38 19686.0 39 21422.0 40 23158.0 41 24284.5 42 25411.0 43 27329.5 44 29248.0 45 31495.5 46 33743.0 47 36908.5 48 40074.0 49 40351.0 50 40628.0 51 45720.5 52 50813.0 53 54834.0 54 58855.0 55 62155.5 56 65456.0 57 68989.5 58 72523.0 59 70576.0 60 68629.0 61 64448.5 62 60268.0 63 56768.5 64 53269.0 65 48269.5 66 43270.0 67 35913.0 68 28556.0 69 27130.5 70 25705.0 71 20370.5 72 15036.0 73 12047.5 74 9059.0 75 6977.0 76 4895.0 77 3222.0 78 1549.0 79 1302.5 80 1056.0 81 633.5 82 211.0 83 127.0 84 43.0 85 43.5 86 44.0 87 23.5 88 3.0 89 3.0 90 3.0 91 2.0 92 1.0 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 893902.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 16.884946504726265 #Duplication Level Percentage of deduplicated Percentage of total 1 74.43652753410984 12.568567854110283 2 9.282533598651762 3.134701664831183 3 3.5583400193289547 1.8024714261598807 4 1.7451812809202965 1.1786917027755546 5 1.0096905837479324 0.8524285746454835 6 0.6491263428367341 0.6576278144164114 7 0.5145171205019023 0.6081315838808291 8 0.39079118118582645 0.5278790551073175 9 0.2890774201428758 0.4392951097353062 >10 5.351424759600258 24.839625711027434 >50 1.9535872496695115 22.588012232593073 >100 0.7688007614798491 22.498029193552938 >500 0.03628954643348938 4.034939325634483 >1k 0.013440572753144213 3.697134146287093 >5k 6.720286376572107E-4 0.5724646052427224 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source TAGAGAGGGGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGC 5045 0.564379540486541 No Hit TAGAGAGGGTACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAG 3329 0.3724121883606928 No Hit TAGAGAGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGC 3267 0.3654763050088265 No Hit TAGAGAGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 2757 0.30842307098541005 No Hit TAGAGAGGGAAGCAGTGGTATCAACGCAGAGTGCAGTGCTTAGAGAGGGA 2069 0.23145713959695804 No Hit TAGAGAGGGGAGGTTCTCTTACATCGACCGCCTAAGAGTCGCGCTGTAAG 1932 0.21613107477105992 No Hit TAGAGAGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTG 1683 0.18827567227727424 No Hit TAGAGAGGGGCTCTTTCCAGCCAGCGCCGAGCGATGGGCATCTCTCGGGA 1673 0.18715698141407 No Hit TAGAGAGGGCGCGACCTCAGATCAGACGTGGCGACCCGCTGAATTTAAGC 1591 0.1779837163357952 No Hit TAGAGAGGGGGCTTTGCAGACGCCACTGTCGCTTTTCGCCGCTTGCTGCA 1448 0.16198643699197451 No Hit TAGAGAGGGGACGGCAGTGGTGCTGGGAGTCTCGTGTCCGTGGTGCCGTT 1286 0.14386364500806575 No Hit TAGAGAGGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1254 0.14028383424581217 No Hit TAGAGAGGGGAGATCGGAAGAGCTCGTATGCCGTCTTCTGCTTGAAAAAA 1243 0.1390532742962875 Illumina Single End Adapter 2 (100% over 34bp) TAGAGAGGGAGATCGGAAGAGCTCGTATGCCGTCTTCTGCTTGAAAAAAA 1232 0.13782271434676285 Illumina Single End Adapter 2 (100% over 34bp) TAGAGAGGGGCTCTTTTTCGTGACGCCTCCCAGGCGCTCGGCTGTGTCAA 1232 0.13782271434676285 No Hit TAGAGAGGAGATCGGAAGAGCTCGTATGCCGTCTTCTGCTTGAAAAAAAA 1168 0.1306630928222557 Illumina Single End Adapter 2 (100% over 34bp) TAGAGAGGGGCTTTTCCTCAGCTGCCGCCAAGGTGCTCGGTCCTTCCGAG 1135 0.12697141297368167 No Hit TAGAGAGATCGGAAGAGCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAAA 1114 0.12462216216095276 Illumina Single End Adapter 2 (100% over 34bp) TAGAGAGGGGGTTTTTTCGGCTCCTCGGGTTTGTGTCTGCAGGTGCCATC 1088 0.12171356591662173 No Hit TAGAGAAGGGGAGTTTTCCTGCAAGTTGAGTAGCGCCAAGGCCGCTGCAG 1056 0.11813375515436816 No Hit TAGAGAGGGGATCGGAAGAGCTCGTATGCCGTCTTCTGCTTGAAAAAAAA 1025 0.11466581347843499 Illumina Single End Adapter 2 (97% over 34bp) TAGAGAGGGGCTTTTCCCCTGCCGCCGCCGACTTGCGCGGAGGCGGAAGC 944 0.10560441748648061 No Hit TAGAGAGGGGCTCTTTCTAAGCCGGCGATCCGTCAGGGTGAAGCCATGTT 903 0.10101778494734323 No Hit TAGAGAGGGGTTTTTTCGGCTCCTCGGGTTTGTGTCTGCAGGTGCCATCC 897 0.10034657042942068 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.10896049007609335 0.0 0.0 0.0 0.0 5 0.10896049007609335 0.0 0.0 0.0 0.0 6 0.32307792129338564 0.0 0.0 0.0 0.0 7 0.32688147022828007 0.0 0.0 0.0 0.0 8 0.4308078514199543 0.0 0.0 0.0 0.0 9 0.5927942884119288 0.0 0.0 0.0 0.0 10 0.772903517387812 0.0 0.0 0.0 0.0 11 1.071258370604384 0.0 0.0 0.0 0.0 12 1.1609773778333643 0.0 0.0 0.0 0.0 13 1.2293293895751436 0.0 0.0 0.0 0.0 14 1.3043935464961482 0.0 0.0 0.0 0.0 15 1.3879597539775053 0.0 0.0 0.0 0.0 16 1.4534031694749536 0.0 0.0 0.0 0.0 17 1.5173922868502363 0.0 0.0 0.0 0.0 18 1.582164487829762 0.0 0.0 0.0 0.0 19 1.6485028560177737 0.0 0.0 0.0 0.0 20 1.7204346785218065 0.0 0.0 0.0 0.0 21 1.794603882752248 0.0 0.0 0.0 0.0 22 1.8687730869826893 0.0 0.0 0.0 0.0 23 1.9545766761904548 0.0 0.0 0.0 0.0 24 2.047204279663766 0.0 0.0 0.0 0.0 25 2.1379301086696305 0.0 0.0 0.0 0.0 26 2.2331307011283115 0.0 0.0 0.0 0.0 27 2.3200529811992814 0.0 0.0 0.0 0.0 28 2.422748802441431 0.0 0.0 0.0 0.0 29 2.488080348852559 0.0 0.0 0.0 0.0 30 2.564039458464127 0.0 0.0 0.0 0.0 31 2.6174010126389695 0.0 0.0 0.0 0.0 32 2.673447424885502 0.0 0.0 0.0 0.0 33 2.72032057205376 0.0 0.0 0.0 0.0 34 2.7703260536389895 0.0 0.0 0.0 0.0 35 2.8401323635029345 0.0 0.0 0.0 0.0 36 2.8867817724985514 0.0 0.0 0.0 0.0 37 2.931865014285682 0.0 0.0 0.0 0.0 38 2.981087412266669 0.0 0.0 0.0 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTAAAC 60 0.0 44.000004 23 CGACAAT 30 2.527082E-6 44.000004 10 CCGTACC 30 2.527082E-6 44.000004 17 CGACTTA 30 2.527082E-6 44.000004 21 TATACTA 30 2.527082E-6 44.000004 44 CGTCACA 60 0.0 44.000004 44 GCCGTAC 30 2.527082E-6 44.000004 16 TGATCGC 20 7.855542E-4 44.0 33 TCCATTA 25 4.442044E-5 44.0 28 CAAACGT 20 7.855542E-4 44.0 36 TTACTAC 20 7.855542E-4 44.0 27 TACGGAC 20 7.855542E-4 44.0 26 AGTATCG 35 1.4456054E-7 44.0 17 GCCGATA 20 7.855542E-4 44.0 40 TACGCGG 25 4.442044E-5 44.0 31 TACGACA 20 7.855542E-4 44.0 39 ACGCTTA 20 7.855542E-4 44.0 23 ACCAATT 25 4.442044E-5 44.0 12 AATAGTA 20 7.855542E-4 44.0 15 ATACGGA 20 7.855542E-4 44.0 25 >>END_MODULE